Wall clock time and date at job start Mon Mar 30 2020 01:58:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08995 * 109.52136 * 2 1
4 4 C 1.53116 * 109.52162 * 120.12940 * 2 1 3
5 5 C 1.53041 * 109.27614 * 177.55725 * 4 2 1
6 6 N 1.46850 * 109.52467 * 300.81983 * 5 4 2
7 7 C 1.46899 * 111.00051 * 185.83888 * 6 5 4
8 8 C 1.52997 * 109.47232 * 66.04768 * 7 6 5
9 9 C 1.53001 * 109.47275 * 180.02562 * 8 7 6
10 10 C 1.50695 * 109.47238 * 179.97438 * 9 8 7
11 11 H 1.08006 * 120.00051 * 0.02562 * 10 9 8
12 12 C 1.37876 * 120.00104 * 179.97438 * 10 9 8
13 13 N 1.31511 * 119.99937 * 359.97438 * 12 10 9
14 14 Si 1.86796 * 120.00046 * 180.02562 * 12 10 9
15 15 H 1.48506 * 109.47420 * 59.99949 * 14 12 10
16 16 H 1.48500 * 109.47110 * 180.02562 * 14 12 10
17 17 H 1.48497 * 109.47229 * 299.99880 * 14 12 10
18 18 C 1.46850 * 111.19678 * 61.74156 * 6 5 4
19 19 C 1.53042 * 109.57373 * 298.29100 * 18 6 5
20 20 H 1.08998 * 109.45612 * 299.17163 * 19 18 6
21 21 N 1.46507 * 109.55619 * 179.05332 * 19 18 6
22 22 C 1.36882 * 126.39253 * 120.16655 * 21 19 18
23 23 C 1.34675 * 106.81350 * 180.02562 * 22 21 19
24 24 N 1.34122 * 108.02253 * 359.97438 * 23 22 21
25 25 C 1.30510 * 109.25493 * 359.72922 * 24 23 22
26 26 H 1.09001 * 109.47002 * 299.99540 * 1 2 3
27 27 H 1.08993 * 109.46955 * 59.99977 * 1 2 3
28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3
29 29 H 1.08994 * 109.50611 * 297.49543 * 4 2 1
30 30 H 1.08997 * 109.50614 * 57.58336 * 4 2 1
31 31 H 1.08996 * 109.46234 * 60.83761 * 5 4 2
32 32 H 1.09003 * 109.46459 * 180.81822 * 5 4 2
33 33 H 1.09003 * 109.47113 * 186.04824 * 7 6 5
34 34 H 1.08997 * 109.47135 * 306.04575 * 7 6 5
35 35 H 1.09003 * 109.47117 * 300.00053 * 8 7 6
36 36 H 1.08997 * 109.47218 * 59.99858 * 8 7 6
37 37 H 1.09003 * 109.46993 * 300.00008 * 9 8 7
38 38 H 1.08997 * 109.47212 * 59.99733 * 9 8 7
39 39 H 0.97004 * 120.00150 * 179.97438 * 13 12 10
40 40 H 1.09003 * 109.46320 * 58.27396 * 18 6 5
41 41 H 1.08991 * 109.46188 * 178.25435 * 18 6 5
42 42 H 1.07998 * 126.59702 * 0.03699 * 22 21 19
43 43 H 1.07998 * 125.98746 * 180.02562 * 23 22 21
44 44 H 1.07997 * 125.65150 * 180.28959 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8943 1.0273 0.0000
4 6 2.0417 -0.7244 1.2482
5 6 3.5709 -0.7746 1.2120
6 7 4.0103 -1.4790 0.0007
7 6 5.4671 -1.6679 0.0007
8 6 5.8583 -2.6165 1.1355
9 6 7.3757 -2.8128 1.1360
10 6 7.7611 -3.7466 2.2541
11 1 6.9998 -4.1594 2.8997
12 6 9.0854 -4.0751 2.4525
13 7 10.0122 -3.5738 1.6655
14 14 9.5630 -5.2333 3.8380
15 1 8.8940 -6.5443 3.6402
16 1 11.0358 -5.4236 3.8385
17 1 9.1391 -4.6523 5.1372
18 6 3.5708 -0.7759 -1.2113
19 6 2.0417 -0.7243 -1.2482
20 1 1.6446 -1.7392 -1.2685
21 7 1.6041 -0.0031 -2.4461
22 6 0.8173 -0.4989 -3.4505
23 6 0.6617 0.4924 -4.3487
24 7 1.3345 1.5643 -3.9046
25 6 1.8965 1.2767 -2.7623
26 1 -0.3633 0.5138 0.8900
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3633 -1.0277 -0.0005
29 1 1.7163 -0.1879 2.1394
30 1 1.6442 -1.7391 1.2687
31 1 3.9675 0.2406 1.2058
32 1 3.9379 -1.3025 2.0921
33 1 5.7782 -2.0943 -0.9529
34 1 5.9582 -0.7057 0.1459
35 1 5.5472 -2.1900 2.0892
36 1 5.3672 -3.5787 0.9904
37 1 7.6872 -3.2390 0.1824
38 1 7.8664 -1.8504 1.2814
39 1 10.9439 -3.8045 1.8053
40 1 3.9674 0.2394 -1.2062
41 1 3.9376 -1.3046 -2.0910
42 1 0.4012 -1.4937 -3.5110
43 1 0.0938 0.4346 -5.2656
44 1 2.4982 1.9498 -2.1697
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000136088405.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:58:37
Heat of formation + Delta-G solvation = 46.545112 kcal
Electronic energy + Delta-G solvation = -21609.779858 eV
Core-core repulsion = 18562.305709 eV
Total energy + Delta-G solvation = -3047.474148 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 277.185 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-42.30384 -39.34526 -35.84676 -33.59011 -33.21185 -31.41601 -30.02736 -29.27417
-28.28991 -25.88862 -23.79232 -23.23030 -21.98286 -21.60749 -21.10520 -19.92918
-19.58658 -17.60468 -16.31954 -15.70802 -15.43110 -15.18762 -14.90706 -14.45866
-14.37230 -14.19674 -13.91984 -13.73161 -13.71441 -13.19279 -12.77276 -12.57736
-12.45434 -12.12669 -11.76829 -11.64287 -11.39359 -11.04803 -10.99981 -10.81494
-10.79073 -10.57583 -10.49262 -10.08233 -9.70342 -9.65856 -9.36396 -9.10751
-8.63661 -8.37068 -8.28765 -6.02147 -4.04644 1.94381 2.55950 3.07315
3.31545 3.36119 3.38373 3.91641 4.19223 4.38199 4.44517 4.50218
4.57735 4.70441 4.83897 5.00255 5.10255 5.21752 5.24982 5.31351
5.33588 5.36381 5.41953 5.53972 5.57204 5.59092 5.67290 5.73583
5.82364 5.91846 5.96061 6.05256 6.20871 6.21572 6.60376 6.62353
6.64892 6.99422 7.06431 7.19446 7.22105 7.64431 7.78696 7.96495
7.97578 8.40383 9.02288 9.59533 11.09258
Molecular weight = 277.18amu
Principal moments of inertia in cm(-1)
A = 0.032874 B = 0.003088 C = 0.002919
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 851.522939 B = 9065.205341 C = 9591.179424
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.100 4.100
3 H 0.074 0.926
4 C -0.108 4.108
5 C 0.046 3.954
6 N -0.534 5.534
7 C 0.058 3.942
8 C -0.104 4.104
9 C 0.022 3.978
10 C -0.520 4.520
11 H 0.055 0.945
12 C 0.056 3.944
13 N -0.896 5.896
14 Si 0.892 3.108
15 H -0.276 1.276
16 H -0.287 1.287
17 H -0.277 1.277
18 C 0.049 3.951
19 C 0.142 3.858
20 H 0.109 0.891
21 N -0.446 5.446
22 C -0.052 4.052
23 C -0.035 4.035
24 N -0.498 5.498
25 C 0.182 3.818
26 H 0.060 0.940
27 H 0.054 0.946
28 H 0.057 0.943
29 H 0.074 0.926
30 H 0.076 0.924
31 H 0.033 0.967
32 H 0.090 0.910
33 H 0.071 0.929
34 H 0.031 0.969
35 H 0.048 0.952
36 H 0.056 0.944
37 H 0.016 0.984
38 H 0.013 0.987
39 H 0.261 0.739
40 H 0.038 0.962
41 H 0.081 0.919
42 H 0.171 0.829
43 H 0.167 0.833
44 H 0.197 0.803
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.756 7.509 -5.584 21.860
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.119 4.119
3 H 0.093 0.907
4 C -0.146 4.146
5 C -0.081 4.081
6 N -0.259 5.259
7 C -0.069 4.069
8 C -0.142 4.142
9 C -0.016 4.016
10 C -0.559 4.559
11 H 0.073 0.927
12 C -0.145 4.145
13 N -0.536 5.536
14 Si 0.720 3.280
15 H -0.202 1.202
16 H -0.213 1.213
17 H -0.203 1.203
18 C -0.080 4.080
19 C 0.039 3.961
20 H 0.127 0.873
21 N -0.128 5.128
22 C -0.186 4.186
23 C -0.184 4.184
24 N -0.216 5.216
25 C -0.100 4.100
26 H 0.079 0.921
27 H 0.073 0.927
28 H 0.076 0.924
29 H 0.093 0.907
30 H 0.094 0.906
31 H 0.051 0.949
32 H 0.109 0.891
33 H 0.089 0.911
34 H 0.050 0.950
35 H 0.067 0.933
36 H 0.075 0.925
37 H 0.034 0.966
38 H 0.032 0.968
39 H 0.071 0.929
40 H 0.057 0.943
41 H 0.099 0.901
42 H 0.189 0.811
43 H 0.184 0.816
44 H 0.214 0.786
Dipole moment (debyes) X Y Z Total
from point charges -19.671 7.722 -5.901 21.941
hybrid contribution 0.769 -0.635 1.086 1.475
sum -18.903 7.088 -4.815 20.754
Atomic orbital electron populations
1.21805 0.94276 1.02164 1.02054 1.21551 0.96537 0.99791 0.94006
0.90723 1.21643 0.95377 1.01332 0.96284 1.22234 0.94714 0.96910
0.94268 1.61941 1.15069 1.48287 1.00587 1.22310 0.83880 0.99217
1.01467 1.21664 0.99903 0.97518 0.95101 1.19065 0.88516 0.96803
0.97167 1.21198 0.92293 1.27744 1.14628 0.92722 1.25026 0.96719
0.96337 0.96389 1.69952 1.00762 1.44511 1.38333 0.86656 0.77287
0.81445 0.82600 1.20206 1.21294 1.20262 1.22316 0.92587 0.97971
0.95125 1.21578 0.95593 0.96744 0.82232 0.87336 1.45652 1.37613
1.11761 1.17815 1.22742 1.02587 1.01579 0.91685 1.22270 1.04725
0.90043 1.01320 1.70303 1.12791 1.28866 1.09673 1.24813 1.03942
0.85386 0.95905 0.92132 0.92652 0.92378 0.90704 0.90555 0.94868
0.89127 0.91067 0.95041 0.93346 0.92506 0.96611 0.96828 0.92936
0.94346 0.90057 0.81135 0.81617 0.78617
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.13 9.07 37.16 0.34 -0.79 16
2 C -0.10 -0.84 2.23 -90.49 -0.20 -1.04 16
3 H 0.07 0.64 7.88 -51.93 -0.41 0.24 16
4 C -0.11 -0.98 5.38 -26.65 -0.14 -1.12 16
5 C 0.05 0.55 5.29 -3.83 -0.02 0.53 16
6 N -0.53 -7.06 4.66 -234.67 -1.09 -8.15 16
7 C 0.06 0.94 4.96 -3.83 -0.02 0.92 16
8 C -0.10 -2.05 5.09 -26.73 -0.14 -2.19 16
9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16
10 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16
11 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16
12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16
13 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16
14 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16
15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
18 C 0.05 0.55 4.81 -3.83 -0.02 0.54 16
19 C 0.14 1.33 2.44 -67.84 -0.17 1.16 16
20 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16
21 N -0.45 -4.41 1.98 -111.36 -0.22 -4.63 16
22 C -0.05 -0.50 11.55 -16.56 -0.19 -0.69 16
23 C -0.04 -0.39 11.87 -17.81 -0.21 -0.60 16
24 N -0.50 -6.43 11.25 -14.67 -0.17 -6.59 16
25 C 0.18 2.00 11.50 -90.37 -1.04 0.96 16
26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
27 H 0.05 0.49 7.69 -51.93 -0.40 0.09 16
28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16
31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.09 1.18 6.22 -51.93 -0.32 0.85 16
33 H 0.07 1.17 7.98 -51.93 -0.41 0.76 16
34 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16
35 H 0.05 0.93 6.44 -51.93 -0.33 0.60 16
36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16
39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
40 H 0.04 0.43 7.93 -51.93 -0.41 0.02 16
41 H 0.08 0.98 8.01 -51.93 -0.42 0.56 16
42 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16
43 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16
44 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16
LS Contribution 349.45 15.07 5.27 5.27
Total: -1.00 -31.04 349.45 -10.60 -41.63
By element:
Atomic # 1 Polarization: 5.12 SS G_CDS: -7.74 Total: -2.62 kcal
Atomic # 6 Polarization: -12.94 SS G_CDS: -2.36 Total: -15.30 kcal
Atomic # 7 Polarization: -44.73 SS G_CDS: -0.74 Total: -45.47 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -31.04 -10.60 -41.63 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000136088405.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.179 kcal
(2) G-P(sol) polarization free energy of solvation -31.038 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.141 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.545 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds