Wall clock time and date at job start Mon Mar 30 2020 01:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47309 * 2 1 4 4 C 1.52997 * 109.47397 * 173.74831 * 3 2 1 5 5 C 1.53000 * 109.47046 * 184.99968 * 4 3 2 6 6 C 1.53004 * 109.47102 * 293.74897 * 3 2 1 7 7 N 1.46497 * 109.47174 * 295.59223 * 6 3 2 8 8 C 1.46506 * 119.99301 * 272.95672 * 7 6 3 9 9 C 1.50698 * 109.47135 * 264.81469 * 8 7 6 10 10 H 1.07994 * 119.99894 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99853 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00025 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99972 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47280 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47438 * 119.99975 * 13 11 9 16 16 H 1.48499 * 109.47458 * 240.00221 * 13 11 9 17 17 C 1.38534 * 120.00397 * 92.95847 * 7 6 3 18 18 C 1.39659 * 120.53126 * 185.00217 * 17 7 6 19 19 C 1.38079 * 118.33435 * 179.74531 * 18 17 7 20 20 N 1.32576 * 119.19832 * 0.25243 * 19 18 17 21 21 C 1.31765 * 121.01351 * 359.97438 * 20 19 18 22 22 C 1.50697 * 119.08238 * 180.02562 * 21 20 19 23 23 N 1.31771 * 121.83093 * 0.03058 * 21 20 19 24 24 H 1.09006 * 109.46753 * 62.33128 * 1 2 3 25 25 H 1.08997 * 109.46734 * 182.33162 * 1 2 3 26 26 H 1.08993 * 109.46912 * 302.33599 * 1 2 3 27 27 H 1.08999 * 109.47306 * 240.00074 * 2 1 3 28 28 H 1.08997 * 109.46744 * 119.99526 * 2 1 3 29 29 H 1.09000 * 109.47093 * 53.74724 * 3 2 1 30 30 H 1.08998 * 109.46913 * 304.99877 * 4 3 2 31 31 H 1.09003 * 109.47123 * 64.99872 * 4 3 2 32 32 H 1.08998 * 109.47191 * 299.99739 * 5 4 3 33 33 H 1.08998 * 109.47554 * 60.00324 * 5 4 3 34 34 H 1.09007 * 109.47049 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.46897 * 175.58614 * 6 3 2 36 36 H 1.09000 * 109.47059 * 55.58705 * 6 3 2 37 37 H 1.08996 * 109.47155 * 24.81972 * 8 7 6 38 38 H 1.09008 * 109.46518 * 144.81619 * 8 7 6 39 39 H 0.97000 * 120.00161 * 179.97438 * 12 11 9 40 40 H 1.08003 * 120.83412 * 0.02562 * 18 17 7 41 41 H 1.08003 * 120.40313 * 180.22842 * 19 18 17 42 42 H 1.09000 * 109.47049 * 90.00447 * 22 21 20 43 43 H 1.09001 * 109.47063 * 210.00572 * 22 21 20 44 44 H 1.08997 * 109.47349 * 330.00198 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5620 1.4454 0.1571 5 6 4.0590 2.8870 0.2822 6 6 1.6624 2.1170 -1.3204 7 7 2.3538 1.4485 -2.4255 8 6 3.7037 1.8709 -2.8073 9 6 3.6187 2.8614 -3.9399 10 1 2.6555 3.1479 -4.3354 11 6 4.7706 3.4017 -4.4711 12 7 5.9435 3.0531 -3.9890 13 14 4.6652 4.6299 -5.8745 14 1 3.2410 4.8529 -6.2313 15 1 5.2778 5.9157 -5.4541 16 1 5.3929 4.0972 -7.0543 17 6 1.7312 0.4172 -3.1095 18 6 2.4172 -0.2965 -4.0947 19 6 1.7546 -1.3191 -4.7442 20 7 0.4974 -1.5850 -4.4181 21 6 -0.1240 -0.8899 -3.4870 22 6 -1.5531 -1.2297 -3.1505 23 7 0.4695 0.0940 -2.8419 24 1 -0.3633 0.4772 -0.9102 25 1 -0.3633 -1.0268 0.0418 26 1 -0.3633 0.5496 0.8683 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5883 1.9876 0.8287 30 1 3.8358 0.8876 1.0526 31 1 4.0182 0.9782 -0.7157 32 1 3.7852 3.4447 -0.6133 33 1 3.6029 3.3541 1.1550 34 1 5.1434 2.8890 0.3937 35 1 1.9562 3.1662 -1.2894 36 1 0.5850 2.0456 -1.4697 37 1 4.1938 2.3373 -1.9527 38 1 4.2794 1.0021 -3.1268 39 1 6.7539 3.4329 -4.3630 40 1 3.4417 -0.0577 -4.3391 41 1 2.2543 -1.8951 -5.5090 42 1 -1.5717 -1.9758 -2.3561 43 1 -2.0714 -0.3307 -2.8169 44 1 -2.0497 -1.6283 -4.0350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165825570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:14 Heat of formation + Delta-G solvation = 39.708566 kcal Electronic energy + Delta-G solvation = -23107.428851 eV Core-core repulsion = 20059.658248 eV Total energy + Delta-G solvation = -3047.770603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.37437 -38.09337 -34.85462 -33.14640 -32.61882 -31.76126 -31.00133 -28.58641 -27.50945 -26.28411 -24.97615 -23.37601 -22.47008 -21.47284 -20.61305 -19.19132 -16.85839 -16.68225 -16.50294 -15.37539 -14.81736 -14.59840 -14.44000 -14.34878 -13.65276 -13.47110 -13.33092 -12.93317 -12.66129 -12.47962 -12.30670 -12.15564 -12.11680 -11.89364 -11.32661 -11.21752 -11.15571 -11.00515 -10.74919 -10.53197 -10.46996 -10.24487 -10.18637 -9.94862 -9.89416 -9.72729 -9.56173 -8.93421 -8.57696 -8.43239 -7.01326 -6.17539 -4.26348 1.76125 2.12987 3.19940 3.28862 3.33339 3.74531 4.31866 4.54645 4.65160 4.90755 5.13838 5.18278 5.26121 5.31328 5.53148 5.69430 5.78151 5.81699 5.83530 5.86329 5.90953 5.96775 6.01871 6.06978 6.08318 6.25933 6.31731 6.34002 6.38053 6.40897 6.44291 6.56299 6.61065 6.78296 6.81855 6.89385 6.97474 7.13233 7.19912 7.53700 7.75726 8.04823 8.19486 8.24886 8.79471 8.99626 9.40835 10.86331 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.007494 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.299696 B = 3735.433829 C = 5099.819122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C -0.101 4.101 4 C -0.122 4.122 5 C -0.154 4.154 6 C 0.126 3.874 7 N -0.565 5.565 8 C 0.237 3.763 9 C -0.534 4.534 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.895 3.105 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.451 3.549 18 C -0.282 4.282 19 C 0.158 3.842 20 N -0.583 5.583 21 C 0.342 3.658 22 C -0.077 4.077 23 N -0.581 5.581 24 H 0.090 0.910 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.032 0.968 39 H 0.264 0.736 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 -5.125 6.315 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C -0.121 4.121 4 C -0.160 4.160 5 C -0.211 4.211 6 C 0.002 3.998 7 N -0.273 5.273 8 C 0.118 3.882 9 C -0.573 4.573 10 H 0.077 0.923 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.722 3.278 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.206 3.794 18 C -0.311 4.311 19 C -0.001 4.001 20 N -0.305 5.305 21 C 0.072 3.928 22 C -0.136 4.136 23 N -0.308 5.308 24 H 0.108 0.892 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.164 0.836 41 H 0.170 0.830 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.569 -5.109 6.606 11.965 hybrid contribution 1.218 0.956 -1.044 1.868 sum -7.350 -4.152 5.562 10.110 Atomic orbital electron populations 1.21955 0.95772 1.00687 1.02766 1.21401 0.96258 0.96189 1.00635 1.21629 0.95969 0.96593 0.97875 1.21666 0.95221 0.97373 1.01731 1.21874 1.00671 0.96828 1.01720 1.21450 0.97682 0.95811 0.84870 1.47074 1.17636 1.31391 1.31182 1.19754 0.76023 0.95484 0.96954 1.21564 0.93032 1.25113 1.17615 0.92289 1.24907 0.95135 0.96685 0.97018 1.69924 0.97493 1.43682 1.41906 0.86487 0.78250 0.80972 0.82061 1.19788 1.20858 1.20831 1.18538 0.87560 0.86206 0.87074 1.22301 1.04133 1.01585 1.03065 1.22634 0.89679 0.92631 0.95135 1.68114 1.10814 1.32220 1.19391 1.22628 0.96261 0.86697 0.87248 1.20424 0.88848 1.02172 1.02153 1.67727 1.09780 1.20951 1.32363 0.89150 0.94294 0.94340 0.92411 0.93705 0.91286 0.93268 0.90709 0.91106 0.93773 0.93025 0.90907 0.90114 0.92105 0.95016 0.92602 0.83620 0.82999 0.90585 0.90448 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.08 37.16 0.34 -1.80 16 2 C -0.11 -1.63 4.89 -26.73 -0.13 -1.76 16 3 C -0.10 -1.53 2.20 -90.62 -0.20 -1.73 16 4 C -0.12 -1.95 4.86 -26.73 -0.13 -2.08 16 5 C -0.15 -2.44 8.76 37.16 0.33 -2.11 16 6 C 0.13 2.19 4.89 -4.04 -0.02 2.17 16 7 N -0.57 -11.30 2.06 -175.02 -0.36 -11.66 16 8 C 0.24 5.44 3.46 -5.19 -0.02 5.42 16 9 C -0.53 -13.82 9.36 -34.44 -0.32 -14.14 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -24.25 13.29 55.43 0.74 -23.52 16 13 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 C 0.45 8.98 5.71 -154.79 -0.88 8.10 16 18 C -0.28 -5.57 9.32 -39.11 -0.36 -5.93 16 19 C 0.16 2.79 11.29 -17.29 -0.20 2.60 16 20 N -0.58 -10.45 10.33 -10.81 -0.11 -10.56 16 21 C 0.34 5.84 7.64 -157.24 -1.20 4.64 16 22 C -0.08 -0.98 10.32 36.00 0.37 -0.61 16 23 N -0.58 -10.56 5.63 -9.97 -0.06 -10.61 16 24 H 0.09 1.36 4.50 -51.93 -0.23 1.12 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 1.03 5.87 -51.93 -0.30 0.72 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.38 5.53 -51.93 -0.29 1.10 16 32 H 0.07 1.28 5.27 -51.93 -0.27 1.00 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.07 1.30 6.74 -51.93 -0.35 0.95 16 36 H 0.08 1.39 5.72 -51.93 -0.30 1.09 16 37 H 0.06 1.41 3.86 -51.93 -0.20 1.21 16 38 H 0.03 0.79 6.32 -51.92 -0.33 0.46 16 39 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 40 H 0.15 3.04 6.27 -52.48 -0.33 2.71 16 41 H 0.15 2.20 8.06 -52.48 -0.42 1.78 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -27.31 335.06 -9.09 -36.40 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.80 Total: 4.81 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.53 Total: -5.61 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.21 Total: -56.35 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.31 -9.09 -36.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165825570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.106 kcal (2) G-P(sol) polarization free energy of solvation -27.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds