Wall clock time and date at job start Mon Mar 30 2020 01:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47231 * 2 1 4 4 C 1.53000 * 109.46982 * 240.00176 * 2 1 3 5 5 C 1.50693 * 109.47383 * 60.00342 * 4 2 1 6 6 H 1.07998 * 120.00141 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00022 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99962 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99854 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47401 * 59.99286 * 9 7 5 11 11 H 1.48500 * 109.47064 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47323 * 299.99509 * 9 7 5 13 13 C 1.53006 * 109.47338 * 120.00003 * 2 1 3 14 14 N 1.46504 * 109.46934 * 300.00096 * 13 2 1 15 15 C 1.40800 * 119.99779 * 179.97438 * 14 13 2 16 16 C 1.40221 * 126.06682 * 359.97438 * 15 14 13 17 17 N 1.30858 * 108.36219 * 180.02562 * 16 15 14 18 18 N 1.40082 * 108.35908 * 359.74254 * 17 16 15 19 19 C 1.46506 * 126.06772 * 180.26967 * 18 17 16 20 20 C 1.52999 * 109.47345 * 305.17701 * 19 18 17 21 21 C 1.52992 * 117.49908 * 243.74837 * 20 19 18 22 22 C 1.53002 * 117.49790 * 175.08872 * 20 19 18 23 23 C 1.35706 * 126.06435 * 180.02562 * 15 14 13 24 24 H 1.09006 * 109.46903 * 300.00050 * 1 2 3 25 25 H 1.08997 * 109.47137 * 59.99702 * 1 2 3 26 26 H 1.08998 * 109.47285 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46998 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46848 * 300.00475 * 3 2 1 29 29 H 1.09006 * 109.46760 * 59.99869 * 3 2 1 30 30 H 1.09004 * 109.46743 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.47010 * 299.99522 * 4 2 1 32 32 H 0.97002 * 119.99958 * 180.02562 * 8 7 5 33 33 H 1.08989 * 109.47033 * 180.02562 * 13 2 1 34 34 H 1.08997 * 109.46685 * 59.99861 * 13 2 1 35 35 H 0.97006 * 119.99750 * 0.02562 * 14 13 2 36 36 H 1.08003 * 125.81746 * 359.97438 * 16 15 14 37 37 H 1.09004 * 109.47075 * 65.18219 * 19 18 17 38 38 H 1.09000 * 109.46429 * 185.17883 * 19 18 17 39 39 H 1.09001 * 115.55012 * 29.42083 * 20 19 18 40 40 H 1.09007 * 117.50205 * 359.97438 * 21 20 19 41 41 H 1.09003 * 117.50064 * 145.02098 * 21 20 19 42 42 H 1.08998 * 117.49858 * 214.98220 * 22 20 19 43 43 H 1.08998 * 117.49551 * 359.97438 * 22 20 19 44 44 H 1.08002 * 126.22316 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8704 -0.4822 -3.7320 8 7 2.6264 -1.5515 -3.8526 9 14 1.2472 0.3981 -5.2571 10 1 1.7421 1.7982 -5.2576 11 1 1.7423 -0.3019 -6.4696 12 1 -0.2378 0.3980 -5.2567 13 6 2.0401 -0.7213 1.2493 14 7 1.5517 -0.0306 2.4455 15 6 1.8915 -0.5120 3.7243 16 6 2.6844 -1.6352 3.9997 17 7 2.7763 -1.7664 5.2985 18 7 2.0510 -0.7294 5.8991 19 6 1.9001 -0.5037 7.3388 20 6 1.3527 -1.7708 7.9991 21 6 -0.0261 -1.6855 8.6567 22 6 1.2317 -1.7768 9.5243 23 6 1.5088 0.0282 4.9089 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7216 -1.2490 31 1 1.6767 -1.7489 -1.2492 32 1 2.8608 -1.8829 -4.7336 33 1 3.1300 -0.7208 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.9937 0.7578 2.3564 36 1 3.1408 -2.2822 3.2652 37 1 2.8698 -0.2583 7.7718 38 1 1.2079 0.3214 7.5065 39 1 1.6208 -2.7082 7.5118 40 1 -0.5431 -0.7266 8.6194 41 1 -0.6650 -2.5670 8.6024 42 1 1.4199 -2.7182 10.0404 43 1 1.5425 -0.8782 10.0573 44 1 0.8901 0.9036 5.0410 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179078847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:44 Heat of formation + Delta-G solvation = 74.522320 kcal Electronic energy + Delta-G solvation = -20989.408735 eV Core-core repulsion = 17943.147769 eV Total energy + Delta-G solvation = -3046.260966 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90619 -39.12015 -38.36533 -35.52301 -34.15833 -33.01986 -30.29525 -28.90278 -27.89668 -27.50566 -26.57101 -24.52895 -23.26894 -22.59604 -21.79451 -20.70316 -19.47913 -18.34742 -18.26981 -16.94006 -16.46070 -16.34884 -15.90569 -15.57168 -15.51220 -15.01492 -14.69847 -14.51081 -14.28131 -14.07893 -13.88672 -13.68640 -13.26350 -12.86816 -12.72645 -12.66153 -12.54184 -12.37765 -12.27520 -12.17523 -11.93426 -11.61561 -11.52674 -11.37640 -11.00639 -10.90434 -10.78840 -10.75876 -10.47808 -10.16695 -8.11696 -7.85794 -6.18685 1.02159 1.43079 1.45026 1.52209 1.67160 2.11154 2.45375 2.83528 2.92191 3.22443 3.54033 3.92216 4.02055 4.07482 4.13630 4.16014 4.20873 4.30819 4.34728 4.47217 4.60986 4.76381 4.78337 4.84726 4.86617 4.86828 4.94046 5.00592 5.06697 5.17936 5.20736 5.23215 5.24975 5.46340 5.53466 5.54303 5.58201 5.62856 5.87654 5.93684 6.25818 6.34419 6.60249 6.81633 6.96219 7.23713 7.48477 9.00455 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.048990 B = 0.002713 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.406034 B =10319.830063 C =10467.796348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.062 4.062 3 C -0.117 4.117 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.068 0.932 7 C -0.005 4.005 8 N -0.937 5.937 9 Si 0.956 3.044 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.268 1.268 13 C 0.162 3.838 14 N -0.733 5.733 15 C 0.052 3.948 16 C -0.011 4.011 17 N -0.304 5.304 18 N -0.368 5.368 19 C 0.171 3.829 20 C -0.186 4.186 21 C -0.176 4.176 22 C -0.158 4.158 23 C -0.028 4.028 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.049 0.951 29 H 0.065 0.935 30 H -0.013 1.013 31 H -0.013 1.013 32 H 0.259 0.741 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.402 0.598 36 H 0.175 0.825 37 H 0.091 0.909 38 H 0.123 0.877 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.048 5.317 25.016 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.063 4.063 3 C -0.175 4.175 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.087 0.913 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.193 1.193 11 H -0.216 1.216 12 H -0.193 1.193 13 C 0.037 3.963 14 N -0.373 5.373 15 C -0.056 4.056 16 C -0.198 4.198 17 N -0.128 5.128 18 N -0.157 5.157 19 C 0.051 3.949 20 C -0.205 4.205 21 C -0.213 4.213 22 C -0.195 4.195 23 C -0.176 4.176 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.006 0.994 31 H 0.005 0.995 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.239 0.761 36 H 0.192 0.808 37 H 0.109 0.891 38 H 0.141 0.859 39 H 0.105 0.895 40 H 0.130 0.870 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.134 0.866 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.409 4.426 25.873 26.617 hybrid contribution -0.360 0.351 -2.162 2.220 sum -4.769 4.777 23.711 24.653 Atomic orbital electron populations 1.21636 0.94203 1.00606 1.01013 1.20635 0.96214 0.96076 0.93339 1.21638 0.99691 0.95120 1.01020 1.18975 0.94279 0.94180 0.92314 1.21572 1.30313 1.11993 0.91294 0.91348 1.25924 0.95756 0.95910 1.02605 1.70104 1.38783 1.24905 1.24073 0.85630 0.78918 0.78769 0.78505 1.19276 1.21605 1.19282 1.20964 0.96731 0.94679 0.83973 1.43771 1.60088 1.33743 0.99692 1.17983 1.03228 0.97529 0.86849 1.23659 1.03036 0.99620 0.93483 1.77066 1.17523 1.10396 1.07804 1.48410 1.39666 1.21105 1.06470 1.21432 1.03020 0.97169 0.73320 1.22483 1.02398 0.98998 0.96646 1.23185 0.90449 1.04093 1.03559 1.23075 1.00947 1.04591 0.90920 1.22096 1.07098 1.02175 0.86252 0.91636 0.93220 0.94629 0.94583 0.93225 0.91621 0.99450 0.99478 0.93202 0.94560 0.94627 0.76094 0.80836 0.89126 0.85862 0.89522 0.87040 0.89183 0.88327 0.86575 0.78322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 2 C -0.06 -2.38 0.54 -52.18 -0.03 -2.41 16 3 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 4 C 0.04 2.04 4.04 29.85 0.12 2.16 16 5 C -0.51 -27.85 7.65 25.60 0.20 -27.65 16 6 H 0.07 3.51 5.68 -2.91 -0.02 3.49 16 7 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 8 N -0.94 -57.10 13.29 21.45 0.28 -56.82 16 9 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 C 0.16 5.57 4.52 86.38 0.39 5.96 16 14 N -0.73 -20.63 5.21 -339.93 -1.77 -22.40 16 15 C 0.05 1.45 6.96 37.59 0.26 1.71 16 16 C -0.01 -0.33 11.34 85.32 0.97 0.64 16 17 N -0.30 -8.97 12.22 -56.78 -0.69 -9.67 16 18 N -0.37 -8.48 3.71 -346.88 -1.29 -9.77 16 19 C 0.17 2.51 6.80 86.38 0.59 3.10 16 20 C -0.19 -2.90 5.92 -10.80 -0.06 -2.96 16 21 C -0.18 -2.07 10.18 30.62 0.31 -1.76 16 22 C -0.16 -1.63 10.26 30.62 0.31 -1.31 16 23 C -0.03 -0.63 11.52 83.47 0.96 0.33 16 24 H 0.06 1.83 6.86 -2.38 -0.02 1.82 16 25 H 0.05 1.87 6.62 -2.39 -0.02 1.85 16 26 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.87 6.62 -2.39 -0.02 1.85 16 29 H 0.06 1.83 6.86 -2.38 -0.02 1.81 16 30 H -0.01 -0.73 8.14 -2.39 -0.02 -0.74 16 31 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.40 9.91 6.29 -92.70 -0.58 9.33 16 36 H 0.17 5.13 7.90 -2.91 -0.02 5.10 16 37 H 0.09 1.20 8.14 -2.38 -0.02 1.19 16 38 H 0.12 1.04 7.81 -2.39 -0.02 1.02 16 39 H 0.09 1.90 7.91 -2.39 -0.02 1.88 16 40 H 0.11 0.96 8.03 -2.38 -0.02 0.94 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.20 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -67.24 354.93 4.59 -62.65 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.39 Total: 19.08 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 5.64 Total: -29.10 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -3.47 Total: -98.65 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -67.24 4.59 -62.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179078847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.173 kcal (2) G-P(sol) polarization free energy of solvation -67.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds