Wall clock time and date at job start Mon Mar 30 2020 01:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.52136 * 2 1 4 4 C 1.53116 * 109.52162 * 120.12940 * 2 1 3 5 5 C 1.53041 * 109.27614 * 177.55725 * 4 2 1 6 6 N 1.46850 * 109.52467 * 300.81983 * 5 4 2 7 7 C 1.46899 * 111.00051 * 185.83888 * 6 5 4 8 8 C 1.52997 * 109.47232 * 66.04768 * 7 6 5 9 9 C 1.53001 * 109.47275 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47238 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00051 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00104 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99937 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00046 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47420 * 59.99949 * 14 12 10 16 16 H 1.48500 * 109.47110 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47229 * 299.99880 * 14 12 10 18 18 C 1.46850 * 111.19678 * 61.74156 * 6 5 4 19 19 C 1.53042 * 109.57373 * 298.29100 * 18 6 5 20 20 H 1.08998 * 109.45612 * 299.17163 * 19 18 6 21 21 N 1.46507 * 109.55619 * 179.05332 * 19 18 6 22 22 C 1.36882 * 126.39253 * 120.16655 * 21 19 18 23 23 C 1.34675 * 106.81350 * 180.02562 * 22 21 19 24 24 N 1.34122 * 108.02253 * 359.97438 * 23 22 21 25 25 C 1.30510 * 109.25493 * 359.72922 * 24 23 22 26 26 H 1.09001 * 109.47002 * 299.99540 * 1 2 3 27 27 H 1.08993 * 109.46955 * 59.99977 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.50611 * 297.49543 * 4 2 1 30 30 H 1.08997 * 109.50614 * 57.58336 * 4 2 1 31 31 H 1.08996 * 109.46234 * 60.83761 * 5 4 2 32 32 H 1.09003 * 109.46459 * 180.81822 * 5 4 2 33 33 H 1.09003 * 109.47113 * 186.04824 * 7 6 5 34 34 H 1.08997 * 109.47135 * 306.04575 * 7 6 5 35 35 H 1.09003 * 109.47117 * 300.00053 * 8 7 6 36 36 H 1.08997 * 109.47218 * 59.99858 * 8 7 6 37 37 H 1.09003 * 109.46993 * 300.00008 * 9 8 7 38 38 H 1.08997 * 109.47212 * 59.99733 * 9 8 7 39 39 H 0.97004 * 120.00150 * 179.97438 * 13 12 10 40 40 H 1.09003 * 109.46320 * 58.27396 * 18 6 5 41 41 H 1.08991 * 109.46188 * 178.25435 * 18 6 5 42 42 H 1.07998 * 126.59702 * 0.03699 * 22 21 19 43 43 H 1.07998 * 125.98746 * 180.02562 * 23 22 21 44 44 H 1.07997 * 125.65150 * 180.28959 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7244 1.2482 5 6 3.5709 -0.7746 1.2120 6 7 4.0103 -1.4790 0.0007 7 6 5.4671 -1.6679 0.0007 8 6 5.8583 -2.6165 1.1355 9 6 7.3757 -2.8128 1.1360 10 6 7.7611 -3.7466 2.2541 11 1 6.9998 -4.1594 2.8997 12 6 9.0854 -4.0751 2.4525 13 7 10.0122 -3.5738 1.6655 14 14 9.5630 -5.2333 3.8380 15 1 8.8940 -6.5443 3.6402 16 1 11.0358 -5.4236 3.8385 17 1 9.1391 -4.6523 5.1372 18 6 3.5708 -0.7759 -1.2113 19 6 2.0417 -0.7243 -1.2482 20 1 1.6446 -1.7392 -1.2685 21 7 1.6041 -0.0031 -2.4461 22 6 0.8173 -0.4989 -3.4505 23 6 0.6617 0.4924 -4.3487 24 7 1.3345 1.5643 -3.9046 25 6 1.8965 1.2767 -2.7623 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7163 -0.1879 2.1394 30 1 1.6442 -1.7391 1.2687 31 1 3.9675 0.2406 1.2058 32 1 3.9379 -1.3025 2.0921 33 1 5.7782 -2.0943 -0.9529 34 1 5.9582 -0.7057 0.1459 35 1 5.5472 -2.1900 2.0892 36 1 5.3672 -3.5787 0.9904 37 1 7.6872 -3.2390 0.1824 38 1 7.8664 -1.8504 1.2814 39 1 10.9439 -3.8045 1.8053 40 1 3.9674 0.2394 -1.2062 41 1 3.9376 -1.3046 -2.0910 42 1 0.4012 -1.4937 -3.5110 43 1 0.0938 0.4346 -5.2656 44 1 2.4982 1.9498 -2.1697 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136088405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:37 Heat of formation + Delta-G solvation = 30.054550 kcal Electronic energy + Delta-G solvation = -21610.494942 eV Core-core repulsion = 18562.305709 eV Total energy + Delta-G solvation = -3048.189233 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.09448 -40.27817 -37.02910 -35.36573 -34.08704 -33.13573 -30.86185 -30.08138 -29.54936 -27.40538 -24.74187 -24.64804 -22.95018 -22.58056 -22.09543 -21.37453 -20.38163 -18.62432 -18.22555 -16.73622 -16.59608 -16.32940 -16.17253 -15.77934 -15.33100 -15.16323 -14.86064 -14.66244 -14.56235 -14.32882 -14.06528 -13.71795 -13.57505 -13.39775 -13.04677 -12.93693 -12.63808 -12.48497 -12.42150 -12.29376 -11.82875 -11.68370 -11.66748 -11.39839 -11.29480 -11.11274 -10.91391 -10.54491 -10.46630 -9.41936 -9.37916 -8.20244 -6.31317 1.16785 1.40298 1.43178 1.51114 1.76729 2.25142 2.40900 2.90156 3.13150 3.41799 3.58693 3.75613 3.83128 3.92715 4.06228 4.13487 4.21181 4.33176 4.35540 4.45419 4.51065 4.56097 4.65496 4.69234 4.73808 4.78709 4.82186 4.87390 4.96800 5.01513 5.07498 5.11167 5.24086 5.27899 5.30139 5.45244 5.51899 5.73870 5.85819 5.86445 5.96940 6.07428 6.26131 6.30208 6.85902 7.16716 7.38153 8.91507 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032874 B = 0.003088 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.522939 B = 9065.205341 C = 9591.179424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.075 0.925 4 C -0.099 4.099 5 C 0.043 3.957 6 N -0.535 5.535 7 C 0.070 3.930 8 C -0.087 4.087 9 C 0.025 3.975 10 C -0.543 4.543 11 H 0.061 0.939 12 C -0.001 4.001 13 N -0.935 5.935 14 Si 0.964 3.036 15 H -0.266 1.266 16 H -0.284 1.284 17 H -0.266 1.266 18 C 0.052 3.948 19 C 0.151 3.849 20 H 0.115 0.885 21 N -0.444 5.444 22 C -0.047 4.047 23 C -0.057 4.057 24 N -0.534 5.534 25 C 0.173 3.827 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.054 0.946 36 H 0.054 0.946 37 H -0.010 1.010 38 H -0.011 1.011 39 H 0.263 0.737 40 H 0.039 0.961 41 H 0.072 0.928 42 H 0.198 0.802 43 H 0.181 0.819 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.485 6.949 -4.549 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.094 0.906 4 C -0.137 4.137 5 C -0.084 4.084 6 N -0.260 5.260 7 C -0.058 4.058 8 C -0.125 4.125 9 C -0.012 4.012 10 C -0.581 4.581 11 H 0.079 0.921 12 C -0.199 4.199 13 N -0.575 5.575 14 Si 0.789 3.211 15 H -0.191 1.191 16 H -0.210 1.210 17 H -0.191 1.191 18 C -0.077 4.077 19 C 0.048 3.952 20 H 0.133 0.867 21 N -0.126 5.126 22 C -0.180 4.180 23 C -0.204 4.204 24 N -0.253 5.253 25 C -0.109 4.109 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.215 0.785 43 H 0.198 0.802 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -21.430 7.166 -4.868 23.115 hybrid contribution 1.311 -0.435 0.722 1.558 sum -20.119 6.731 -4.146 21.617 Atomic orbital electron populations 1.21726 0.93286 1.02530 1.01976 1.21504 0.97170 0.99555 0.93052 0.90637 1.21587 0.92984 1.01826 0.97303 1.22308 0.96775 0.96454 0.92887 1.61854 1.12608 1.49444 1.02046 1.21996 0.86230 0.97957 0.99622 1.21382 0.95799 0.98389 0.96941 1.18970 0.92209 0.94845 0.95221 1.21672 0.92844 1.28187 1.15351 0.92087 1.25989 0.96736 0.98076 0.99103 1.70091 1.01167 1.46004 1.40246 0.85512 0.76973 0.79297 0.79354 1.19129 1.20958 1.19060 1.22292 0.94120 0.97549 0.93744 1.21495 0.93952 0.97199 0.82564 0.86743 1.45669 1.37488 1.11464 1.17966 1.23176 1.01667 1.02330 0.90843 1.22652 1.05244 0.90068 1.02411 1.70272 1.13994 1.30237 1.10791 1.25101 1.04005 0.86037 0.95778 0.91175 0.93744 0.91782 0.88930 0.90416 0.94775 0.90456 0.91607 0.95563 0.92716 0.92758 0.99173 0.99241 0.92795 0.94240 0.90933 0.78512 0.80154 0.77271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.07 71.98 0.65 -1.10 16 2 C -0.09 -1.35 2.23 -10.71 -0.02 -1.37 16 3 H 0.08 1.12 7.88 -2.39 -0.02 1.10 16 4 C -0.10 -1.53 5.38 30.65 0.16 -1.36 16 5 C 0.04 0.95 5.29 86.33 0.46 1.41 16 6 N -0.53 -13.56 4.66 -896.35 -4.17 -17.73 16 7 C 0.07 2.27 4.96 86.30 0.43 2.70 16 8 C -0.09 -3.47 5.09 30.59 0.16 -3.31 16 9 C 0.03 1.31 4.97 29.85 0.15 1.46 16 10 C -0.54 -30.71 9.11 25.60 0.23 -30.47 16 11 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 12 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 13 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 14 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 18 C 0.05 1.10 4.81 86.33 0.42 1.52 16 19 C 0.15 2.52 2.44 45.04 0.11 2.63 16 20 H 0.11 1.84 8.08 -2.39 -0.02 1.82 16 21 N -0.44 -8.02 1.98 -506.24 -1.00 -9.02 16 22 C -0.05 -0.81 11.55 83.09 0.96 0.15 16 23 C -0.06 -1.17 11.87 83.53 0.99 -0.18 16 24 N -0.53 -13.45 11.25 -200.31 -2.25 -15.70 16 25 C 0.17 3.62 11.50 180.26 2.07 5.69 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.04 0.68 7.69 -2.39 -0.02 0.66 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 1.91 6.22 -2.39 -0.01 1.90 16 33 H 0.07 2.20 7.98 -2.39 -0.02 2.18 16 34 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16 35 H 0.05 2.09 6.44 -2.39 -0.02 2.08 16 36 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 37 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.04 0.84 7.93 -2.39 -0.02 0.83 16 41 H 0.07 1.68 8.01 -2.39 -0.02 1.67 16 42 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 43 H 0.18 2.91 8.06 -2.91 -0.02 2.88 16 44 H 0.21 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -67.16 349.45 3.05 -64.11 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.94 Total: 10.92 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 7.23 Total: -21.86 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -7.14 Total: -99.13 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -67.16 3.05 -64.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136088405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.163 kcal (2) G-P(sol) polarization free energy of solvation -67.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds