Wall clock time and date at job start Mon Mar 30 2020 01:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.52136 * 2 1 4 4 C 1.53116 * 109.52162 * 120.12940 * 2 1 3 5 5 C 1.53041 * 109.27614 * 177.55725 * 4 2 1 6 6 N 1.46850 * 109.52467 * 300.81983 * 5 4 2 7 7 C 1.46899 * 111.00051 * 185.83888 * 6 5 4 8 8 C 1.52997 * 109.47232 * 66.04768 * 7 6 5 9 9 C 1.53001 * 109.47275 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47238 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00051 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00104 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99937 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00046 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47420 * 59.99949 * 14 12 10 16 16 H 1.48500 * 109.47110 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47229 * 299.99880 * 14 12 10 18 18 C 1.46850 * 111.19678 * 61.74156 * 6 5 4 19 19 C 1.53042 * 109.57373 * 298.29100 * 18 6 5 20 20 H 1.08998 * 109.45612 * 299.17163 * 19 18 6 21 21 N 1.46507 * 109.55619 * 179.05332 * 19 18 6 22 22 C 1.36882 * 126.39253 * 120.16655 * 21 19 18 23 23 C 1.34675 * 106.81350 * 180.02562 * 22 21 19 24 24 N 1.34122 * 108.02253 * 359.97438 * 23 22 21 25 25 C 1.30510 * 109.25493 * 359.72922 * 24 23 22 26 26 H 1.09001 * 109.47002 * 299.99540 * 1 2 3 27 27 H 1.08993 * 109.46955 * 59.99977 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.50611 * 297.49543 * 4 2 1 30 30 H 1.08997 * 109.50614 * 57.58336 * 4 2 1 31 31 H 1.08996 * 109.46234 * 60.83761 * 5 4 2 32 32 H 1.09003 * 109.46459 * 180.81822 * 5 4 2 33 33 H 1.09003 * 109.47113 * 186.04824 * 7 6 5 34 34 H 1.08997 * 109.47135 * 306.04575 * 7 6 5 35 35 H 1.09003 * 109.47117 * 300.00053 * 8 7 6 36 36 H 1.08997 * 109.47218 * 59.99858 * 8 7 6 37 37 H 1.09003 * 109.46993 * 300.00008 * 9 8 7 38 38 H 1.08997 * 109.47212 * 59.99733 * 9 8 7 39 39 H 0.97004 * 120.00150 * 179.97438 * 13 12 10 40 40 H 1.09003 * 109.46320 * 58.27396 * 18 6 5 41 41 H 1.08991 * 109.46188 * 178.25435 * 18 6 5 42 42 H 1.07998 * 126.59702 * 0.03699 * 22 21 19 43 43 H 1.07998 * 125.98746 * 180.02562 * 23 22 21 44 44 H 1.07997 * 125.65150 * 180.28959 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7244 1.2482 5 6 3.5709 -0.7746 1.2120 6 7 4.0103 -1.4790 0.0007 7 6 5.4671 -1.6679 0.0007 8 6 5.8583 -2.6165 1.1355 9 6 7.3757 -2.8128 1.1360 10 6 7.7611 -3.7466 2.2541 11 1 6.9998 -4.1594 2.8997 12 6 9.0854 -4.0751 2.4525 13 7 10.0122 -3.5738 1.6655 14 14 9.5630 -5.2333 3.8380 15 1 8.8940 -6.5443 3.6402 16 1 11.0358 -5.4236 3.8385 17 1 9.1391 -4.6523 5.1372 18 6 3.5708 -0.7759 -1.2113 19 6 2.0417 -0.7243 -1.2482 20 1 1.6446 -1.7392 -1.2685 21 7 1.6041 -0.0031 -2.4461 22 6 0.8173 -0.4989 -3.4505 23 6 0.6617 0.4924 -4.3487 24 7 1.3345 1.5643 -3.9046 25 6 1.8965 1.2767 -2.7623 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7163 -0.1879 2.1394 30 1 1.6442 -1.7391 1.2687 31 1 3.9675 0.2406 1.2058 32 1 3.9379 -1.3025 2.0921 33 1 5.7782 -2.0943 -0.9529 34 1 5.9582 -0.7057 0.1459 35 1 5.5472 -2.1900 2.0892 36 1 5.3672 -3.5787 0.9904 37 1 7.6872 -3.2390 0.1824 38 1 7.8664 -1.8504 1.2814 39 1 10.9439 -3.8045 1.8053 40 1 3.9674 0.2394 -1.2062 41 1 3.9376 -1.3046 -2.0910 42 1 0.4012 -1.4937 -3.5110 43 1 0.0938 0.4346 -5.2656 44 1 2.4982 1.9498 -2.1697 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136088405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:37 Heat of formation + Delta-G solvation = 46.545112 kcal Electronic energy + Delta-G solvation = -21609.779858 eV Core-core repulsion = 18562.305709 eV Total energy + Delta-G solvation = -3047.474148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.30384 -39.34526 -35.84676 -33.59011 -33.21185 -31.41601 -30.02736 -29.27417 -28.28991 -25.88862 -23.79232 -23.23030 -21.98286 -21.60749 -21.10520 -19.92918 -19.58658 -17.60468 -16.31954 -15.70802 -15.43110 -15.18762 -14.90706 -14.45866 -14.37230 -14.19674 -13.91984 -13.73161 -13.71441 -13.19279 -12.77276 -12.57736 -12.45434 -12.12669 -11.76829 -11.64287 -11.39359 -11.04803 -10.99981 -10.81494 -10.79073 -10.57583 -10.49262 -10.08233 -9.70342 -9.65856 -9.36396 -9.10751 -8.63661 -8.37068 -8.28765 -6.02147 -4.04644 1.94381 2.55950 3.07315 3.31545 3.36119 3.38373 3.91641 4.19223 4.38199 4.44517 4.50218 4.57735 4.70441 4.83897 5.00255 5.10255 5.21752 5.24982 5.31351 5.33588 5.36381 5.41953 5.53972 5.57204 5.59092 5.67290 5.73583 5.82364 5.91846 5.96061 6.05256 6.20871 6.21572 6.60376 6.62353 6.64892 6.99422 7.06431 7.19446 7.22105 7.64431 7.78696 7.96495 7.97578 8.40383 9.02288 9.59533 11.09258 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032874 B = 0.003088 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.522939 B = 9065.205341 C = 9591.179424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.108 4.108 5 C 0.046 3.954 6 N -0.534 5.534 7 C 0.058 3.942 8 C -0.104 4.104 9 C 0.022 3.978 10 C -0.520 4.520 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.049 3.951 19 C 0.142 3.858 20 H 0.109 0.891 21 N -0.446 5.446 22 C -0.052 4.052 23 C -0.035 4.035 24 N -0.498 5.498 25 C 0.182 3.818 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.031 0.969 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.013 0.987 39 H 0.261 0.739 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.171 0.829 43 H 0.167 0.833 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.756 7.509 -5.584 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.093 0.907 4 C -0.146 4.146 5 C -0.081 4.081 6 N -0.259 5.259 7 C -0.069 4.069 8 C -0.142 4.142 9 C -0.016 4.016 10 C -0.559 4.559 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.080 4.080 19 C 0.039 3.961 20 H 0.127 0.873 21 N -0.128 5.128 22 C -0.186 4.186 23 C -0.184 4.184 24 N -0.216 5.216 25 C -0.100 4.100 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.189 0.811 43 H 0.184 0.816 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -19.671 7.722 -5.901 21.941 hybrid contribution 0.769 -0.635 1.086 1.475 sum -18.903 7.088 -4.815 20.754 Atomic orbital electron populations 1.21805 0.94276 1.02164 1.02054 1.21551 0.96537 0.99791 0.94006 0.90723 1.21643 0.95377 1.01332 0.96284 1.22234 0.94714 0.96910 0.94268 1.61941 1.15069 1.48287 1.00587 1.22310 0.83880 0.99217 1.01467 1.21664 0.99903 0.97518 0.95101 1.19065 0.88516 0.96803 0.97167 1.21198 0.92293 1.27744 1.14628 0.92722 1.25026 0.96719 0.96337 0.96389 1.69952 1.00762 1.44511 1.38333 0.86656 0.77287 0.81445 0.82600 1.20206 1.21294 1.20262 1.22316 0.92587 0.97971 0.95125 1.21578 0.95593 0.96744 0.82232 0.87336 1.45652 1.37613 1.11761 1.17815 1.22742 1.02587 1.01579 0.91685 1.22270 1.04725 0.90043 1.01320 1.70303 1.12791 1.28866 1.09673 1.24813 1.03942 0.85386 0.95905 0.92132 0.92652 0.92378 0.90704 0.90555 0.94868 0.89127 0.91067 0.95041 0.93346 0.92506 0.96611 0.96828 0.92936 0.94346 0.90057 0.81135 0.81617 0.78617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.07 37.16 0.34 -0.79 16 2 C -0.10 -0.84 2.23 -90.49 -0.20 -1.04 16 3 H 0.07 0.64 7.88 -51.93 -0.41 0.24 16 4 C -0.11 -0.98 5.38 -26.65 -0.14 -1.12 16 5 C 0.05 0.55 5.29 -3.83 -0.02 0.53 16 6 N -0.53 -7.06 4.66 -234.67 -1.09 -8.15 16 7 C 0.06 0.94 4.96 -3.83 -0.02 0.92 16 8 C -0.10 -2.05 5.09 -26.73 -0.14 -2.19 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 11 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 14 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 C 0.05 0.55 4.81 -3.83 -0.02 0.54 16 19 C 0.14 1.33 2.44 -67.84 -0.17 1.16 16 20 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16 21 N -0.45 -4.41 1.98 -111.36 -0.22 -4.63 16 22 C -0.05 -0.50 11.55 -16.56 -0.19 -0.69 16 23 C -0.04 -0.39 11.87 -17.81 -0.21 -0.60 16 24 N -0.50 -6.43 11.25 -14.67 -0.17 -6.59 16 25 C 0.18 2.00 11.50 -90.37 -1.04 0.96 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.49 7.69 -51.93 -0.40 0.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 1.18 6.22 -51.93 -0.32 0.85 16 33 H 0.07 1.17 7.98 -51.93 -0.41 0.76 16 34 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 35 H 0.05 0.93 6.44 -51.93 -0.33 0.60 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.04 0.43 7.93 -51.93 -0.41 0.02 16 41 H 0.08 0.98 8.01 -51.93 -0.42 0.56 16 42 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -31.04 349.45 -10.60 -41.63 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -7.74 Total: -2.62 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.36 Total: -15.30 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.74 Total: -45.47 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.04 -10.60 -41.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136088405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.179 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds