Wall clock time and date at job start Mon Mar 30 2020 01:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.40040 * 119.99978 * 180.02562 * 2 1 3 5 5 C 1.39415 * 120.40935 * 359.97438 * 4 2 1 6 6 C 1.38285 * 118.44608 * 179.97438 * 5 4 2 7 7 C 1.39084 * 119.17061 * 0.02562 * 6 5 4 8 8 N 1.39315 * 119.62657 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99819 * 359.97438 * 8 7 6 10 10 C 1.52997 * 109.47282 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.47192 * 300.00011 * 10 9 8 12 12 C 1.52999 * 109.47221 * 60.00156 * 10 9 8 13 13 C 1.52994 * 109.47262 * 179.97438 * 10 9 8 14 14 C 1.50706 * 109.47306 * 179.97438 * 13 10 9 15 15 H 1.07992 * 119.99656 * 0.02562 * 14 13 10 16 16 C 1.37877 * 120.00028 * 179.97438 * 14 13 10 17 17 N 1.31514 * 119.99921 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00018 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47239 * 60.00097 * 18 16 14 20 20 H 1.48504 * 109.47330 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47094 * 300.00125 * 18 16 14 22 22 N 1.32324 * 120.75293 * 0.02562 * 7 6 5 23 23 C 1.31993 * 121.69236 * 359.68765 * 22 7 6 24 24 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 25 25 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 26 26 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 27 27 H 1.08994 * 109.47354 * 90.00240 * 3 2 1 28 28 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 29 29 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 30 30 H 1.07994 * 120.77714 * 359.96692 * 5 4 2 31 31 H 1.07995 * 120.41403 * 179.97438 * 6 5 4 32 32 H 0.96996 * 120.00636 * 179.97438 * 8 7 6 33 33 H 1.09004 * 109.47187 * 300.00046 * 9 8 7 34 34 H 1.09000 * 109.46754 * 59.99734 * 9 8 7 35 35 H 1.09000 * 109.46627 * 59.99699 * 11 10 9 36 36 H 1.08995 * 109.46854 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.47083 * 300.00365 * 11 10 9 38 38 H 1.08997 * 109.47383 * 59.99792 * 12 10 9 39 39 H 1.08995 * 109.47273 * 180.02562 * 12 10 9 40 40 H 1.09008 * 109.46958 * 300.00199 * 12 10 9 41 41 H 1.08998 * 109.47439 * 300.00514 * 13 10 9 42 42 H 1.09000 * 109.47043 * 60.00252 * 13 10 9 43 43 H 0.97004 * 119.99881 * 179.97438 * 17 16 14 44 44 H 1.07999 * 119.62221 * 180.31024 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1652 -1.2128 -0.0005 5 6 1.4767 -2.4251 -0.0005 6 6 2.2088 -3.5983 -0.0016 7 6 3.5980 -3.5305 -0.0021 8 7 4.3449 -4.7066 -0.0027 9 6 3.6665 -6.0051 -0.0022 10 6 4.7088 -7.1251 -0.0036 11 6 5.5829 -7.0068 -1.2539 12 6 5.5857 -7.0073 1.2447 13 6 4.0004 -8.4811 -0.0024 14 6 5.0272 -9.5843 -0.0045 15 1 6.0796 -9.3423 -0.0060 16 6 4.6228 -10.9024 -0.0033 17 7 3.3410 -11.1970 -0.0009 18 14 5.8954 -12.2698 -0.0051 19 1 6.7472 -12.1549 1.2059 20 1 5.2077 -13.5861 -0.0041 21 1 6.7429 -12.1556 -1.2191 22 7 4.2184 -2.3618 -0.0011 23 6 3.5515 -1.2227 -0.0056 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5139 27 1 2.3792 1.5834 1.0276 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5139 30 1 0.3970 -2.4475 0.0004 31 1 1.7081 -4.5552 -0.0013 32 1 5.3140 -4.6657 -0.0034 33 1 3.0435 -6.0892 0.8883 34 1 3.0421 -6.0892 -0.8917 35 1 6.0875 -6.0406 -1.2542 36 1 6.3257 -7.8044 -1.2546 37 1 4.9582 -7.0906 -2.1432 38 1 4.9631 -7.0916 2.1353 39 1 6.3285 -7.8049 1.2434 40 1 6.0904 -6.0411 1.2443 41 1 3.3780 -8.5652 0.8884 42 1 3.3755 -8.5653 -0.8915 43 1 3.0565 -12.1244 -0.0005 44 1 4.0920 -0.2877 -0.0097 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150897119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:30 Heat of formation + Delta-G solvation = 21.764525 kcal Electronic energy + Delta-G solvation = -21243.077413 eV Core-core repulsion = 18194.528698 eV Total energy + Delta-G solvation = -3048.548715 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.22697 -39.25695 -37.61703 -35.32097 -33.99899 -33.07483 -30.26292 -29.14163 -28.75800 -27.95614 -27.42192 -25.44941 -24.39376 -23.95823 -21.83620 -19.76489 -18.66246 -18.34859 -17.86103 -17.19057 -16.48350 -16.06867 -15.77644 -15.69619 -15.55379 -14.91250 -14.72738 -14.64257 -14.24902 -14.09362 -13.92263 -13.80394 -13.47404 -13.28510 -12.87752 -12.84390 -12.73089 -12.62583 -12.46201 -12.31365 -12.19356 -11.96347 -11.65994 -11.36388 -10.97572 -10.84252 -10.60664 -10.48494 -10.33456 -9.53612 -8.12833 -7.65036 -6.19398 0.40729 0.74945 1.42914 1.44393 1.51604 2.25457 2.43618 2.52903 3.09616 3.21647 3.79418 3.98168 4.01628 4.13078 4.17652 4.23673 4.28328 4.36398 4.55223 4.59692 4.74114 4.75408 4.78115 4.84833 4.88983 4.94348 4.98964 4.99435 5.08603 5.13122 5.14797 5.19004 5.44247 5.50268 5.51565 5.53463 5.58992 5.82760 5.91675 6.19395 6.35395 6.41842 6.50416 6.86633 6.95177 7.39507 7.47700 8.99248 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.044676 B = 0.002972 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.581162 B = 9420.121223 C = 9839.730897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.644 5.644 3 C 0.092 3.908 4 C 0.101 3.899 5 C -0.110 4.110 6 C -0.202 4.202 7 C 0.338 3.662 8 N -0.723 5.723 9 C 0.155 3.845 10 C -0.063 4.063 11 C -0.120 4.120 12 C -0.120 4.120 13 C 0.043 3.957 14 C -0.516 4.516 15 H 0.067 0.933 16 C -0.002 4.002 17 N -0.936 5.936 18 Si 0.954 3.046 19 H -0.269 1.269 20 H -0.289 1.289 21 H -0.269 1.269 22 N -0.532 5.532 23 C 0.063 3.937 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.150 0.850 31 H 0.131 0.869 32 H 0.401 0.599 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.058 0.942 41 H -0.008 1.008 42 H -0.009 1.009 43 H 0.260 0.740 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.892 24.016 -0.009 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.360 5.360 3 C -0.050 4.050 4 C -0.003 4.003 5 C -0.140 4.140 6 C -0.228 4.228 7 C 0.102 3.898 8 N -0.359 5.359 9 C 0.030 3.970 10 C -0.063 4.063 11 C -0.177 4.177 12 C -0.177 4.177 13 C 0.005 3.995 14 C -0.554 4.554 15 H 0.085 0.915 16 C -0.199 4.199 17 N -0.577 5.577 18 Si 0.780 3.220 19 H -0.194 1.194 20 H -0.214 1.214 21 H -0.194 1.194 22 N -0.249 5.249 23 C -0.098 4.098 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.168 0.832 31 H 0.149 0.851 32 H 0.237 0.763 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.069 0.931 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.316 23.894 -0.004 24.123 hybrid contribution -0.288 -1.292 0.000 1.324 sum -3.604 22.602 -0.004 22.887 Atomic orbital electron populations 1.21703 0.78620 1.03296 1.01408 1.46312 1.05429 1.02344 1.81912 1.21726 0.97384 0.84362 1.01560 1.18668 0.92469 0.87348 1.01862 1.21117 1.00801 0.90054 1.02078 1.21404 0.92715 0.99893 1.08784 1.18424 0.88827 0.86372 0.96147 1.44455 1.08240 1.01390 1.81839 1.21229 0.94694 0.81034 1.00033 1.20662 0.95312 0.94062 0.96298 1.21658 0.99218 1.00609 0.96203 1.21658 0.99207 1.00608 0.96221 1.18947 0.94703 0.91089 0.94732 1.21561 0.93756 0.91238 1.48818 0.91544 1.25869 0.96911 1.01577 0.95518 1.70089 1.16070 1.18970 1.52552 0.85662 0.79188 0.78161 0.79011 1.19399 1.21449 1.19407 1.66995 1.41051 0.97598 1.19246 1.22279 0.89941 0.95523 1.02063 0.93280 0.89871 0.91704 0.93099 0.91429 0.89866 0.83202 0.85068 0.76282 0.93070 0.93068 0.92352 0.92966 0.94149 0.94155 0.92968 0.92356 0.99009 0.99014 0.93134 0.81391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 10.22 127.77 1.31 2.39 16 2 N -0.64 -10.66 3.42 -746.65 -2.55 -13.21 16 3 C 0.09 1.02 10.21 127.77 1.30 2.33 16 4 C 0.10 2.28 6.57 38.21 0.25 2.53 16 5 C -0.11 -2.62 9.30 22.56 0.21 -2.41 16 6 C -0.20 -5.75 9.32 22.48 0.21 -5.54 16 7 C 0.34 10.61 7.65 132.97 1.02 11.63 16 8 N -0.72 -22.87 5.14 -344.88 -1.77 -24.64 16 9 C 0.15 5.33 3.78 86.38 0.33 5.66 16 10 C -0.06 -2.44 0.54 -52.18 -0.03 -2.47 16 11 C -0.12 -4.36 8.05 71.98 0.58 -3.78 16 12 C -0.12 -4.36 8.05 71.98 0.58 -3.78 16 13 C 0.04 2.15 4.04 29.85 0.12 2.27 16 14 C -0.52 -27.87 7.65 25.60 0.20 -27.67 16 15 H 0.07 3.43 5.68 -2.91 -0.02 3.41 16 16 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 17 N -0.94 -56.30 13.29 21.45 0.28 -56.01 16 18 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 N -0.53 -16.24 10.39 -192.61 -2.00 -18.24 16 23 C 0.06 1.58 10.38 84.76 0.88 2.46 16 24 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.08 0.65 8.07 -2.39 -0.02 0.63 16 26 H 0.06 0.77 6.25 -2.38 -0.01 0.76 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.74 6.21 -2.39 -0.01 0.72 16 29 H 0.08 0.60 8.07 -2.38 -0.02 0.58 16 30 H 0.15 2.79 6.27 -2.91 -0.02 2.77 16 31 H 0.13 3.65 6.70 -2.91 -0.02 3.63 16 32 H 0.40 12.35 6.29 -92.71 -0.58 11.76 16 33 H 0.05 1.79 7.93 -2.38 -0.02 1.77 16 34 H 0.05 1.79 7.93 -2.39 -0.02 1.77 16 35 H 0.06 1.81 6.86 -2.39 -0.02 1.80 16 36 H 0.05 2.03 6.62 -2.39 -0.02 2.01 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 2.03 6.62 -2.39 -0.02 2.01 16 40 H 0.06 1.81 6.86 -2.38 -0.02 1.79 16 41 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 44 H 0.17 3.26 6.14 -2.91 -0.02 3.24 16 Total: -1.00 -65.16 343.97 3.81 -61.35 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.41 Total: 20.82 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 7.41 Total: -16.02 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -6.04 Total: -112.11 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -65.16 3.81 -61.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150897119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.118 kcal (2) G-P(sol) polarization free energy of solvation -65.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds