Wall clock time and date at job start Mon Mar 30 2020 01:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47077 * 2 1 4 4 N 1.46508 * 109.47348 * 119.99980 * 2 1 3 5 5 C 1.36884 * 126.39143 * 299.98107 * 4 2 1 6 6 C 1.34674 * 106.81278 * 179.97438 * 5 4 2 7 7 N 1.34130 * 108.02175 * 0.22462 * 6 5 4 8 8 C 1.30499 * 109.25518 * 359.61985 * 7 6 5 9 9 C 1.50695 * 125.65226 * 180.14538 * 8 7 6 10 10 N 1.46503 * 109.47513 * 270.27733 * 9 8 7 11 11 C 1.36933 * 120.00096 * 84.27614 * 10 9 8 12 12 H 1.08000 * 120.00484 * 212.95104 * 11 10 9 13 13 C 1.38816 * 119.99878 * 32.95346 * 11 10 9 14 14 N 1.31619 * 120.00117 * 24.19894 * 13 11 10 15 15 Si 1.86802 * 120.00091 * 204.19819 * 13 11 10 16 16 H 1.48498 * 109.47206 * 59.99839 * 15 13 11 17 17 H 1.48501 * 109.47173 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47159 * 300.00234 * 15 13 11 19 19 C 1.46498 * 119.99831 * 264.28223 * 10 9 8 20 20 C 1.54264 * 110.03167 * 237.90602 * 19 10 9 21 21 C 1.54960 * 104.16212 * 217.13695 * 20 19 10 22 22 C 1.54896 * 102.77727 * 37.88553 * 21 20 19 23 23 C 1.53872 * 110.03509 * 120.68555 * 19 10 9 24 24 H 1.08995 * 109.47045 * 60.00496 * 1 2 3 25 25 H 1.09004 * 109.46776 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47501 * 299.99749 * 1 2 3 27 27 H 1.09000 * 109.47674 * 239.99736 * 2 1 3 28 28 H 1.09006 * 109.47364 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47277 * 300.00225 * 3 2 1 30 30 H 1.08996 * 109.47156 * 60.00132 * 3 2 1 31 31 H 1.07999 * 126.59523 * 359.97014 * 5 4 2 32 32 H 1.08001 * 125.98569 * 179.97438 * 6 5 4 33 33 H 1.09009 * 109.47135 * 30.27724 * 9 8 7 34 34 H 1.09002 * 109.47581 * 150.27517 * 9 8 7 35 35 H 0.96994 * 119.99955 * 179.97438 * 14 13 11 36 36 H 1.09003 * 110.01714 * 359.29498 * 19 10 9 37 37 H 1.09006 * 110.48720 * 335.78080 * 20 19 10 38 38 H 1.09001 * 110.49154 * 98.42801 * 20 19 10 39 39 H 1.08998 * 110.72081 * 279.57230 * 21 20 19 40 40 H 1.09004 * 110.92935 * 156.29156 * 21 20 19 41 41 H 1.08999 * 110.48455 * 203.41007 * 22 21 20 42 42 H 1.08995 * 110.59847 * 80.81731 * 22 21 20 43 43 H 1.08990 * 110.03608 * 238.56935 * 23 19 10 44 44 H 1.09007 * 110.02952 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7699 -0.3387 2.4955 6 6 2.4051 -1.2381 3.2710 7 7 3.0284 -2.1123 2.4671 8 6 2.7970 -1.7936 1.2230 9 6 3.3174 -2.5308 0.0160 10 7 4.6144 -1.9731 -0.3753 11 6 5.7593 -2.4072 0.2377 12 1 6.5840 -1.7258 0.3864 13 6 5.8602 -3.7231 0.6679 14 7 5.1237 -4.6577 0.1053 15 14 7.0411 -4.1676 2.0454 16 1 6.6755 -3.4159 3.2727 17 1 6.9609 -5.6257 2.3150 18 1 8.4263 -3.8145 1.6430 19 6 4.6864 -0.9509 -1.4222 20 6 5.5992 -1.4323 -2.5689 21 6 6.3438 -0.1517 -3.0238 22 6 6.6008 0.5881 -1.6874 23 6 5.3225 0.3334 -0.8622 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.1784 0.4992 2.8338 32 1 2.4145 -1.2506 4.3509 33 1 3.4342 -3.5872 0.2579 34 1 2.6120 -2.4226 -0.8079 35 1 5.1944 -5.5772 0.4057 36 1 3.6881 -0.7372 -1.8043 37 1 6.3078 -2.1767 -2.2056 38 1 5.0032 -1.8385 -3.3861 39 1 5.7144 0.4471 -3.6820 40 1 7.2848 -0.4019 -3.5139 41 1 6.7356 1.6555 -1.8622 42 1 7.4714 0.1725 -1.1803 43 1 4.6334 1.1705 -0.9732 44 1 5.5772 0.1963 0.1888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172572323.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:05 Heat of formation + Delta-G solvation = 72.049925 kcal Electronic energy + Delta-G solvation = -23427.889121 eV Core-core repulsion = 20381.520944 eV Total energy + Delta-G solvation = -3046.368177 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.29456 -37.76183 -35.59805 -34.34302 -31.12961 -30.09288 -29.34285 -27.98757 -27.24448 -26.62088 -25.52722 -22.65236 -22.16580 -20.11678 -19.93530 -19.14062 -18.70277 -16.78979 -16.02940 -15.42442 -14.90315 -14.70985 -14.35145 -14.03580 -13.55013 -13.39237 -13.33780 -12.91266 -12.64716 -12.53770 -12.49825 -12.23643 -11.98111 -11.32640 -11.25360 -11.07254 -10.90798 -10.82394 -10.55930 -10.44415 -10.29010 -10.25631 -10.06272 -9.98975 -9.84279 -9.54388 -8.92061 -8.79804 -8.37355 -7.52399 -6.62016 -5.71650 -3.23480 2.83515 3.43227 3.50968 3.56874 3.66543 4.08520 4.63126 4.72660 5.02656 5.12938 5.31713 5.34806 5.36474 5.39936 5.45139 5.48478 5.64568 5.68250 5.72168 5.75895 5.85828 5.95536 6.05595 6.15465 6.18271 6.23079 6.26954 6.29924 6.41898 6.49167 6.55939 6.56802 6.65946 6.80139 6.91314 7.12728 7.15628 7.33590 7.55186 7.63804 7.93888 8.09052 8.56150 9.16252 9.22088 9.89433 10.39289 11.30278 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.009390 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.509209 B = 2981.301155 C = 4376.674197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 C -0.164 4.164 4 N -0.455 5.455 5 C -0.088 4.088 6 C -0.037 4.037 7 N -0.483 5.483 8 C 0.233 3.767 9 C 0.208 3.792 10 N -0.563 5.563 11 C -0.249 4.249 12 H 0.060 0.940 13 C 0.026 3.974 14 N -0.885 5.885 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.292 1.292 18 H -0.287 1.287 19 C 0.172 3.828 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.136 4.136 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.131 0.869 34 H 0.036 0.964 35 H 0.255 0.745 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.160 10.974 -3.584 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 C -0.221 4.221 4 N -0.140 5.140 5 C -0.220 4.220 6 C -0.186 4.186 7 N -0.201 5.201 8 C -0.033 4.033 9 C 0.079 3.921 10 N -0.281 5.281 11 C -0.378 4.378 12 H 0.078 0.922 13 C -0.174 4.174 14 N -0.528 5.528 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.218 1.218 18 H -0.214 1.214 19 C 0.064 3.936 20 C -0.169 4.169 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.175 4.175 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.172 0.828 32 H 0.170 0.830 33 H 0.148 0.852 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.736 10.176 -3.423 12.675 hybrid contribution 0.008 0.725 0.786 1.070 sum -6.728 10.902 -2.636 13.079 Atomic orbital electron populations 1.22145 0.94245 1.02838 1.02461 1.21296 0.94487 0.93900 0.87817 1.22244 1.03113 0.94633 1.02157 1.45716 1.39478 1.23322 1.05458 1.22213 1.10669 1.04953 0.84185 1.22181 1.01672 0.95661 0.99068 1.70396 1.22257 1.27306 1.00098 1.25569 0.92797 0.87637 0.97267 1.19738 0.85073 1.00848 0.86403 1.43887 1.01843 1.44082 1.38313 1.18692 0.94322 0.92330 1.32453 0.92207 1.24876 0.98228 0.95231 0.99081 1.69850 1.42690 1.00342 1.39881 0.86475 0.80107 0.76911 0.83859 1.20550 1.21844 1.21381 1.21077 0.95310 0.88739 0.88428 1.22788 0.99606 0.97086 0.97408 1.22443 0.99469 0.97645 0.96557 1.22246 0.98756 0.98220 0.96270 1.22692 0.96088 0.97839 1.00926 0.91163 0.91907 0.92151 0.88255 0.90875 0.91321 0.92361 0.82826 0.82958 0.85218 0.94537 0.93463 0.93851 0.89363 0.93481 0.92922 0.92746 0.93470 0.91920 0.93786 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.25 37.15 0.34 -1.43 16 2 C 0.13 1.79 3.52 -67.93 -0.24 1.55 16 3 C -0.16 -1.99 9.25 37.16 0.34 -1.65 16 4 N -0.46 -8.12 2.61 -106.83 -0.28 -8.40 16 5 C -0.09 -1.51 10.60 -16.56 -0.18 -1.68 16 6 C -0.04 -0.74 11.87 -17.81 -0.21 -0.95 16 7 N -0.48 -11.62 11.25 -10.82 -0.12 -11.74 16 8 C 0.23 5.14 7.44 -155.42 -1.16 3.98 16 9 C 0.21 4.82 5.47 -5.19 -0.03 4.79 16 10 N -0.56 -13.13 2.40 -165.75 -0.40 -13.52 16 11 C -0.25 -6.58 7.60 -15.06 -0.11 -6.69 16 12 H 0.06 1.63 7.28 -52.49 -0.38 1.24 16 13 C 0.03 0.72 4.98 -17.43 -0.09 0.63 16 14 N -0.89 -24.99 11.26 55.49 0.62 -24.37 16 15 Si 0.90 22.76 29.62 -169.99 -5.03 17.72 16 16 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 17 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 C 0.17 3.35 3.42 -66.82 -0.23 3.12 16 20 C -0.13 -2.46 6.42 -25.03 -0.16 -2.62 16 21 C -0.12 -1.93 6.91 -24.70 -0.17 -2.10 16 22 C -0.12 -1.91 6.83 -25.07 -0.17 -2.08 16 23 C -0.14 -2.45 5.83 -25.61 -0.15 -2.60 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.64 7.95 -51.93 -0.41 0.23 16 27 H 0.10 1.46 5.26 -51.93 -0.27 1.19 16 28 H 0.07 1.04 5.71 -51.93 -0.30 0.74 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.67 7.95 -51.93 -0.41 0.26 16 31 H 0.15 2.09 8.06 -52.49 -0.42 1.66 16 32 H 0.15 2.62 8.06 -52.49 -0.42 2.20 16 33 H 0.13 3.50 5.29 -51.92 -0.27 3.23 16 34 H 0.04 0.76 6.75 -51.93 -0.35 0.41 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.04 0.78 6.34 -51.93 -0.33 0.45 16 37 H 0.09 1.98 7.03 -51.93 -0.37 1.62 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.70 6.12 -51.93 -0.32 0.38 16 44 H 0.07 1.51 7.06 -51.92 -0.37 1.14 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -29.88 340.17 -9.43 -39.31 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.15 Total: 3.59 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.21 Total: -7.72 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.17 Total: -58.03 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.72 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.88 -9.43 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172572323.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.360 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds