Wall clock time and date at job start Mon Mar 30 2020 01:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47077 * 2 1 4 4 N 1.46508 * 109.47348 * 119.99980 * 2 1 3 5 5 C 1.36884 * 126.39143 * 299.98107 * 4 2 1 6 6 C 1.34674 * 106.81278 * 179.97438 * 5 4 2 7 7 N 1.34130 * 108.02175 * 0.22462 * 6 5 4 8 8 C 1.30499 * 109.25518 * 359.61985 * 7 6 5 9 9 C 1.50695 * 125.65226 * 180.14538 * 8 7 6 10 10 N 1.46503 * 109.47513 * 270.27733 * 9 8 7 11 11 C 1.36933 * 120.00096 * 84.27614 * 10 9 8 12 12 H 1.08000 * 120.00484 * 212.95104 * 11 10 9 13 13 C 1.38816 * 119.99878 * 32.95346 * 11 10 9 14 14 N 1.31619 * 120.00117 * 24.19894 * 13 11 10 15 15 Si 1.86802 * 120.00091 * 204.19819 * 13 11 10 16 16 H 1.48498 * 109.47206 * 59.99839 * 15 13 11 17 17 H 1.48501 * 109.47173 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47159 * 300.00234 * 15 13 11 19 19 C 1.46498 * 119.99831 * 264.28223 * 10 9 8 20 20 C 1.54264 * 110.03167 * 237.90602 * 19 10 9 21 21 C 1.54960 * 104.16212 * 217.13695 * 20 19 10 22 22 C 1.54896 * 102.77727 * 37.88553 * 21 20 19 23 23 C 1.53872 * 110.03509 * 120.68555 * 19 10 9 24 24 H 1.08995 * 109.47045 * 60.00496 * 1 2 3 25 25 H 1.09004 * 109.46776 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47501 * 299.99749 * 1 2 3 27 27 H 1.09000 * 109.47674 * 239.99736 * 2 1 3 28 28 H 1.09006 * 109.47364 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47277 * 300.00225 * 3 2 1 30 30 H 1.08996 * 109.47156 * 60.00132 * 3 2 1 31 31 H 1.07999 * 126.59523 * 359.97014 * 5 4 2 32 32 H 1.08001 * 125.98569 * 179.97438 * 6 5 4 33 33 H 1.09009 * 109.47135 * 30.27724 * 9 8 7 34 34 H 1.09002 * 109.47581 * 150.27517 * 9 8 7 35 35 H 0.96994 * 119.99955 * 179.97438 * 14 13 11 36 36 H 1.09003 * 110.01714 * 359.29498 * 19 10 9 37 37 H 1.09006 * 110.48720 * 335.78080 * 20 19 10 38 38 H 1.09001 * 110.49154 * 98.42801 * 20 19 10 39 39 H 1.08998 * 110.72081 * 279.57230 * 21 20 19 40 40 H 1.09004 * 110.92935 * 156.29156 * 21 20 19 41 41 H 1.08999 * 110.48455 * 203.41007 * 22 21 20 42 42 H 1.08995 * 110.59847 * 80.81731 * 22 21 20 43 43 H 1.08990 * 110.03608 * 238.56935 * 23 19 10 44 44 H 1.09007 * 110.02952 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7699 -0.3387 2.4955 6 6 2.4051 -1.2381 3.2710 7 7 3.0284 -2.1123 2.4671 8 6 2.7970 -1.7936 1.2230 9 6 3.3174 -2.5308 0.0160 10 7 4.6144 -1.9731 -0.3753 11 6 5.7593 -2.4072 0.2377 12 1 6.5840 -1.7258 0.3864 13 6 5.8602 -3.7231 0.6679 14 7 5.1237 -4.6577 0.1053 15 14 7.0411 -4.1676 2.0454 16 1 6.6755 -3.4159 3.2727 17 1 6.9609 -5.6257 2.3150 18 1 8.4263 -3.8145 1.6430 19 6 4.6864 -0.9509 -1.4222 20 6 5.5992 -1.4323 -2.5689 21 6 6.3438 -0.1517 -3.0238 22 6 6.6008 0.5881 -1.6874 23 6 5.3225 0.3334 -0.8622 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.1784 0.4992 2.8338 32 1 2.4145 -1.2506 4.3509 33 1 3.4342 -3.5872 0.2579 34 1 2.6120 -2.4226 -0.8079 35 1 5.1944 -5.5772 0.4057 36 1 3.6881 -0.7372 -1.8043 37 1 6.3078 -2.1767 -2.2056 38 1 5.0032 -1.8385 -3.3861 39 1 5.7144 0.4471 -3.6820 40 1 7.2848 -0.4019 -3.5139 41 1 6.7356 1.6555 -1.8622 42 1 7.4714 0.1725 -1.1803 43 1 4.6334 1.1705 -0.9732 44 1 5.5772 0.1963 0.1888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172572323.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:04 Heat of formation + Delta-G solvation = 56.553442 kcal Electronic energy + Delta-G solvation = -23428.561099 eV Core-core repulsion = 20381.520944 eV Total energy + Delta-G solvation = -3047.040155 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.78564 -39.32447 -36.78736 -36.08850 -33.09256 -31.44358 -30.93016 -29.39696 -28.35092 -28.03205 -27.37374 -24.30488 -23.56597 -21.57137 -21.30245 -20.78317 -20.19598 -18.33999 -17.68408 -17.12545 -16.44622 -16.17894 -15.94444 -15.44748 -14.98239 -14.91483 -14.69970 -14.42995 -14.15070 -14.04727 -13.77710 -13.18321 -13.09894 -13.02237 -12.87498 -12.69048 -12.40705 -12.33259 -12.21109 -12.04071 -11.88396 -11.80553 -11.71426 -11.65587 -11.32013 -11.13011 -10.51317 -10.41763 -10.28420 -9.03770 -8.57365 -7.78027 -5.30520 1.36257 1.41888 1.47928 1.55116 2.11795 2.45271 2.59567 3.35289 3.68030 3.71778 3.93964 3.98347 4.02363 4.04068 4.14608 4.18353 4.32500 4.55782 4.62151 4.66600 4.68797 4.72277 4.81979 4.84204 4.91165 4.93558 4.96499 4.97313 5.05316 5.17658 5.19323 5.24579 5.28031 5.35899 5.51809 5.60904 5.65226 5.71865 5.73073 5.85585 6.13876 6.47051 6.65702 7.21435 7.60917 7.94121 8.39269 9.18947 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.009390 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.509209 B = 2981.301155 C = 4376.674197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.118 3.882 3 C -0.157 4.157 4 N -0.445 5.445 5 C -0.055 4.055 6 C -0.074 4.074 7 N -0.538 5.538 8 C 0.207 3.793 9 C 0.215 3.785 10 N -0.572 5.572 11 C -0.232 4.232 12 H 0.046 0.954 13 C -0.017 4.017 14 N -0.907 5.907 15 Si 0.934 3.066 16 H -0.298 1.298 17 H -0.294 1.294 18 H -0.277 1.277 19 C 0.166 3.834 20 C -0.130 4.130 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.126 4.126 24 H 0.100 0.900 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.200 0.800 32 H 0.169 0.831 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.248 0.752 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.769 14.483 -4.909 17.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 C -0.214 4.214 4 N -0.129 5.129 5 C -0.189 4.189 6 C -0.222 4.222 7 N -0.257 5.257 8 C -0.059 4.059 9 C 0.086 3.914 10 N -0.291 5.291 11 C -0.363 4.363 12 H 0.063 0.937 13 C -0.215 4.215 14 N -0.551 5.551 15 Si 0.765 3.235 16 H -0.225 1.225 17 H -0.220 1.220 18 H -0.203 1.203 19 C 0.060 3.940 20 C -0.170 4.170 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.165 4.165 24 H 0.119 0.881 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.217 0.783 32 H 0.186 0.814 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.344 13.715 -4.782 16.751 hybrid contribution 0.414 -0.254 1.203 1.298 sum -7.930 13.461 -3.578 16.028 Atomic orbital electron populations 1.22113 0.91638 1.02588 1.04543 1.21687 0.96493 0.94515 0.85676 1.22214 1.01570 0.93310 1.04346 1.45874 1.37886 1.22004 1.07097 1.22795 1.08455 1.04415 0.83249 1.22604 1.03048 0.96426 1.00111 1.70258 1.24099 1.29674 1.01704 1.24942 0.95060 0.89677 0.96209 1.19370 0.85434 0.98998 0.87607 1.43979 1.01048 1.44645 1.39414 1.18657 0.94694 0.91600 1.31326 0.93662 1.25276 0.99759 0.95647 1.00801 1.69952 1.44184 1.00020 1.40989 0.85863 0.79687 0.76207 0.81778 1.22512 1.21991 1.20341 1.21315 0.96752 0.88237 0.87693 1.22710 0.98996 0.97827 0.97433 1.22391 1.00011 0.95794 0.96577 1.22241 0.96890 1.00143 0.96031 1.22550 0.97477 0.97880 0.98578 0.88092 0.93348 0.91055 0.89320 0.93140 0.88075 0.91292 0.78292 0.81395 0.89297 0.92830 0.94246 0.91848 0.93744 0.92686 0.89824 0.91839 0.90306 0.94139 0.90941 0.95044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.25 71.98 0.67 -2.09 16 2 C 0.12 2.91 3.52 44.99 0.16 3.07 16 3 C -0.16 -3.11 9.25 71.98 0.67 -2.45 16 4 N -0.45 -15.14 2.61 -491.91 -1.28 -16.42 16 5 C -0.06 -1.77 10.60 83.09 0.88 -0.88 16 6 C -0.07 -2.93 11.87 83.52 0.99 -1.94 16 7 N -0.54 -26.63 11.25 -188.13 -2.12 -28.75 16 8 C 0.21 9.25 7.44 138.13 1.03 10.28 16 9 C 0.21 10.24 5.47 85.63 0.47 10.71 16 10 N -0.57 -27.31 2.40 -678.31 -1.62 -28.94 16 11 C -0.23 -12.78 7.60 84.04 0.64 -12.15 16 12 H 0.05 2.59 7.28 -2.91 -0.02 2.56 16 13 C -0.02 -1.00 4.98 84.86 0.42 -0.57 16 14 N -0.91 -53.78 11.26 21.65 0.24 -53.53 16 15 Si 0.93 48.75 29.62 68.60 2.03 50.78 16 16 H -0.30 -16.25 7.11 99.48 0.71 -15.55 16 17 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 18 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 19 C 0.17 6.33 3.42 45.71 0.16 6.49 16 20 C -0.13 -4.84 6.42 31.69 0.20 -4.64 16 21 C -0.11 -3.14 6.91 31.91 0.22 -2.92 16 22 C -0.12 -3.51 6.83 31.67 0.22 -3.29 16 23 C -0.13 -4.34 5.83 31.32 0.18 -4.15 16 24 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.07 1.17 7.95 -2.39 -0.02 1.15 16 27 H 0.09 2.38 5.26 -2.39 -0.01 2.36 16 28 H 0.05 1.25 5.71 -2.38 -0.01 1.24 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.24 7.95 -2.39 -0.02 1.22 16 31 H 0.20 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.17 5.74 8.06 -2.91 -0.02 5.72 16 33 H 0.09 5.07 5.29 -2.38 -0.01 5.05 16 34 H 0.05 2.27 6.75 -2.39 -0.02 2.25 16 35 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.06 2.15 6.34 -2.39 -0.02 2.14 16 37 H 0.04 2.04 7.03 -2.38 -0.02 2.02 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 2.07 6.12 -2.39 -0.01 2.06 16 44 H 0.03 1.33 7.06 -2.38 -0.02 1.31 16 Total: -1.00 -70.06 340.17 5.12 -64.94 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.97 Total: 16.45 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 6.90 Total: -4.53 kcal Atomic # 7 Polarization: -122.86 SS G_CDS: -4.78 Total: -127.64 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.03 Total: 50.78 kcal Total: -70.06 5.12 -64.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172572323.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.496 kcal (2) G-P(sol) polarization free energy of solvation -70.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds