Wall clock time and date at job start Mon Mar 30 2020 01:58:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08995 * 109.52136 * 2 1
4 4 C 1.53116 * 109.52162 * 120.12940 * 2 1 3
5 5 C 1.53041 * 109.27614 * 177.55725 * 4 2 1
6 6 N 1.46850 * 109.52467 * 300.81983 * 5 4 2
7 7 C 1.46899 * 111.00051 * 185.83888 * 6 5 4
8 8 C 1.52997 * 109.47232 * 66.04768 * 7 6 5
9 9 C 1.53001 * 109.47275 * 180.02562 * 8 7 6
10 10 C 1.50695 * 109.47238 * 179.97438 * 9 8 7
11 11 H 1.08006 * 120.00051 * 0.02562 * 10 9 8
12 12 C 1.37876 * 120.00104 * 179.97438 * 10 9 8
13 13 N 1.31511 * 119.99937 * 359.97438 * 12 10 9
14 14 Si 1.86796 * 120.00046 * 180.02562 * 12 10 9
15 15 H 1.48506 * 109.47420 * 59.99949 * 14 12 10
16 16 H 1.48500 * 109.47110 * 180.02562 * 14 12 10
17 17 H 1.48497 * 109.47229 * 299.99880 * 14 12 10
18 18 C 1.46850 * 111.19678 * 61.74156 * 6 5 4
19 19 C 1.53042 * 109.57373 * 298.29100 * 18 6 5
20 20 H 1.08998 * 109.45612 * 299.17163 * 19 18 6
21 21 N 1.46507 * 109.55619 * 179.05332 * 19 18 6
22 22 C 1.36882 * 126.39253 * 120.16655 * 21 19 18
23 23 C 1.34675 * 106.81350 * 180.02562 * 22 21 19
24 24 N 1.34122 * 108.02253 * 359.97438 * 23 22 21
25 25 C 1.30510 * 109.25493 * 359.72922 * 24 23 22
26 26 H 1.09001 * 109.47002 * 299.99540 * 1 2 3
27 27 H 1.08993 * 109.46955 * 59.99977 * 1 2 3
28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3
29 29 H 1.08994 * 109.50611 * 297.49543 * 4 2 1
30 30 H 1.08997 * 109.50614 * 57.58336 * 4 2 1
31 31 H 1.08996 * 109.46234 * 60.83761 * 5 4 2
32 32 H 1.09003 * 109.46459 * 180.81822 * 5 4 2
33 33 H 1.09003 * 109.47113 * 186.04824 * 7 6 5
34 34 H 1.08997 * 109.47135 * 306.04575 * 7 6 5
35 35 H 1.09003 * 109.47117 * 300.00053 * 8 7 6
36 36 H 1.08997 * 109.47218 * 59.99858 * 8 7 6
37 37 H 1.09003 * 109.46993 * 300.00008 * 9 8 7
38 38 H 1.08997 * 109.47212 * 59.99733 * 9 8 7
39 39 H 0.97004 * 120.00150 * 179.97438 * 13 12 10
40 40 H 1.09003 * 109.46320 * 58.27396 * 18 6 5
41 41 H 1.08991 * 109.46188 * 178.25435 * 18 6 5
42 42 H 1.07998 * 126.59702 * 0.03699 * 22 21 19
43 43 H 1.07998 * 125.98746 * 180.02562 * 23 22 21
44 44 H 1.07997 * 125.65150 * 180.28959 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8943 1.0273 0.0000
4 6 2.0417 -0.7244 1.2482
5 6 3.5709 -0.7746 1.2120
6 7 4.0103 -1.4790 0.0007
7 6 5.4671 -1.6679 0.0007
8 6 5.8583 -2.6165 1.1355
9 6 7.3757 -2.8128 1.1360
10 6 7.7611 -3.7466 2.2541
11 1 6.9998 -4.1594 2.8997
12 6 9.0854 -4.0751 2.4525
13 7 10.0122 -3.5738 1.6655
14 14 9.5630 -5.2333 3.8380
15 1 8.8940 -6.5443 3.6402
16 1 11.0358 -5.4236 3.8385
17 1 9.1391 -4.6523 5.1372
18 6 3.5708 -0.7759 -1.2113
19 6 2.0417 -0.7243 -1.2482
20 1 1.6446 -1.7392 -1.2685
21 7 1.6041 -0.0031 -2.4461
22 6 0.8173 -0.4989 -3.4505
23 6 0.6617 0.4924 -4.3487
24 7 1.3345 1.5643 -3.9046
25 6 1.8965 1.2767 -2.7623
26 1 -0.3633 0.5138 0.8900
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3633 -1.0277 -0.0005
29 1 1.7163 -0.1879 2.1394
30 1 1.6442 -1.7391 1.2687
31 1 3.9675 0.2406 1.2058
32 1 3.9379 -1.3025 2.0921
33 1 5.7782 -2.0943 -0.9529
34 1 5.9582 -0.7057 0.1459
35 1 5.5472 -2.1900 2.0892
36 1 5.3672 -3.5787 0.9904
37 1 7.6872 -3.2390 0.1824
38 1 7.8664 -1.8504 1.2814
39 1 10.9439 -3.8045 1.8053
40 1 3.9674 0.2394 -1.2062
41 1 3.9376 -1.3046 -2.0910
42 1 0.4012 -1.4937 -3.5110
43 1 0.0938 0.4346 -5.2656
44 1 2.4982 1.9498 -2.1697
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000136088405.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:58:37
Heat of formation + Delta-G solvation = 30.054550 kcal
Electronic energy + Delta-G solvation = -21610.494942 eV
Core-core repulsion = 18562.305709 eV
Total energy + Delta-G solvation = -3048.189233 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 277.185 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-43.09448 -40.27817 -37.02910 -35.36573 -34.08704 -33.13573 -30.86185 -30.08138
-29.54936 -27.40538 -24.74187 -24.64804 -22.95018 -22.58056 -22.09543 -21.37453
-20.38163 -18.62432 -18.22555 -16.73622 -16.59608 -16.32940 -16.17253 -15.77934
-15.33100 -15.16323 -14.86064 -14.66244 -14.56235 -14.32882 -14.06528 -13.71795
-13.57505 -13.39775 -13.04677 -12.93693 -12.63808 -12.48497 -12.42150 -12.29376
-11.82875 -11.68370 -11.66748 -11.39839 -11.29480 -11.11274 -10.91391 -10.54491
-10.46630 -9.41936 -9.37916 -8.20244 -6.31317 1.16785 1.40298 1.43178
1.51114 1.76729 2.25142 2.40900 2.90156 3.13150 3.41799 3.58693
3.75613 3.83128 3.92715 4.06228 4.13487 4.21181 4.33176 4.35540
4.45419 4.51065 4.56097 4.65496 4.69234 4.73808 4.78709 4.82186
4.87390 4.96800 5.01513 5.07498 5.11167 5.24086 5.27899 5.30139
5.45244 5.51899 5.73870 5.85819 5.86445 5.96940 6.07428 6.26131
6.30208 6.85902 7.16716 7.38153 8.91507
Molecular weight = 277.18amu
Principal moments of inertia in cm(-1)
A = 0.032874 B = 0.003088 C = 0.002919
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 851.522939 B = 9065.205341 C = 9591.179424
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.094 4.094
3 H 0.075 0.925
4 C -0.099 4.099
5 C 0.043 3.957
6 N -0.535 5.535
7 C 0.070 3.930
8 C -0.087 4.087
9 C 0.025 3.975
10 C -0.543 4.543
11 H 0.061 0.939
12 C -0.001 4.001
13 N -0.935 5.935
14 Si 0.964 3.036
15 H -0.266 1.266
16 H -0.284 1.284
17 H -0.266 1.266
18 C 0.052 3.948
19 C 0.151 3.849
20 H 0.115 0.885
21 N -0.444 5.444
22 C -0.047 4.047
23 C -0.057 4.057
24 N -0.534 5.534
25 C 0.173 3.827
26 H 0.069 0.931
27 H 0.043 0.957
28 H 0.063 0.937
29 H 0.092 0.908
30 H 0.077 0.923
31 H 0.034 0.966
32 H 0.077 0.923
33 H 0.065 0.935
34 H 0.026 0.974
35 H 0.054 0.946
36 H 0.054 0.946
37 H -0.010 1.010
38 H -0.011 1.011
39 H 0.263 0.737
40 H 0.039 0.961
41 H 0.072 0.928
42 H 0.198 0.802
43 H 0.181 0.819
44 H 0.211 0.789
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.485 6.949 -4.549 23.034
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.113 4.113
3 H 0.094 0.906
4 C -0.137 4.137
5 C -0.084 4.084
6 N -0.260 5.260
7 C -0.058 4.058
8 C -0.125 4.125
9 C -0.012 4.012
10 C -0.581 4.581
11 H 0.079 0.921
12 C -0.199 4.199
13 N -0.575 5.575
14 Si 0.789 3.211
15 H -0.191 1.191
16 H -0.210 1.210
17 H -0.191 1.191
18 C -0.077 4.077
19 C 0.048 3.952
20 H 0.133 0.867
21 N -0.126 5.126
22 C -0.180 4.180
23 C -0.204 4.204
24 N -0.253 5.253
25 C -0.109 4.109
26 H 0.088 0.912
27 H 0.063 0.937
28 H 0.082 0.918
29 H 0.111 0.889
30 H 0.096 0.904
31 H 0.052 0.948
32 H 0.095 0.905
33 H 0.084 0.916
34 H 0.044 0.956
35 H 0.073 0.927
36 H 0.072 0.928
37 H 0.008 0.992
38 H 0.008 0.992
39 H 0.072 0.928
40 H 0.058 0.942
41 H 0.091 0.909
42 H 0.215 0.785
43 H 0.198 0.802
44 H 0.227 0.773
Dipole moment (debyes) X Y Z Total
from point charges -21.430 7.166 -4.868 23.115
hybrid contribution 1.311 -0.435 0.722 1.558
sum -20.119 6.731 -4.146 21.617
Atomic orbital electron populations
1.21726 0.93286 1.02530 1.01976 1.21504 0.97170 0.99555 0.93052
0.90637 1.21587 0.92984 1.01826 0.97303 1.22308 0.96775 0.96454
0.92887 1.61854 1.12608 1.49444 1.02046 1.21996 0.86230 0.97957
0.99622 1.21382 0.95799 0.98389 0.96941 1.18970 0.92209 0.94845
0.95221 1.21672 0.92844 1.28187 1.15351 0.92087 1.25989 0.96736
0.98076 0.99103 1.70091 1.01167 1.46004 1.40246 0.85512 0.76973
0.79297 0.79354 1.19129 1.20958 1.19060 1.22292 0.94120 0.97549
0.93744 1.21495 0.93952 0.97199 0.82564 0.86743 1.45669 1.37488
1.11464 1.17966 1.23176 1.01667 1.02330 0.90843 1.22652 1.05244
0.90068 1.02411 1.70272 1.13994 1.30237 1.10791 1.25101 1.04005
0.86037 0.95778 0.91175 0.93744 0.91782 0.88930 0.90416 0.94775
0.90456 0.91607 0.95563 0.92716 0.92758 0.99173 0.99241 0.92795
0.94240 0.90933 0.78512 0.80154 0.77271
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.75 9.07 71.98 0.65 -1.10 16
2 C -0.09 -1.35 2.23 -10.71 -0.02 -1.37 16
3 H 0.08 1.12 7.88 -2.39 -0.02 1.10 16
4 C -0.10 -1.53 5.38 30.65 0.16 -1.36 16
5 C 0.04 0.95 5.29 86.33 0.46 1.41 16
6 N -0.53 -13.56 4.66 -896.35 -4.17 -17.73 16
7 C 0.07 2.27 4.96 86.30 0.43 2.70 16
8 C -0.09 -3.47 5.09 30.59 0.16 -3.31 16
9 C 0.03 1.31 4.97 29.85 0.15 1.46 16
10 C -0.54 -30.71 9.11 25.60 0.23 -30.47 16
11 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16
12 C 0.00 -0.08 5.46 84.66 0.46 0.38 16
13 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16
14 Si 0.96 43.94 29.54 68.60 2.03 45.97 16
15 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16
16 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16
17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16
18 C 0.05 1.10 4.81 86.33 0.42 1.52 16
19 C 0.15 2.52 2.44 45.04 0.11 2.63 16
20 H 0.11 1.84 8.08 -2.39 -0.02 1.82 16
21 N -0.44 -8.02 1.98 -506.24 -1.00 -9.02 16
22 C -0.05 -0.81 11.55 83.09 0.96 0.15 16
23 C -0.06 -1.17 11.87 83.53 0.99 -0.18 16
24 N -0.53 -13.45 11.25 -200.31 -2.25 -15.70 16
25 C 0.17 3.62 11.50 180.26 2.07 5.69 16
26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16
27 H 0.04 0.68 7.69 -2.39 -0.02 0.66 16
28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16
31 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16
32 H 0.08 1.91 6.22 -2.39 -0.01 1.90 16
33 H 0.07 2.20 7.98 -2.39 -0.02 2.18 16
34 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16
35 H 0.05 2.09 6.44 -2.39 -0.02 2.08 16
36 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16
37 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16
38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16
39 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16
40 H 0.04 0.84 7.93 -2.39 -0.02 0.83 16
41 H 0.07 1.68 8.01 -2.39 -0.02 1.67 16
42 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16
43 H 0.18 2.91 8.06 -2.91 -0.02 2.88 16
44 H 0.21 3.49 8.06 -2.91 -0.02 3.47 16
Total: -1.00 -67.16 349.45 3.05 -64.11
By element:
Atomic # 1 Polarization: 9.99 SS G_CDS: 0.94 Total: 10.92 kcal
Atomic # 6 Polarization: -29.09 SS G_CDS: 7.23 Total: -21.86 kcal
Atomic # 7 Polarization: -91.99 SS G_CDS: -7.14 Total: -99.13 kcal
Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal
Total: -67.16 3.05 -64.11 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000136088405.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.163 kcal
(2) G-P(sol) polarization free energy of solvation -67.157 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.007 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.109 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.055 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds