Wall clock time and date at job start Mon Mar 30 2020 01:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 5 5 C 1.50698 * 109.47592 * 59.99575 * 4 2 1 6 6 H 1.08003 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00356 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99989 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00117 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47306 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47019 * 120.00329 * 9 7 5 12 12 H 1.48498 * 109.47326 * 240.00104 * 9 7 5 13 13 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 14 14 N 1.46899 * 109.47254 * 300.00134 * 13 2 1 15 15 C 1.46904 * 111.00029 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.46330 * 324.98689 * 15 14 13 17 17 C 1.53104 * 109.46562 * 205.00030 * 15 14 13 18 18 C 1.53362 * 109.50626 * 169.70741 * 17 15 14 19 19 C 1.50830 * 108.37962 * 49.94401 * 18 17 15 20 20 N 1.34318 * 128.03623 * 163.44338 * 19 18 17 21 21 H 0.97001 * 126.09426 * 0.15180 * 20 19 18 22 22 N 1.40295 * 107.82133 * 180.11531 * 20 19 18 23 23 C 1.31071 * 108.26869 * 359.93645 * 22 20 19 24 24 C 1.35752 * 124.11850 * 343.46548 * 19 18 17 25 25 C 1.50841 * 124.11130 * 359.78338 * 24 19 18 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.09002 * 109.47103 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47066 * 299.99881 * 4 2 1 34 34 H 0.96996 * 119.99885 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47153 * 180.02562 * 13 2 1 36 36 H 1.09001 * 109.46832 * 60.00321 * 13 2 1 37 37 H 1.00908 * 110.99847 * 56.04959 * 14 13 2 38 38 H 1.09000 * 109.46548 * 289.72529 * 17 15 14 39 39 H 1.09006 * 109.46359 * 49.70474 * 17 15 14 40 40 H 1.09002 * 109.68235 * 169.65918 * 18 17 15 41 41 H 1.08999 * 109.68621 * 290.21869 * 18 17 15 42 42 H 1.07998 * 125.96446 * 179.97438 * 23 22 20 43 43 H 1.09005 * 109.67977 * 223.74461 * 25 24 19 44 44 H 1.08995 * 109.67785 * 103.19103 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8713 -0.4814 -3.7320 8 7 2.6275 -1.5507 -3.8527 9 14 1.2479 0.3987 -5.2572 10 1 0.4225 1.5651 -4.8530 11 1 2.4027 0.8664 -6.0655 12 1 0.4238 -0.5352 -6.0656 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.0209 -0.6953 3.6703 16 1 2.0597 -1.7719 3.5047 17 6 1.0581 -0.3904 4.8210 18 6 1.3966 -1.2821 6.0219 19 6 2.8774 -1.1779 6.2893 20 7 3.5450 -1.5335 7.3992 21 1 3.1572 -1.9179 8.2009 22 7 4.9035 -1.2508 7.1922 23 6 5.0392 -0.7425 5.9917 24 6 3.7787 -0.6862 5.4012 25 6 3.4219 -0.1820 4.0251 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 -0.7207 -1.2494 33 1 1.6767 -1.7488 -1.2493 34 1 2.8618 -1.8820 -4.7337 35 1 3.1301 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2492 37 1 0.5438 0.0412 2.4402 38 1 1.1546 0.6569 5.1075 39 1 0.0350 -0.5863 4.5001 40 1 0.8410 -0.9457 6.8973 41 1 1.1362 -2.3162 5.7963 42 1 5.9662 -0.4226 5.5394 43 1 4.1443 -0.5548 3.2988 44 1 3.4255 0.9079 4.0211 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174415000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:59 Heat of formation + Delta-G solvation = 46.447871 kcal Electronic energy + Delta-G solvation = -21677.193292 eV Core-core repulsion = 18629.714927 eV Total energy + Delta-G solvation = -3047.478365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.61934 -38.20428 -36.38476 -33.33661 -32.51342 -31.73975 -29.70954 -28.10721 -26.77574 -26.30393 -25.09897 -23.52260 -22.37656 -22.04261 -20.97611 -18.85357 -17.91662 -17.46105 -16.21073 -15.86692 -14.93299 -14.73369 -14.60200 -14.33536 -14.01723 -13.81630 -13.45505 -12.98777 -12.94449 -12.86775 -12.55340 -12.15550 -11.98307 -11.86761 -11.53962 -11.12115 -10.92435 -10.84630 -10.73476 -10.69849 -10.59958 -10.46534 -10.19607 -10.05746 -9.66576 -9.63603 -8.98345 -8.78473 -8.38517 -8.29830 -8.06222 -5.94210 -3.94100 1.70917 2.67658 2.67853 3.33735 3.41696 3.45072 4.25218 4.38560 4.51179 4.63335 4.72006 4.90175 5.06429 5.29639 5.33629 5.41752 5.43824 5.49725 5.54267 5.73223 5.80276 5.85903 5.89811 6.00554 6.04076 6.19757 6.31099 6.33205 6.39904 6.53416 6.58883 6.70033 6.82902 6.86489 7.11043 7.24388 7.27581 7.30253 7.44897 7.51760 7.71020 7.74970 7.89051 8.06549 8.51080 9.11728 9.68706 11.17507 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036904 B = 0.003218 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.545258 B = 8698.827775 C = 9038.506106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.115 4.115 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.071 3.929 14 N -0.682 5.682 15 C 0.087 3.913 16 H 0.042 0.958 17 C -0.114 4.114 18 C -0.054 4.054 19 C 0.082 3.918 20 N -0.474 5.474 21 H 0.435 0.565 22 N -0.303 5.303 23 C 0.058 3.942 24 C -0.228 4.228 25 C -0.029 4.029 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.258 0.742 35 H 0.067 0.933 36 H 0.022 0.978 37 H 0.339 0.661 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.183 0.817 43 H 0.070 0.930 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 1.038 20.913 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.058 4.058 14 N -0.314 5.314 15 C -0.023 4.023 16 H 0.060 0.940 17 C -0.152 4.152 18 C -0.094 4.094 19 C -0.047 4.047 20 N -0.182 5.182 21 H 0.278 0.722 22 N -0.125 5.125 23 C -0.127 4.127 24 C -0.240 4.240 25 C -0.068 4.068 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.158 0.842 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.200 0.800 43 H 0.089 0.911 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.175 1.055 21.828 21.885 hybrid contribution -1.305 -0.515 -1.251 1.880 sum -2.480 0.540 20.577 20.733 Atomic orbital electron populations 1.21767 0.96171 1.00277 1.00384 1.20628 0.94657 0.96164 0.94458 1.21593 0.99783 0.95773 1.00124 1.19125 0.96129 0.94946 0.90227 1.21284 1.30624 1.11833 0.90615 0.92245 1.25020 0.95442 0.95133 0.99054 1.69978 1.37390 1.23262 1.23140 0.86620 0.78612 0.79722 0.83549 1.19774 1.21173 1.21237 1.22151 0.99883 0.94485 0.89259 1.60575 1.16127 1.53823 1.00905 1.21531 0.94554 0.96353 0.89829 0.93957 1.21720 0.99154 1.00353 0.94001 1.20329 0.87969 1.01551 0.99502 1.20965 0.95686 0.99887 0.88208 1.45997 1.05826 1.51673 1.14672 0.72188 1.77473 0.93471 1.22587 1.18987 1.23642 0.98794 0.98388 0.91868 1.20073 0.92147 1.12489 0.99305 1.19976 0.95753 1.00744 0.90354 0.94797 0.91779 0.94184 0.94174 0.92809 0.93845 0.96675 0.96986 0.93250 0.91503 0.95965 0.84170 0.90512 0.90948 0.90161 0.89800 0.79986 0.91105 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 7.89 37.16 0.29 -2.02 16 2 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 3 C -0.12 -2.19 8.06 37.16 0.30 -1.89 16 4 C 0.03 0.83 4.04 -27.89 -0.11 0.72 16 5 C -0.51 -13.73 7.65 -34.44 -0.26 -13.99 16 6 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.07 1.18 4.45 -3.83 -0.02 1.16 16 14 N -0.68 -9.16 5.52 -106.47 -0.59 -9.75 16 15 C 0.09 1.01 2.46 -67.47 -0.17 0.84 16 16 H 0.04 0.53 7.77 -51.93 -0.40 0.13 16 17 C -0.11 -1.01 5.29 -26.49 -0.14 -1.15 16 18 C -0.05 -0.41 6.30 -27.63 -0.17 -0.58 16 19 C 0.08 0.83 7.08 -82.33 -0.58 0.25 16 20 N -0.47 -4.66 7.34 33.48 0.25 -4.41 16 21 H 0.43 2.84 8.96 -182.45 -1.64 1.21 16 22 N -0.30 -3.71 12.71 30.55 0.39 -3.32 16 23 C 0.06 0.68 12.00 -17.48 -0.21 0.47 16 24 C -0.23 -2.65 5.91 -105.05 -0.62 -3.27 16 25 C -0.03 -0.35 5.71 -27.63 -0.16 -0.51 16 26 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 27 H 0.06 1.27 6.62 -51.93 -0.34 0.92 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 1.10 6.62 -51.93 -0.34 0.75 16 31 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16 32 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.07 1.17 7.67 -51.93 -0.40 0.77 16 36 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 37 H 0.34 4.29 6.24 -39.29 -0.25 4.04 16 38 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 39 H 0.07 0.57 7.90 -51.93 -0.41 0.16 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.07 0.90 7.76 -51.93 -0.40 0.49 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -31.12 341.55 -9.71 -40.82 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.57 Total: 0.86 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -2.04 Total: -19.78 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.78 Total: -43.56 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.12 -9.71 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174415000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.271 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds