Wall clock time and date at job start Mon Mar 30 2020 01:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47309 * 2 1 4 4 C 1.52997 * 109.47397 * 173.74831 * 3 2 1 5 5 C 1.53000 * 109.47046 * 184.99968 * 4 3 2 6 6 C 1.53004 * 109.47102 * 293.74897 * 3 2 1 7 7 N 1.46497 * 109.47174 * 295.59223 * 6 3 2 8 8 C 1.46506 * 119.99301 * 272.95672 * 7 6 3 9 9 C 1.50698 * 109.47135 * 264.81469 * 8 7 6 10 10 H 1.07994 * 119.99894 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99853 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00025 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99972 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47280 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47438 * 119.99975 * 13 11 9 16 16 H 1.48499 * 109.47458 * 240.00221 * 13 11 9 17 17 C 1.38534 * 120.00397 * 92.95847 * 7 6 3 18 18 C 1.39659 * 120.53126 * 185.00217 * 17 7 6 19 19 C 1.38079 * 118.33435 * 179.74531 * 18 17 7 20 20 N 1.32576 * 119.19832 * 0.25243 * 19 18 17 21 21 C 1.31765 * 121.01351 * 359.97438 * 20 19 18 22 22 C 1.50697 * 119.08238 * 180.02562 * 21 20 19 23 23 N 1.31771 * 121.83093 * 0.03058 * 21 20 19 24 24 H 1.09006 * 109.46753 * 62.33128 * 1 2 3 25 25 H 1.08997 * 109.46734 * 182.33162 * 1 2 3 26 26 H 1.08993 * 109.46912 * 302.33599 * 1 2 3 27 27 H 1.08999 * 109.47306 * 240.00074 * 2 1 3 28 28 H 1.08997 * 109.46744 * 119.99526 * 2 1 3 29 29 H 1.09000 * 109.47093 * 53.74724 * 3 2 1 30 30 H 1.08998 * 109.46913 * 304.99877 * 4 3 2 31 31 H 1.09003 * 109.47123 * 64.99872 * 4 3 2 32 32 H 1.08998 * 109.47191 * 299.99739 * 5 4 3 33 33 H 1.08998 * 109.47554 * 60.00324 * 5 4 3 34 34 H 1.09007 * 109.47049 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.46897 * 175.58614 * 6 3 2 36 36 H 1.09000 * 109.47059 * 55.58705 * 6 3 2 37 37 H 1.08996 * 109.47155 * 24.81972 * 8 7 6 38 38 H 1.09008 * 109.46518 * 144.81619 * 8 7 6 39 39 H 0.97000 * 120.00161 * 179.97438 * 12 11 9 40 40 H 1.08003 * 120.83412 * 0.02562 * 18 17 7 41 41 H 1.08003 * 120.40313 * 180.22842 * 19 18 17 42 42 H 1.09000 * 109.47049 * 90.00447 * 22 21 20 43 43 H 1.09001 * 109.47063 * 210.00572 * 22 21 20 44 44 H 1.08997 * 109.47349 * 330.00198 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5620 1.4454 0.1571 5 6 4.0590 2.8870 0.2822 6 6 1.6624 2.1170 -1.3204 7 7 2.3538 1.4485 -2.4255 8 6 3.7037 1.8709 -2.8073 9 6 3.6187 2.8614 -3.9399 10 1 2.6555 3.1479 -4.3354 11 6 4.7706 3.4017 -4.4711 12 7 5.9435 3.0531 -3.9890 13 14 4.6652 4.6299 -5.8745 14 1 3.2410 4.8529 -6.2313 15 1 5.2778 5.9157 -5.4541 16 1 5.3929 4.0972 -7.0543 17 6 1.7312 0.4172 -3.1095 18 6 2.4172 -0.2965 -4.0947 19 6 1.7546 -1.3191 -4.7442 20 7 0.4974 -1.5850 -4.4181 21 6 -0.1240 -0.8899 -3.4870 22 6 -1.5531 -1.2297 -3.1505 23 7 0.4695 0.0940 -2.8419 24 1 -0.3633 0.4772 -0.9102 25 1 -0.3633 -1.0268 0.0418 26 1 -0.3633 0.5496 0.8683 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5883 1.9876 0.8287 30 1 3.8358 0.8876 1.0526 31 1 4.0182 0.9782 -0.7157 32 1 3.7852 3.4447 -0.6133 33 1 3.6029 3.3541 1.1550 34 1 5.1434 2.8890 0.3937 35 1 1.9562 3.1662 -1.2894 36 1 0.5850 2.0456 -1.4697 37 1 4.1938 2.3373 -1.9527 38 1 4.2794 1.0021 -3.1268 39 1 6.7539 3.4329 -4.3630 40 1 3.4417 -0.0577 -4.3391 41 1 2.2543 -1.8951 -5.5090 42 1 -1.5717 -1.9758 -2.3561 43 1 -2.0714 -0.3307 -2.8169 44 1 -2.0497 -1.6283 -4.0350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165825570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:14 Heat of formation + Delta-G solvation = 27.799396 kcal Electronic energy + Delta-G solvation = -23107.945271 eV Core-core repulsion = 20059.658248 eV Total energy + Delta-G solvation = -3048.287024 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.80764 -39.49449 -36.32756 -34.89900 -34.13907 -33.07714 -32.41113 -30.10026 -28.91128 -27.81173 -26.30671 -25.17189 -23.86291 -22.70510 -22.11983 -20.53446 -18.75932 -18.15021 -18.00827 -16.84370 -16.64805 -15.96215 -15.87249 -15.73975 -15.02695 -14.97540 -14.73609 -14.41478 -14.15086 -13.83133 -13.54541 -13.44884 -13.32493 -13.07676 -13.00272 -12.92255 -12.51950 -12.41947 -12.36970 -12.14577 -12.13465 -11.69093 -11.57903 -11.34919 -11.27819 -11.20847 -11.11910 -10.59985 -10.41228 -9.86986 -8.65046 -8.13885 -6.35751 0.33650 0.65098 1.34371 1.37908 1.47874 2.18828 2.39804 3.07203 3.12599 3.39535 3.56595 3.92729 3.94293 4.02582 4.11956 4.45226 4.49092 4.59237 4.65398 4.68671 4.69826 4.72722 4.76985 4.84735 4.85935 4.90531 4.95464 5.10159 5.13649 5.15442 5.16436 5.22692 5.25261 5.34741 5.38364 5.51988 5.57936 5.64871 5.71421 5.79802 6.00636 6.09764 6.56625 6.70803 6.82445 7.33810 7.55116 8.82564 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.007494 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.299696 B = 3735.433829 C = 5099.819122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.119 4.119 5 C -0.147 4.147 6 C 0.126 3.874 7 N -0.570 5.570 8 C 0.257 3.743 9 C -0.543 4.543 10 H 0.042 0.958 11 C 0.023 3.977 12 N -0.918 5.918 13 Si 0.952 3.048 14 H -0.276 1.276 15 H -0.275 1.275 16 H -0.278 1.278 17 C 0.438 3.562 18 C -0.312 4.312 19 C 0.168 3.832 20 N -0.590 5.590 21 C 0.333 3.667 22 C -0.073 4.073 23 N -0.576 5.576 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.027 0.973 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.007 0.993 39 H 0.267 0.733 40 H 0.124 0.876 41 H 0.181 0.819 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 -5.361 7.142 13.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C -0.111 4.111 4 C -0.156 4.156 5 C -0.204 4.204 6 C 0.003 3.997 7 N -0.278 5.278 8 C 0.137 3.863 9 C -0.582 4.582 10 H 0.061 0.939 11 C -0.177 4.177 12 N -0.557 5.557 13 Si 0.778 3.222 14 H -0.201 1.201 15 H -0.200 1.200 16 H -0.204 1.204 17 C 0.194 3.806 18 C -0.341 4.341 19 C 0.008 3.992 20 N -0.312 5.312 21 C 0.064 3.936 22 C -0.131 4.131 23 N -0.303 5.303 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.025 0.975 39 H 0.076 0.924 40 H 0.142 0.858 41 H 0.198 0.802 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.394 -5.349 7.446 13.859 hybrid contribution 1.729 0.957 -1.299 2.364 sum -8.665 -4.392 6.148 11.496 Atomic orbital electron populations 1.21866 0.94382 1.01237 1.02947 1.21347 0.97395 0.95621 0.99654 1.21580 0.95412 0.96900 0.97255 1.21606 0.95695 0.97294 1.01023 1.21793 1.00486 0.96614 1.01538 1.21558 0.97528 0.95362 0.85237 1.46898 1.16799 1.31984 1.32127 1.19294 0.77541 0.93649 0.95840 1.21734 0.92307 1.25648 1.18468 0.93946 1.25568 0.94862 0.98203 0.99045 1.70006 0.97983 1.44684 1.43052 0.85599 0.77880 0.79215 0.79516 1.20127 1.20017 1.20393 1.18717 0.88426 0.86283 0.87199 1.22267 1.03622 1.03478 1.04723 1.23064 0.89665 0.91682 0.94798 1.68259 1.10664 1.32428 1.19814 1.23611 0.97891 0.85752 0.86329 1.20567 0.85879 1.03291 1.03386 1.67849 1.08704 1.21333 1.32409 0.90391 0.93705 0.92469 0.95458 0.92553 0.88711 0.91466 0.93994 0.93808 0.91034 0.93647 0.91859 0.89679 0.92416 0.97545 0.92375 0.85811 0.80164 0.88699 0.89272 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.08 71.98 0.65 -3.03 16 2 C -0.10 -2.95 4.89 30.60 0.15 -2.81 16 3 C -0.09 -2.68 2.20 -10.79 -0.02 -2.70 16 4 C -0.12 -3.74 4.86 30.59 0.15 -3.59 16 5 C -0.15 -4.61 8.76 71.98 0.63 -3.98 16 6 C 0.13 4.38 4.89 86.38 0.42 4.80 16 7 N -0.57 -23.53 2.06 -707.65 -1.46 -24.99 16 8 C 0.26 12.42 3.46 85.63 0.30 12.72 16 9 C -0.54 -29.07 9.36 25.60 0.24 -28.83 16 10 H 0.04 2.37 7.81 -2.91 -0.02 2.35 16 11 C 0.02 1.26 5.46 84.65 0.46 1.72 16 12 N -0.92 -51.15 13.29 21.45 0.28 -50.87 16 13 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 17 C 0.44 17.82 5.71 133.18 0.76 18.58 16 18 C -0.31 -12.76 9.32 22.58 0.21 -12.55 16 19 C 0.17 5.89 11.29 84.54 0.95 6.84 16 20 N -0.59 -20.39 10.33 -188.12 -1.94 -22.33 16 21 C 0.33 10.91 7.64 138.77 1.06 11.97 16 22 C -0.07 -1.64 10.32 71.23 0.73 -0.90 16 23 N -0.58 -20.60 5.63 -185.44 -1.04 -21.64 16 24 H 0.08 2.17 4.50 -2.38 -0.01 2.16 16 25 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.03 0.95 5.87 -2.39 -0.01 0.94 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.60 5.53 -2.39 -0.01 1.59 16 32 H 0.04 1.61 5.27 -2.39 -0.01 1.59 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.04 1.44 8.14 -2.38 -0.02 1.43 16 35 H 0.06 2.29 6.74 -2.39 -0.02 2.28 16 36 H 0.08 2.87 5.72 -2.39 -0.01 2.85 16 37 H 0.06 2.82 3.86 -2.39 -0.01 2.81 16 38 H 0.01 0.35 6.32 -2.38 -0.02 0.34 16 39 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 40 H 0.12 5.54 6.27 -2.91 -0.02 5.53 16 41 H 0.18 5.07 8.06 -2.91 -0.02 5.04 16 42 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -59.58 335.06 5.55 -54.03 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.99 Total: 22.47 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 6.70 Total: -1.76 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -4.16 Total: -119.83 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -59.58 5.55 -54.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165825570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.831 kcal (2) G-P(sol) polarization free energy of solvation -59.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds