Wall clock time and date at job start Mon Mar 30 2020 02:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34953 * 126.03479 * 2 1 4 4 C 1.35318 * 107.74439 * 180.14750 * 3 2 1 5 5 C 1.50698 * 126.03996 * 179.87343 * 4 3 2 6 6 C 1.52998 * 109.47167 * 269.72087 * 5 4 3 7 7 C 1.53000 * 109.46949 * 179.97438 * 6 5 4 8 8 N 1.46508 * 109.47144 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99947 * 269.99887 * 8 7 6 10 10 H 1.07996 * 119.99550 * 141.73026 * 9 8 7 11 11 C 1.38809 * 120.00313 * 321.73762 * 9 8 7 12 12 N 1.31625 * 119.99493 * 339.31913 * 11 9 8 13 13 Si 1.86797 * 120.00135 * 159.32276 * 11 9 8 14 14 H 1.48492 * 109.47608 * 59.99683 * 13 11 9 15 15 H 1.48506 * 109.46921 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47251 * 299.99218 * 13 11 9 17 17 C 1.46498 * 119.99718 * 89.99952 * 8 7 6 18 18 C 1.54960 * 110.91898 * 130.92337 * 17 8 7 19 19 C 1.54272 * 104.15930 * 156.29669 * 18 17 8 20 20 C 1.53878 * 106.63616 * 336.44245 * 19 18 17 21 21 C 1.54262 * 106.60212 * 359.97438 * 20 19 18 22 22 C 1.39868 * 107.91853 * 359.61407 * 4 3 2 23 23 N 1.30834 * 108.20353 * 0.23743 * 22 4 3 24 24 H 1.09000 * 109.47398 * 270.25461 * 1 2 3 25 25 H 1.08994 * 109.47461 * 30.25818 * 1 2 3 26 26 H 1.09010 * 109.46846 * 150.25841 * 1 2 3 27 27 H 1.07994 * 126.12539 * 0.02562 * 3 2 1 28 28 H 1.08992 * 109.47281 * 149.71621 * 5 4 3 29 29 H 1.09006 * 109.46618 * 29.71565 * 5 4 3 30 30 H 1.08992 * 109.47400 * 59.99607 * 6 5 4 31 31 H 1.09000 * 109.46616 * 299.99546 * 6 5 4 32 32 H 1.09007 * 109.47120 * 60.00053 * 7 6 5 33 33 H 1.09001 * 109.47428 * 299.99790 * 7 6 5 34 34 H 0.96999 * 119.99285 * 180.02562 * 12 11 9 35 35 H 1.09001 * 110.67551 * 7.61609 * 17 8 7 36 36 H 1.09001 * 110.48219 * 37.64156 * 18 17 8 37 37 H 1.08995 * 110.53304 * 274.96938 * 18 17 8 38 38 H 1.09001 * 110.03244 * 217.14000 * 19 18 17 39 39 H 1.08996 * 110.03518 * 95.75144 * 19 18 17 40 40 H 1.09002 * 110.03230 * 119.26208 * 20 19 18 41 41 H 1.09007 * 110.03000 * 240.64160 * 20 19 18 42 42 H 1.08995 * 110.48832 * 142.28467 * 21 20 19 43 43 H 1.09008 * 110.48862 * 264.93440 * 21 20 19 44 44 H 1.08002 * 125.89707 * 180.26424 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7680 1.5454 -0.0072 6 6 5.1824 1.8362 -1.4510 7 6 6.4250 2.7289 -1.4549 8 7 6.8222 3.0069 -2.8374 9 6 7.6998 2.1738 -3.4784 10 1 7.5605 1.9445 -4.5245 11 6 8.7682 1.6238 -2.7836 12 7 9.1873 2.1850 -1.6692 13 14 9.6113 0.0874 -3.4301 14 1 10.1633 0.3572 -4.7819 15 1 10.7147 -0.2950 -2.5126 16 1 8.6266 -1.0213 -3.5098 17 6 6.2805 4.1763 -3.5341 18 6 7.4124 4.9922 -4.2081 19 6 6.7012 5.7586 -5.3425 20 6 5.4267 4.9646 -5.6789 21 6 5.4075 3.7424 -4.7378 22 6 3.5347 -0.7320 0.0035 23 7 2.2892 -1.1327 0.0056 24 1 -0.3634 0.0046 1.0276 25 1 -0.3634 0.8876 -0.5178 26 1 -0.3633 -0.8924 -0.5099 27 1 1.9281 2.1193 0.0004 28 1 5.5820 1.0367 0.5090 29 1 4.5440 2.4826 0.5023 30 1 4.3684 2.3449 -1.9672 31 1 5.4063 0.8990 -1.9605 32 1 7.2393 2.2205 -0.9386 33 1 6.2007 3.6661 -0.9455 34 1 9.9341 1.8009 -1.1838 35 1 5.7095 4.8024 -2.8485 36 1 8.1722 4.3256 -4.6160 37 1 7.8567 5.6890 -3.4974 38 1 7.3481 5.8147 -6.2180 39 1 6.4384 6.7620 -5.0077 40 1 4.5454 5.5824 -5.5066 41 1 5.4548 4.6362 -6.7180 42 1 4.3897 3.5272 -4.4128 43 1 5.8432 2.8737 -5.2316 44 1 4.4055 -1.3709 0.0070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156636783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:04 Heat of formation + Delta-G solvation = 76.878279 kcal Electronic energy + Delta-G solvation = -21780.547301 eV Core-core repulsion = 18734.388498 eV Total energy + Delta-G solvation = -3046.158804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.97061 -37.64465 -35.14796 -33.66959 -32.36562 -30.89076 -29.33107 -27.81281 -27.21891 -26.23838 -24.86284 -22.71435 -20.90350 -20.45232 -19.72187 -19.43434 -19.28954 -16.68868 -16.08548 -15.41782 -15.32791 -14.77054 -14.34837 -14.17431 -13.80103 -13.52876 -13.11026 -12.96839 -12.69031 -12.51595 -12.49315 -12.30160 -11.76236 -11.32015 -11.23999 -10.80147 -10.73746 -10.64033 -10.56394 -10.36210 -10.28294 -10.16570 -9.97336 -9.89810 -9.69155 -9.38537 -9.33662 -9.23843 -8.35720 -8.06963 -6.40188 -5.68027 -3.26891 2.04624 2.65270 3.05802 3.41975 3.47773 3.50831 4.54500 4.57270 4.98750 5.02835 5.23513 5.27777 5.33823 5.36224 5.45149 5.52429 5.62054 5.73931 5.80227 6.05348 6.20357 6.24933 6.26358 6.28772 6.30155 6.43845 6.45113 6.58125 6.63707 6.65644 6.72114 6.86236 6.87940 6.96379 6.98902 7.10612 7.19163 7.23200 7.38119 7.44595 7.83272 7.86829 7.93149 8.64071 9.31488 9.94069 10.52971 11.30441 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.005184 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.251888 B = 5399.590130 C = 6793.330164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.385 5.385 3 C 0.043 3.957 4 C -0.214 4.214 5 C -0.041 4.041 6 C -0.124 4.124 7 C 0.147 3.853 8 N -0.576 5.576 9 C -0.249 4.249 10 H 0.057 0.943 11 C 0.014 3.986 12 N -0.887 5.887 13 Si 0.891 3.109 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.283 1.283 17 C 0.173 3.827 18 C -0.127 4.127 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.137 4.137 22 C 0.053 3.947 23 N -0.306 5.306 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.169 0.831 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.019 0.981 34 H 0.253 0.747 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.068 0.932 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 1.617 2.008 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.169 5.169 3 C -0.101 4.101 4 C -0.225 4.225 5 C -0.080 4.080 6 C -0.164 4.164 7 C 0.021 3.979 8 N -0.294 5.294 9 C -0.379 4.379 10 H 0.075 0.925 11 C -0.186 4.186 12 N -0.530 5.530 13 Si 0.721 3.279 14 H -0.209 1.209 15 H -0.217 1.217 16 H -0.209 1.209 17 C 0.065 3.935 18 C -0.166 4.166 19 C -0.161 4.161 20 C -0.159 4.159 21 C -0.177 4.177 22 C -0.133 4.133 23 N -0.128 5.128 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.187 0.813 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.037 0.963 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.298 0.579 2.144 14.469 hybrid contribution 0.884 -0.101 -0.409 0.979 sum -13.414 0.478 1.735 13.534 Atomic orbital electron populations 1.21746 0.74872 1.04140 1.02838 1.48368 1.06248 1.04016 1.58242 1.22275 0.91007 0.93038 1.03810 1.20362 0.94942 0.94092 1.13126 1.19941 0.92629 0.96715 0.98748 1.22176 0.99384 1.01377 0.93470 1.20958 0.94951 0.95437 0.86578 1.43787 1.49683 1.24723 1.11220 1.18805 1.02848 1.20769 0.95458 0.92531 1.25136 0.95824 0.99550 0.98068 1.69989 1.26219 1.38465 1.18301 0.86564 0.78873 0.84269 0.78233 1.20896 1.21717 1.20939 1.21350 0.92249 0.88222 0.91693 1.22657 0.99591 0.98283 0.96106 1.22091 0.96784 0.98244 0.99017 1.22053 0.97266 0.97527 0.99019 1.22805 0.99464 0.97317 0.98097 1.23847 0.94917 0.95031 0.99525 1.77270 1.01903 1.08362 1.25273 0.91236 0.89784 0.89666 0.81347 0.91399 0.92280 0.94289 0.92453 0.88955 0.96251 0.93675 0.93212 0.90272 0.93245 0.93063 0.93197 0.93173 0.93131 0.93527 0.91366 0.80162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.88 11.47 59.85 0.69 1.57 16 2 N -0.39 -5.17 4.01 -68.16 -0.27 -5.44 16 3 C 0.04 0.59 11.40 -17.22 -0.20 0.39 16 4 C -0.21 -3.31 5.35 -105.05 -0.56 -3.88 16 5 C -0.04 -0.67 5.70 -27.88 -0.16 -0.82 16 6 C -0.12 -2.40 5.52 -26.73 -0.15 -2.55 16 7 C 0.15 3.31 5.30 -4.04 -0.02 3.29 16 8 N -0.58 -13.81 2.48 -163.35 -0.41 -14.22 16 9 C -0.25 -6.56 7.67 -15.06 -0.12 -6.67 16 10 H 0.06 1.52 6.97 -52.49 -0.37 1.16 16 11 C 0.01 0.39 4.97 -17.43 -0.09 0.30 16 12 N -0.89 -24.90 11.47 55.49 0.64 -24.27 16 13 Si 0.89 21.43 29.60 -169.99 -5.03 16.40 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 17 C 0.17 3.61 3.43 -65.90 -0.23 3.38 16 18 C -0.13 -2.58 6.32 -25.03 -0.16 -2.73 16 19 C -0.12 -2.03 6.80 -25.61 -0.17 -2.20 16 20 C -0.12 -1.92 6.80 -25.61 -0.17 -2.10 16 21 C -0.14 -2.58 6.41 -25.07 -0.16 -2.74 16 22 C 0.05 0.83 11.96 -17.37 -0.21 0.62 16 23 N -0.31 -4.90 12.57 30.62 0.39 -4.52 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 2.36 5.54 -51.93 -0.29 2.08 16 33 H 0.02 0.42 7.90 -51.93 -0.41 0.01 16 34 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.05 1.00 7.84 -51.93 -0.41 0.60 16 36 H 0.08 1.82 6.98 -51.93 -0.36 1.46 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.42 6.86 -51.92 -0.36 1.06 16 44 H 0.18 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -30.18 352.94 -8.74 -38.92 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.67 Total: 1.94 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -1.70 Total: -14.13 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.34 Total: -48.44 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.18 -8.74 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156636783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.800 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds