Wall clock time and date at job start Mon Mar 30 2020 01:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46848 * 240.00166 * 2 1 3 5 5 C 1.50695 * 109.47204 * 60.00011 * 4 2 1 6 6 H 1.08001 * 119.99935 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99986 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99863 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00106 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47257 * 59.99894 * 9 7 5 11 11 H 1.48502 * 109.47222 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47096 * 300.00259 * 9 7 5 13 13 C 1.53004 * 109.47118 * 119.99952 * 2 1 3 14 14 N 1.46901 * 109.47076 * 300.00186 * 13 2 1 15 15 C 1.46897 * 110.99586 * 179.97438 * 14 13 2 16 16 H 1.09003 * 109.46818 * 34.98308 * 15 14 13 17 17 C 1.53124 * 109.45736 * 154.91747 * 15 14 13 18 18 C 1.53362 * 109.50703 * 190.24668 * 17 15 14 19 19 C 1.50824 * 108.41561 * 310.13419 * 18 17 15 20 20 N 1.34321 * 128.03406 * 196.53271 * 19 18 17 21 21 H 0.96996 * 126.09375 * 359.89582 * 20 19 18 22 22 N 1.40296 * 107.81694 * 179.89396 * 20 19 18 23 23 C 1.31069 * 108.27278 * 0.05125 * 22 20 19 24 24 C 1.35756 * 124.12137 * 16.50442 * 19 18 17 25 25 C 1.50833 * 124.11102 * 0.20744 * 24 19 18 26 26 H 1.09002 * 109.46856 * 300.00228 * 1 2 3 27 27 H 1.09004 * 109.47085 * 59.99599 * 1 2 3 28 28 H 1.08997 * 109.47391 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47224 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47238 * 300.00168 * 3 2 1 31 31 H 1.09002 * 109.47456 * 60.00140 * 3 2 1 32 32 H 1.09007 * 109.46575 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.46776 * 299.99950 * 4 2 1 34 34 H 0.96995 * 119.99853 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47049 * 179.97438 * 13 2 1 36 36 H 1.09002 * 109.46884 * 60.00026 * 13 2 1 37 37 H 1.00899 * 110.99618 * 303.94920 * 14 13 2 38 38 H 1.09000 * 109.42908 * 70.25669 * 17 15 14 39 39 H 1.09003 * 109.49784 * 310.28257 * 17 15 14 40 40 H 1.09002 * 109.68257 * 190.38986 * 18 17 15 41 41 H 1.08999 * 109.68084 * 69.87403 * 18 17 15 42 42 H 1.07999 * 125.96660 * 179.97438 * 23 22 20 43 43 H 1.08993 * 109.68759 * 136.27331 * 25 24 19 44 44 H 1.09003 * 109.67893 * 256.79273 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3805 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5509 -3.8526 9 14 1.2490 0.3995 -5.2571 10 1 1.7441 1.7996 -5.2566 11 1 1.7439 -0.3007 -6.4697 12 1 -0.2359 0.3996 -5.2576 13 6 2.0400 -0.7213 1.2493 14 7 1.5503 -0.0288 2.4487 15 6 2.0209 -0.6953 3.6703 16 1 3.0226 -1.0919 3.5049 17 6 2.0565 0.3144 4.8209 18 6 2.7825 -0.3034 6.0222 19 6 2.1891 -1.6641 6.2892 20 7 2.3009 -2.4123 7.3991 21 1 2.7921 -2.1750 8.2011 22 7 1.5805 -3.5982 7.1917 23 6 1.0562 -3.5559 5.9911 24 6 1.4245 -2.3491 5.4009 25 6 1.0687 -1.8440 4.0250 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 3.1300 -0.7216 -1.2490 33 1 1.6766 -1.7488 -1.2492 34 1 2.8621 -1.8818 -4.7336 35 1 3.1300 -0.7216 1.2490 36 1 1.6767 -1.7489 1.2492 37 1 1.8198 0.9435 2.4402 38 1 1.0372 0.5744 5.1068 39 1 2.5840 1.2129 4.5003 40 1 2.6510 0.3327 6.8975 41 1 3.8443 -0.4037 5.7975 42 1 0.4456 -4.3230 5.5383 43 1 1.1782 -2.6491 3.2985 44 1 0.0400 -1.4834 4.0210 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174415011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:01 Heat of formation + Delta-G solvation = 46.507197 kcal Electronic energy + Delta-G solvation = -21676.773527 eV Core-core repulsion = 18629.297734 eV Total energy + Delta-G solvation = -3047.475793 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.61894 -38.20257 -36.38271 -33.33561 -32.51334 -31.73931 -29.71033 -28.10609 -26.77407 -26.30329 -25.09812 -23.52202 -22.37554 -22.04189 -20.97637 -18.85270 -17.91586 -17.46042 -16.20624 -15.86636 -14.93195 -14.73315 -14.60246 -14.33948 -14.01875 -13.81611 -13.45280 -12.98818 -12.94209 -12.87151 -12.55102 -12.15427 -11.97105 -11.86585 -11.54148 -11.11742 -10.89530 -10.85222 -10.76050 -10.70365 -10.59790 -10.45332 -10.18823 -10.08546 -9.66362 -9.63349 -8.97910 -8.80155 -8.38483 -8.29017 -8.06122 -5.93751 -3.93830 1.70908 2.67655 2.67880 3.36227 3.40957 3.43087 4.25271 4.38587 4.51346 4.63258 4.72019 4.90145 5.06506 5.29598 5.33638 5.41960 5.43860 5.49762 5.54305 5.73266 5.80318 5.85947 5.89762 6.00567 6.04109 6.19763 6.31169 6.33226 6.39990 6.53466 6.58916 6.70078 6.82944 6.86496 7.11062 7.24435 7.27608 7.30280 7.44953 7.51789 7.70992 7.74957 7.89201 8.06798 8.51237 9.11535 9.68816 11.17915 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036901 B = 0.003218 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.601138 B = 8698.856645 C = 9038.295579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.059 4.059 3 C -0.128 4.128 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.071 3.929 14 N -0.682 5.682 15 C 0.088 3.912 16 H 0.042 0.958 17 C -0.114 4.114 18 C -0.054 4.054 19 C 0.082 3.918 20 N -0.474 5.474 21 H 0.435 0.565 22 N -0.303 5.303 23 C 0.058 3.942 24 C -0.228 4.228 25 C -0.029 4.029 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.012 0.988 33 H 0.015 0.985 34 H 0.259 0.741 35 H 0.022 0.978 36 H 0.066 0.934 37 H 0.339 0.661 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.183 0.817 43 H 0.070 0.930 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 2.569 20.883 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.058 4.058 14 N -0.314 5.314 15 C -0.022 4.022 16 H 0.060 0.940 17 C -0.152 4.152 18 C -0.094 4.094 19 C -0.047 4.047 20 N -0.182 5.182 21 H 0.278 0.722 22 N -0.125 5.125 23 C -0.127 4.127 24 C -0.240 4.240 25 C -0.068 4.068 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.030 0.970 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.085 0.915 37 H 0.158 0.842 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.200 0.800 43 H 0.089 0.911 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.587 1.425 21.792 21.847 hybrid contribution 0.907 1.082 -1.239 1.879 sum 0.320 2.507 20.553 20.708 Atomic orbital electron populations 1.21592 0.94977 1.00581 1.00114 1.20631 0.95878 0.94940 0.94463 1.21766 0.99620 0.96829 1.00373 1.19114 0.95827 0.95208 0.90191 1.21208 1.30763 1.11914 0.90644 0.92355 1.25014 0.95422 0.95122 0.99027 1.69956 1.37265 1.23201 1.23369 0.86734 0.79217 0.79756 0.82738 1.20388 1.21472 1.20305 1.22150 0.96156 0.98212 0.89256 1.60558 1.63850 1.06131 1.00908 1.21532 0.96650 0.94247 0.89820 0.93961 1.21723 1.01517 0.97991 0.94003 1.20325 0.99847 0.89678 0.99502 1.20964 1.00079 0.95488 0.88211 1.45996 1.42875 1.14642 1.14652 0.72188 1.77471 1.13396 1.02664 1.18985 1.23640 0.99349 0.97829 0.91871 1.20070 1.07972 0.96663 0.99305 1.19973 0.99679 0.96814 0.90358 0.93845 0.92819 0.94172 0.94188 0.91785 0.94804 0.97005 0.96692 0.93129 0.95966 0.91506 0.84159 0.90519 0.90941 0.90165 0.89805 0.79985 0.91105 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.06 37.16 0.30 -1.89 16 2 C -0.06 -1.14 0.60 -154.51 -0.09 -1.24 16 3 C -0.13 -2.32 7.89 37.16 0.29 -2.02 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.79 7.65 -34.44 -0.26 -14.05 16 6 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.07 1.18 4.45 -3.82 -0.02 1.17 16 14 N -0.68 -9.17 5.52 -106.46 -0.59 -9.76 16 15 C 0.09 1.01 2.46 -67.46 -0.17 0.84 16 16 H 0.04 0.53 7.77 -51.93 -0.40 0.13 16 17 C -0.11 -1.01 5.29 -26.48 -0.14 -1.15 16 18 C -0.05 -0.41 6.30 -27.64 -0.17 -0.58 16 19 C 0.08 0.83 7.08 -82.33 -0.58 0.25 16 20 N -0.47 -4.66 7.34 33.48 0.25 -4.41 16 21 H 0.43 2.85 8.96 -182.45 -1.64 1.21 16 22 N -0.30 -3.71 12.71 30.54 0.39 -3.32 16 23 C 0.06 0.68 12.00 -17.48 -0.21 0.47 16 24 C -0.23 -2.65 5.91 -105.05 -0.62 -3.27 16 25 C -0.03 -0.35 5.72 -27.63 -0.16 -0.51 16 26 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16 27 H 0.05 1.10 6.62 -51.93 -0.34 0.75 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.27 6.62 -51.93 -0.34 0.92 16 31 H 0.03 0.51 6.57 -51.93 -0.34 0.16 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 36 H 0.07 1.17 7.68 -51.93 -0.40 0.77 16 37 H 0.34 4.29 6.24 -39.29 -0.25 4.05 16 38 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 39 H 0.07 0.57 7.90 -51.93 -0.41 0.16 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.07 0.90 7.76 -51.93 -0.40 0.49 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 341.56 15.07 5.15 5.15 Total: -1.00 -31.09 341.56 -9.71 -40.79 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.57 Total: 0.93 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -2.04 Total: -19.80 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.78 Total: -43.61 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.09 -9.71 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174415011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.302 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds