Wall clock time and date at job start Mon Mar 30 2020 02:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34953 * 126.03479 * 2 1 4 4 C 1.35318 * 107.74439 * 180.14750 * 3 2 1 5 5 C 1.50698 * 126.03996 * 179.87343 * 4 3 2 6 6 C 1.52998 * 109.47167 * 269.72087 * 5 4 3 7 7 C 1.53000 * 109.46949 * 179.97438 * 6 5 4 8 8 N 1.46508 * 109.47144 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99947 * 269.99887 * 8 7 6 10 10 H 1.07996 * 119.99550 * 141.73026 * 9 8 7 11 11 C 1.38809 * 120.00313 * 321.73762 * 9 8 7 12 12 N 1.31625 * 119.99493 * 339.31913 * 11 9 8 13 13 Si 1.86797 * 120.00135 * 159.32276 * 11 9 8 14 14 H 1.48492 * 109.47608 * 59.99683 * 13 11 9 15 15 H 1.48506 * 109.46921 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47251 * 299.99218 * 13 11 9 17 17 C 1.46498 * 119.99718 * 89.99952 * 8 7 6 18 18 C 1.54960 * 110.91898 * 130.92337 * 17 8 7 19 19 C 1.54272 * 104.15930 * 156.29669 * 18 17 8 20 20 C 1.53878 * 106.63616 * 336.44245 * 19 18 17 21 21 C 1.54262 * 106.60212 * 359.97438 * 20 19 18 22 22 C 1.39868 * 107.91853 * 359.61407 * 4 3 2 23 23 N 1.30834 * 108.20353 * 0.23743 * 22 4 3 24 24 H 1.09000 * 109.47398 * 270.25461 * 1 2 3 25 25 H 1.08994 * 109.47461 * 30.25818 * 1 2 3 26 26 H 1.09010 * 109.46846 * 150.25841 * 1 2 3 27 27 H 1.07994 * 126.12539 * 0.02562 * 3 2 1 28 28 H 1.08992 * 109.47281 * 149.71621 * 5 4 3 29 29 H 1.09006 * 109.46618 * 29.71565 * 5 4 3 30 30 H 1.08992 * 109.47400 * 59.99607 * 6 5 4 31 31 H 1.09000 * 109.46616 * 299.99546 * 6 5 4 32 32 H 1.09007 * 109.47120 * 60.00053 * 7 6 5 33 33 H 1.09001 * 109.47428 * 299.99790 * 7 6 5 34 34 H 0.96999 * 119.99285 * 180.02562 * 12 11 9 35 35 H 1.09001 * 110.67551 * 7.61609 * 17 8 7 36 36 H 1.09001 * 110.48219 * 37.64156 * 18 17 8 37 37 H 1.08995 * 110.53304 * 274.96938 * 18 17 8 38 38 H 1.09001 * 110.03244 * 217.14000 * 19 18 17 39 39 H 1.08996 * 110.03518 * 95.75144 * 19 18 17 40 40 H 1.09002 * 110.03230 * 119.26208 * 20 19 18 41 41 H 1.09007 * 110.03000 * 240.64160 * 20 19 18 42 42 H 1.08995 * 110.48832 * 142.28467 * 21 20 19 43 43 H 1.09008 * 110.48862 * 264.93440 * 21 20 19 44 44 H 1.08002 * 125.89707 * 180.26424 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7680 1.5454 -0.0072 6 6 5.1824 1.8362 -1.4510 7 6 6.4250 2.7289 -1.4549 8 7 6.8222 3.0069 -2.8374 9 6 7.6998 2.1738 -3.4784 10 1 7.5605 1.9445 -4.5245 11 6 8.7682 1.6238 -2.7836 12 7 9.1873 2.1850 -1.6692 13 14 9.6113 0.0874 -3.4301 14 1 10.1633 0.3572 -4.7819 15 1 10.7147 -0.2950 -2.5126 16 1 8.6266 -1.0213 -3.5098 17 6 6.2805 4.1763 -3.5341 18 6 7.4124 4.9922 -4.2081 19 6 6.7012 5.7586 -5.3425 20 6 5.4267 4.9646 -5.6789 21 6 5.4075 3.7424 -4.7378 22 6 3.5347 -0.7320 0.0035 23 7 2.2892 -1.1327 0.0056 24 1 -0.3634 0.0046 1.0276 25 1 -0.3634 0.8876 -0.5178 26 1 -0.3633 -0.8924 -0.5099 27 1 1.9281 2.1193 0.0004 28 1 5.5820 1.0367 0.5090 29 1 4.5440 2.4826 0.5023 30 1 4.3684 2.3449 -1.9672 31 1 5.4063 0.8990 -1.9605 32 1 7.2393 2.2205 -0.9386 33 1 6.2007 3.6661 -0.9455 34 1 9.9341 1.8009 -1.1838 35 1 5.7095 4.8024 -2.8485 36 1 8.1722 4.3256 -4.6160 37 1 7.8567 5.6890 -3.4974 38 1 7.3481 5.8147 -6.2180 39 1 6.4384 6.7620 -5.0077 40 1 4.5454 5.5824 -5.5066 41 1 5.4548 4.6362 -6.7180 42 1 4.3897 3.5272 -4.4128 43 1 5.8432 2.8737 -5.2316 44 1 4.4055 -1.3709 0.0070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156636783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:04 Heat of formation + Delta-G solvation = 61.478986 kcal Electronic energy + Delta-G solvation = -21781.215065 eV Core-core repulsion = 18734.388498 eV Total energy + Delta-G solvation = -3046.826567 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.05619 -39.26860 -36.72163 -35.05564 -33.65662 -32.67698 -30.63413 -29.31039 -28.39717 -27.83782 -26.37968 -24.30594 -22.06708 -21.94853 -21.07957 -20.93824 -20.77590 -18.17151 -17.53566 -17.13305 -16.40340 -16.27131 -16.02448 -15.46358 -15.17626 -15.08379 -14.44619 -14.27763 -14.01115 -13.79053 -13.74842 -13.42315 -13.15085 -12.99382 -12.93829 -12.63679 -12.39440 -12.23417 -12.10970 -11.91043 -11.78886 -11.68803 -11.67716 -11.42082 -11.12219 -11.09713 -11.03040 -10.38295 -10.31140 -9.21505 -8.37420 -7.70151 -5.33224 0.98163 1.46220 1.49401 1.54796 1.75710 1.87530 2.55693 3.32566 3.66478 3.73697 4.05282 4.05656 4.06724 4.29042 4.33742 4.39845 4.46389 4.53349 4.68010 4.69817 4.77439 4.78548 4.85575 4.92829 4.96194 4.98157 5.02331 5.05603 5.15712 5.24966 5.25939 5.32602 5.36042 5.47552 5.60712 5.67057 5.67787 5.72184 5.79027 5.80422 6.00616 6.22387 6.59271 6.75731 7.30423 8.02241 8.53141 9.22851 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.005184 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.251888 B = 5399.590130 C = 6793.330164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.382 5.382 3 C 0.059 3.941 4 C -0.243 4.243 5 C -0.028 4.028 6 C -0.102 4.102 7 C 0.148 3.852 8 N -0.592 5.592 9 C -0.244 4.244 10 H 0.046 0.954 11 C -0.031 4.031 12 N -0.915 5.915 13 Si 0.942 3.058 14 H -0.279 1.279 15 H -0.293 1.293 16 H -0.284 1.284 17 C 0.163 3.837 18 C -0.127 4.127 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.130 4.130 22 C 0.035 3.965 23 N -0.336 5.336 24 H 0.088 0.912 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.206 0.794 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.025 0.975 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.249 0.751 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.040 0.960 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.111 3.017 1.432 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.165 5.165 3 C -0.087 4.087 4 C -0.254 4.254 5 C -0.067 4.067 6 C -0.142 4.142 7 C 0.022 3.978 8 N -0.311 5.311 9 C -0.375 4.375 10 H 0.064 0.936 11 C -0.228 4.228 12 N -0.559 5.559 13 Si 0.771 3.229 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.210 1.210 17 C 0.056 3.944 18 C -0.166 4.166 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.170 4.170 22 C -0.150 4.150 23 N -0.158 5.158 24 H 0.106 0.894 25 H 0.132 0.868 26 H 0.106 0.894 27 H 0.222 0.778 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -16.938 1.971 1.552 17.122 hybrid contribution 1.589 -0.484 -0.225 1.676 sum -15.349 1.487 1.326 15.478 Atomic orbital electron populations 1.22179 0.71970 1.05803 1.04605 1.48800 1.07902 1.03291 1.56541 1.22773 0.90240 0.94478 1.01255 1.20320 0.95541 0.93797 1.15766 1.19727 0.92920 0.97716 0.96319 1.21874 0.97914 0.98922 0.95529 1.20896 0.95155 0.95932 0.85830 1.44013 1.49690 1.25702 1.11676 1.18870 1.02767 1.20756 0.95071 0.93617 1.25669 0.96746 1.01787 0.98623 1.70102 1.26821 1.39565 1.19422 0.85746 0.77857 0.81584 0.77699 1.20506 1.21886 1.21033 1.21583 0.92823 0.87522 0.92499 1.22572 0.98851 0.97858 0.97330 1.22040 0.96713 0.98822 0.97668 1.22024 0.97969 0.96221 0.98829 1.22668 0.99066 0.97712 0.97509 1.24005 0.95279 0.95652 1.00032 1.77207 1.02204 1.10023 1.26414 0.89396 0.86780 0.89415 0.77778 0.92632 0.90427 0.93591 0.95578 0.92179 0.95506 0.94207 0.92054 0.93891 0.94170 0.92176 0.90826 0.90462 0.91911 0.92523 0.94116 0.80084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 11.47 127.77 1.47 2.73 16 2 N -0.38 -9.37 4.01 -369.55 -1.48 -10.85 16 3 C 0.06 1.43 11.40 83.54 0.95 2.38 16 4 C -0.24 -7.30 5.35 -20.14 -0.11 -7.41 16 5 C -0.03 -0.88 5.70 29.85 0.17 -0.71 16 6 C -0.10 -3.99 5.52 30.59 0.17 -3.82 16 7 C 0.15 6.78 5.30 86.38 0.46 7.24 16 8 N -0.59 -28.88 2.48 -670.72 -1.66 -30.55 16 9 C -0.24 -13.23 7.67 84.03 0.64 -12.58 16 10 H 0.05 2.55 6.97 -2.91 -0.02 2.53 16 11 C -0.03 -1.72 4.97 84.86 0.42 -1.30 16 12 N -0.91 -53.13 11.47 21.65 0.25 -52.88 16 13 Si 0.94 45.33 29.60 68.60 2.03 47.36 16 14 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 15 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 16 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 17 C 0.16 6.70 3.43 46.31 0.16 6.85 16 18 C -0.13 -5.10 6.32 31.70 0.20 -4.90 16 19 C -0.11 -3.46 6.80 31.32 0.21 -3.25 16 20 C -0.11 -3.21 6.80 31.32 0.21 -3.00 16 21 C -0.13 -4.69 6.41 31.67 0.20 -4.48 16 22 C 0.04 1.12 11.96 85.24 1.02 2.14 16 23 N -0.34 -10.53 12.57 -57.02 -0.72 -11.25 16 24 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.21 3.32 8.06 -2.91 -0.02 3.30 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 3.20 5.54 -2.38 -0.01 3.18 16 33 H 0.03 1.16 7.90 -2.39 -0.02 1.14 16 34 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.06 2.37 7.84 -2.39 -0.02 2.35 16 36 H 0.04 2.02 6.98 -2.39 -0.02 2.00 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 1.68 6.86 -2.38 -0.02 1.66 16 44 H 0.18 5.37 8.06 -2.91 -0.02 5.34 16 Total: -1.00 -67.36 352.94 5.54 -61.82 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.95 Total: 16.48 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 6.18 Total: -20.12 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -3.62 Total: -105.53 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -67.36 5.54 -61.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156636783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.295 kcal (2) G-P(sol) polarization free energy of solvation -67.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds