Wall clock time and date at job start Mon Mar 30 2020 02:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00261 * 2 1 4 4 C 1.52996 * 109.47211 * 72.11393 * 3 2 1 5 5 C 1.52998 * 109.47307 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47376 * 180.02562 * 5 4 3 7 7 H 1.07997 * 119.99708 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00255 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99627 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00124 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46974 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47033 * 119.99864 * 10 8 6 13 13 H 1.48495 * 109.47226 * 240.00024 * 10 8 6 14 14 C 1.46901 * 110.99879 * 236.04607 * 2 1 3 15 15 H 1.09007 * 109.67817 * 309.73743 * 14 2 1 16 16 C 1.53358 * 109.68506 * 70.29851 * 14 2 1 17 17 C 1.53107 * 109.51097 * 169.66673 * 16 14 2 18 18 C 1.53371 * 109.50244 * 289.71226 * 17 16 14 19 19 C 1.50832 * 108.44027 * 49.73199 * 18 17 16 20 20 C 1.35756 * 124.11566 * 343.95999 * 19 18 17 21 21 C 1.39297 * 107.98658 * 179.48449 * 20 19 18 22 22 N 1.31065 * 108.07993 * 359.80438 * 21 20 19 23 23 N 1.34316 * 128.03170 * 162.97646 * 19 18 17 24 24 C 1.46499 * 126.09548 * 0.83117 * 23 19 18 25 25 H 1.09001 * 109.46964 * 183.95815 * 1 2 3 26 26 H 1.08996 * 109.47076 * 303.95327 * 1 2 3 27 27 H 1.08996 * 109.47040 * 63.95815 * 1 2 3 28 28 H 1.08992 * 109.47372 * 192.11880 * 3 2 1 29 29 H 1.09005 * 109.46612 * 312.11587 * 3 2 1 30 30 H 1.09005 * 109.47199 * 300.00818 * 4 3 2 31 31 H 1.09003 * 109.46862 * 60.00101 * 4 3 2 32 32 H 1.09008 * 109.46923 * 299.99905 * 5 4 3 33 33 H 1.08993 * 109.47388 * 59.99922 * 5 4 3 34 34 H 0.97002 * 119.99447 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.46379 * 289.67529 * 16 14 2 36 36 H 1.08996 * 109.46754 * 49.64624 * 16 14 2 37 37 H 1.08997 * 109.46999 * 49.72428 * 17 16 14 38 38 H 1.09000 * 109.46271 * 169.70974 * 17 16 14 39 39 H 1.08995 * 109.68066 * 169.65937 * 18 17 16 40 40 H 1.09003 * 109.67992 * 290.17946 * 18 17 16 41 41 H 1.08001 * 125.95628 * 179.82577 * 21 20 19 42 42 H 1.09001 * 109.46718 * 269.71594 * 24 23 19 43 43 H 1.08994 * 109.47447 * 149.71433 * 24 23 19 44 44 H 1.08998 * 109.46752 * 29.71066 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7647 2.0063 1.3727 5 6 2.3125 3.4348 1.3726 6 6 2.0858 4.0600 2.7249 7 1 1.5992 3.4951 3.5062 8 6 2.4994 5.3532 2.9647 9 7 3.0924 6.0410 2.0134 10 14 2.2177 6.1284 4.6408 11 1 1.5366 5.1526 5.5292 12 1 3.5238 6.5105 5.2352 13 1 1.3694 7.3378 4.4905 14 6 1.9954 -0.7660 -1.1376 15 1 1.5144 -1.7434 -1.1761 16 6 1.7261 -0.0052 -2.4416 17 6 2.4934 -0.6685 -3.5885 18 6 3.9960 -0.4167 -3.4125 19 6 4.3775 -0.7761 -1.9982 20 6 3.4863 -0.9391 -0.9872 21 6 4.1970 -1.2759 0.1626 22 7 5.4705 -1.3188 -0.1444 23 7 5.6055 -1.0083 -1.5059 24 6 6.8624 -0.9427 -2.2556 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.5739 0.8524 27 1 -0.3633 0.4512 -0.9233 28 1 3.0637 1.3505 -0.2157 29 1 1.4823 1.9575 -0.7624 30 1 0.6964 2.0271 1.5885 31 1 2.2779 1.4201 2.1351 32 1 3.3808 3.4143 1.1567 33 1 1.7991 4.0208 0.6103 34 1 3.3831 6.9509 2.1820 35 1 0.6583 -0.0249 -2.6597 36 1 2.0556 1.0282 -2.3339 37 1 2.3016 -1.7415 -3.5812 38 1 2.1633 -0.2470 -4.5380 39 1 4.5563 -1.0339 -4.1147 40 1 4.2154 0.6357 -3.5926 41 1 3.7725 -1.4683 1.1368 42 1 7.0850 -1.9226 -2.6779 43 1 7.6693 -0.6435 -1.5867 44 1 6.7680 -0.2134 -3.0600 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135592875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:40 Heat of formation + Delta-G solvation = 65.778117 kcal Electronic energy + Delta-G solvation = -22163.603773 eV Core-core repulsion = 19116.963630 eV Total energy + Delta-G solvation = -3046.640143 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48886 -38.24838 -35.39387 -33.70361 -33.12778 -31.27895 -29.45054 -29.03326 -26.98792 -26.53489 -24.89219 -23.22832 -22.25452 -21.27827 -20.36808 -19.70418 -18.34144 -16.77571 -16.14956 -15.87044 -14.98184 -14.76039 -14.55250 -14.46837 -14.25734 -14.06626 -13.64281 -13.34014 -12.93867 -12.83339 -12.72082 -12.27586 -12.17209 -11.94855 -11.71340 -11.45284 -11.17091 -11.08503 -10.99448 -10.73194 -10.62436 -10.46901 -10.41404 -10.25795 -9.49333 -9.24594 -9.10244 -8.96752 -8.27830 -8.09153 -7.87688 -5.93247 -3.94545 1.96797 2.59265 3.00655 3.35557 3.42690 3.47680 4.24802 4.50013 4.51781 4.55375 4.74086 4.86241 5.02670 5.10082 5.14642 5.27317 5.36866 5.38620 5.42743 5.48016 5.61371 5.62135 5.65099 5.73065 5.82590 5.93433 5.95162 6.08499 6.18217 6.25218 6.28557 6.34760 6.50658 6.83576 6.86905 6.92905 7.11716 7.25577 7.52238 7.55171 7.77637 7.89989 7.93811 8.08504 8.52512 9.13185 9.69104 11.18417 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018610 B = 0.004341 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.230436 B = 6448.353655 C = 7088.079749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.532 5.532 3 C 0.060 3.940 4 C -0.102 4.102 5 C 0.022 3.978 6 C -0.514 4.514 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.890 3.110 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.165 3.835 15 H 0.081 0.919 16 C -0.157 4.157 17 C -0.105 4.105 18 C -0.055 4.055 19 C 0.081 3.919 20 C -0.222 4.222 21 C 0.082 3.918 22 N -0.308 5.308 23 N -0.373 5.373 24 C 0.103 3.897 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.013 0.987 33 H 0.012 0.988 34 H 0.258 0.742 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.185 0.815 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.863 -16.301 -14.046 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.254 5.254 3 C -0.067 4.067 4 C -0.140 4.140 5 C -0.015 4.015 6 C -0.552 4.552 7 H 0.074 0.926 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.211 1.211 14 C 0.055 3.945 15 H 0.099 0.901 16 C -0.196 4.196 17 C -0.144 4.144 18 C -0.094 4.094 19 C -0.048 4.048 20 C -0.234 4.234 21 C -0.103 4.103 22 N -0.129 5.129 23 N -0.155 5.155 24 C -0.039 4.039 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.030 0.970 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.201 0.799 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.433 -16.576 -13.262 21.368 hybrid contribution -1.034 1.204 -0.124 1.592 sum 1.400 -15.372 -13.386 20.432 Atomic orbital electron populations 1.22387 0.87932 1.01337 1.00823 1.62204 1.07158 1.15351 1.40690 1.22243 0.99495 0.86266 0.98719 1.21613 1.00096 0.98261 0.94055 1.19060 0.96045 0.89588 0.96824 1.21309 1.37833 0.98081 0.98023 0.92633 1.25028 0.95364 0.97393 0.96779 1.69986 1.40760 1.10532 1.32504 0.86561 0.77832 0.79230 0.84550 1.19688 1.21078 1.21100 1.20006 0.89816 0.96593 0.88039 0.90094 1.22363 1.00202 1.01310 0.95768 1.21448 0.93012 1.01271 0.98663 1.20327 0.97414 1.01988 0.89684 1.20836 0.85454 1.01643 0.96882 1.19675 0.95577 1.15262 0.92893 1.23559 0.89696 0.97481 0.99545 1.77561 1.19536 1.24937 0.90817 1.48141 1.05341 1.54257 1.07714 1.21766 0.83751 1.02570 0.95775 0.92132 0.90810 0.95927 0.91416 0.95412 0.93636 0.92785 0.96868 0.97013 0.93207 0.91548 0.90782 0.91513 0.91178 0.90598 0.89907 0.79858 0.91145 0.89316 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.20 60.07 0.55 0.86 16 2 N -0.53 -8.05 4.55 -235.98 -1.07 -9.13 16 3 C 0.06 1.09 3.71 -3.83 -0.01 1.08 16 4 C -0.10 -2.22 5.20 -26.73 -0.14 -2.36 16 5 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 6 C -0.51 -15.08 9.11 -34.44 -0.31 -15.39 16 7 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 8 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 10 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.17 2.16 2.55 -68.61 -0.18 1.98 16 15 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 16 C -0.16 -1.80 4.55 -26.49 -0.12 -1.92 16 17 C -0.11 -0.95 5.90 -26.48 -0.16 -1.11 16 18 C -0.06 -0.53 5.83 -27.63 -0.16 -0.69 16 19 C 0.08 1.06 6.73 -82.33 -0.55 0.50 16 20 C -0.22 -3.20 4.16 -105.05 -0.44 -3.63 16 21 C 0.08 1.29 11.84 -17.49 -0.21 1.09 16 22 N -0.31 -5.02 12.59 30.54 0.38 -4.63 16 23 N -0.37 -5.07 4.00 -63.88 -0.26 -5.33 16 24 C 0.10 0.92 11.32 59.85 0.68 1.60 16 25 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 26 H 0.07 1.06 6.57 -51.93 -0.34 0.72 16 27 H 0.02 0.28 6.88 -51.93 -0.36 -0.08 16 28 H 0.07 1.34 6.87 -51.93 -0.36 0.99 16 29 H 0.03 0.51 6.93 -51.93 -0.36 0.15 16 30 H 0.04 0.96 6.70 -51.93 -0.35 0.62 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.01 0.38 8.14 -51.92 -0.42 -0.05 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.07 0.70 7.20 -51.93 -0.37 0.33 16 36 H 0.07 1.00 6.12 -51.93 -0.32 0.68 16 37 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.18 2.70 8.06 -52.49 -0.42 2.28 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.57 7.90 -51.93 -0.41 0.16 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -33.57 344.57 -8.79 -42.37 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -7.47 Total: -2.68 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -1.28 Total: -16.00 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.21 Total: -46.12 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.57 -8.79 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135592875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.146 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds