Wall clock time and date at job start Mon Mar 30 2020 01:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47231 * 2 1 4 4 C 1.53000 * 109.46982 * 240.00176 * 2 1 3 5 5 C 1.50693 * 109.47383 * 60.00342 * 4 2 1 6 6 H 1.07998 * 120.00141 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00022 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99962 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99854 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47401 * 59.99286 * 9 7 5 11 11 H 1.48500 * 109.47064 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47323 * 299.99509 * 9 7 5 13 13 C 1.53006 * 109.47338 * 120.00003 * 2 1 3 14 14 N 1.46504 * 109.46934 * 300.00096 * 13 2 1 15 15 C 1.40800 * 119.99779 * 179.97438 * 14 13 2 16 16 C 1.40221 * 126.06682 * 359.97438 * 15 14 13 17 17 N 1.30858 * 108.36219 * 180.02562 * 16 15 14 18 18 N 1.40082 * 108.35908 * 359.74254 * 17 16 15 19 19 C 1.46506 * 126.06772 * 180.26967 * 18 17 16 20 20 C 1.52999 * 109.47345 * 305.17701 * 19 18 17 21 21 C 1.52992 * 117.49908 * 243.74837 * 20 19 18 22 22 C 1.53002 * 117.49790 * 175.08872 * 20 19 18 23 23 C 1.35706 * 126.06435 * 180.02562 * 15 14 13 24 24 H 1.09006 * 109.46903 * 300.00050 * 1 2 3 25 25 H 1.08997 * 109.47137 * 59.99702 * 1 2 3 26 26 H 1.08998 * 109.47285 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46998 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46848 * 300.00475 * 3 2 1 29 29 H 1.09006 * 109.46760 * 59.99869 * 3 2 1 30 30 H 1.09004 * 109.46743 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.47010 * 299.99522 * 4 2 1 32 32 H 0.97002 * 119.99958 * 180.02562 * 8 7 5 33 33 H 1.08989 * 109.47033 * 180.02562 * 13 2 1 34 34 H 1.08997 * 109.46685 * 59.99861 * 13 2 1 35 35 H 0.97006 * 119.99750 * 0.02562 * 14 13 2 36 36 H 1.08003 * 125.81746 * 359.97438 * 16 15 14 37 37 H 1.09004 * 109.47075 * 65.18219 * 19 18 17 38 38 H 1.09000 * 109.46429 * 185.17883 * 19 18 17 39 39 H 1.09001 * 115.55012 * 29.42083 * 20 19 18 40 40 H 1.09007 * 117.50205 * 359.97438 * 21 20 19 41 41 H 1.09003 * 117.50064 * 145.02098 * 21 20 19 42 42 H 1.08998 * 117.49858 * 214.98220 * 22 20 19 43 43 H 1.08998 * 117.49551 * 359.97438 * 22 20 19 44 44 H 1.08002 * 126.22316 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8704 -0.4822 -3.7320 8 7 2.6264 -1.5515 -3.8526 9 14 1.2472 0.3981 -5.2571 10 1 1.7421 1.7982 -5.2576 11 1 1.7423 -0.3019 -6.4696 12 1 -0.2378 0.3980 -5.2567 13 6 2.0401 -0.7213 1.2493 14 7 1.5517 -0.0306 2.4455 15 6 1.8915 -0.5120 3.7243 16 6 2.6844 -1.6352 3.9997 17 7 2.7763 -1.7664 5.2985 18 7 2.0510 -0.7294 5.8991 19 6 1.9001 -0.5037 7.3388 20 6 1.3527 -1.7708 7.9991 21 6 -0.0261 -1.6855 8.6567 22 6 1.2317 -1.7768 9.5243 23 6 1.5088 0.0282 4.9089 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7216 -1.2490 31 1 1.6767 -1.7489 -1.2492 32 1 2.8608 -1.8829 -4.7336 33 1 3.1300 -0.7208 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.9937 0.7578 2.3564 36 1 3.1408 -2.2822 3.2652 37 1 2.8698 -0.2583 7.7718 38 1 1.2079 0.3214 7.5065 39 1 1.6208 -2.7082 7.5118 40 1 -0.5431 -0.7266 8.6194 41 1 -0.6650 -2.5670 8.6024 42 1 1.4199 -2.7182 10.0404 43 1 1.5425 -0.8782 10.0573 44 1 0.8901 0.9036 5.0410 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179078847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:44 Heat of formation + Delta-G solvation = 90.988610 kcal Electronic energy + Delta-G solvation = -20988.694703 eV Core-core repulsion = 17943.147769 eV Total energy + Delta-G solvation = -3045.546934 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87913 -37.92138 -37.42929 -34.10092 -32.44844 -31.85991 -29.13892 -27.11262 -26.41743 -26.40616 -25.18150 -22.78150 -22.68425 -21.69650 -20.85031 -19.72073 -17.92364 -17.33142 -16.28624 -15.94749 -15.43711 -14.99062 -14.55845 -14.49336 -14.17657 -13.91820 -13.71730 -13.12559 -12.90454 -12.74498 -12.33408 -12.19196 -11.99368 -11.93481 -11.89191 -11.16868 -10.95815 -10.83434 -10.81251 -10.64540 -10.57288 -10.38129 -10.27224 -10.19944 -9.91066 -9.53017 -9.17131 -9.12702 -8.88270 -8.32832 -6.73700 -5.97379 -3.97983 2.03917 2.54448 3.21941 3.33878 3.38991 3.40604 3.43031 4.03494 4.22538 4.48017 4.49700 4.58349 4.78812 5.03316 5.06633 5.20995 5.26027 5.34866 5.38290 5.50768 5.61498 5.71937 5.73116 5.76033 5.84274 5.90653 5.99509 6.29364 6.30059 6.36988 6.51185 6.61755 6.72042 6.75566 7.12755 7.15631 7.16713 7.20133 7.67352 7.77688 7.81396 7.89219 8.02247 8.32331 8.45407 9.06714 9.64798 11.14131 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.048990 B = 0.002713 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.406034 B =10319.830063 C =10467.796348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.069 4.069 3 C -0.124 4.124 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.146 3.854 14 N -0.739 5.739 15 C 0.080 3.920 16 C 0.010 3.990 17 N -0.278 5.278 18 N -0.374 5.374 19 C 0.178 3.822 20 C -0.167 4.167 21 C -0.179 4.179 22 C -0.173 4.173 23 C -0.050 4.050 24 H 0.030 0.970 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.395 0.605 36 H 0.179 0.821 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.412 2.827 22.991 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.070 4.070 3 C -0.182 4.182 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.076 0.924 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.021 3.979 14 N -0.377 5.377 15 C -0.029 4.029 16 C -0.179 4.179 17 N -0.100 5.100 18 N -0.163 5.163 19 C 0.056 3.944 20 C -0.186 4.186 21 C -0.215 4.215 22 C -0.211 4.211 23 C -0.196 4.196 24 H 0.049 0.951 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.230 0.770 36 H 0.196 0.804 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.135 0.865 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.767 1.928 23.802 24.040 hybrid contribution -0.875 1.159 -1.689 2.227 sum -3.642 3.087 22.113 22.623 Atomic orbital electron populations 1.21720 0.95455 1.00943 1.00030 1.20824 0.95337 0.95774 0.95037 1.21721 1.00330 0.96072 1.00032 1.19091 0.96229 0.95170 0.89685 1.21164 1.31037 1.12000 0.90586 0.92377 1.25010 0.95376 0.95104 0.99048 1.69950 1.37044 1.23065 1.23475 0.86719 0.79144 0.79776 0.82702 1.20358 1.21429 1.20355 1.21373 0.97513 0.95299 0.83675 1.44129 1.59598 1.33586 1.00365 1.17838 1.01779 0.96819 0.86459 1.23579 1.02219 0.98906 0.93187 1.77097 1.16216 1.08947 1.07783 1.47985 1.41121 1.22220 1.04988 1.21047 1.01625 0.96172 0.75513 1.22638 1.00596 1.00292 0.95077 1.23094 0.90832 1.03453 1.04167 1.22975 1.02090 1.03568 0.92439 1.21540 1.08707 1.02245 0.87124 0.95141 0.91832 0.93588 0.93580 0.91830 0.95139 0.96468 0.96472 0.93042 0.93424 0.93433 0.76989 0.80376 0.89951 0.89032 0.86474 0.88627 0.88668 0.88457 0.88537 0.81897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.07 -1.33 0.54 -154.50 -0.08 -1.41 16 3 C -0.12 -2.25 8.05 37.16 0.30 -1.95 16 4 C 0.04 0.87 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -13.62 7.65 -34.44 -0.26 -13.88 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.15 2.48 4.52 -4.04 -0.02 2.46 16 14 N -0.74 -10.99 5.21 -58.79 -0.31 -11.30 16 15 C 0.08 1.17 6.96 -83.90 -0.58 0.58 16 16 C 0.01 0.14 11.34 -17.22 -0.20 -0.05 16 17 N -0.28 -4.11 12.22 30.70 0.38 -3.74 16 18 N -0.37 -4.68 3.71 -60.99 -0.23 -4.90 16 19 C 0.18 1.56 6.80 -4.04 -0.03 1.53 16 20 C -0.17 -1.43 5.92 -90.62 -0.54 -1.97 16 21 C -0.18 -1.26 10.18 -26.70 -0.27 -1.54 16 22 C -0.17 -1.11 10.26 -26.69 -0.27 -1.38 16 23 C -0.05 -0.63 11.52 -16.63 -0.19 -0.82 16 24 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 25 H 0.06 1.24 6.62 -51.93 -0.34 0.90 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 1.24 6.62 -51.93 -0.34 0.90 16 29 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.05 0.84 8.14 -51.94 -0.42 0.41 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.39 5.50 6.29 -40.82 -0.26 5.24 16 36 H 0.18 2.46 7.90 -52.48 -0.41 2.04 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.59 7.81 -51.93 -0.41 0.19 16 39 H 0.12 1.27 7.91 -51.93 -0.41 0.86 16 40 H 0.10 0.59 8.03 -51.93 -0.42 0.17 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 354.93 15.07 5.35 5.35 Total: -1.00 -30.15 354.93 -8.54 -38.69 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.39 Total: 3.47 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -2.06 Total: -18.16 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.58 Total: -45.65 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.15 -8.54 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179078847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.682 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds