Wall clock time and date at job start Mon Mar 30 2020 01:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47647 * 2 1 4 4 N 1.46497 * 109.47289 * 185.33552 * 3 2 1 5 5 C 1.36934 * 120.00044 * 86.32985 * 4 3 2 6 6 H 1.08003 * 120.00251 * 322.95823 * 5 4 3 7 7 C 1.38819 * 120.00065 * 142.95784 * 5 4 3 8 8 N 1.31618 * 119.99880 * 157.22771 * 7 5 4 9 9 Si 1.86796 * 120.00072 * 337.23102 * 7 5 4 10 10 H 1.48494 * 109.47489 * 95.75248 * 9 7 5 11 11 H 1.48497 * 109.47146 * 215.75432 * 9 7 5 12 12 H 1.48503 * 109.46882 * 335.75091 * 9 7 5 13 13 C 1.46501 * 120.00017 * 266.32628 * 4 3 2 14 14 C 1.50701 * 109.46868 * 90.00230 * 13 4 3 15 15 C 1.38880 * 120.33652 * 90.00354 * 14 13 4 16 16 C 1.38301 * 118.50417 * 179.97438 * 15 14 13 17 17 C 1.39135 * 119.09955 * 0.02562 * 16 15 14 18 18 N 1.38993 * 119.70753 * 179.97438 * 17 16 15 19 19 C 1.46504 * 120.00168 * 4.99989 * 18 17 16 20 20 C 1.46505 * 120.00246 * 184.99722 * 18 17 16 21 21 C 1.52995 * 109.46889 * 90.00064 * 20 18 17 22 22 N 1.32405 * 120.58652 * 0.02562 * 17 16 15 23 23 C 1.31976 * 121.62170 * 359.69422 * 22 17 16 24 24 H 1.09000 * 109.46776 * 62.17056 * 1 2 3 25 25 H 1.08990 * 109.47396 * 182.17365 * 1 2 3 26 26 H 1.09000 * 109.46905 * 302.17728 * 1 2 3 27 27 H 1.09004 * 109.46838 * 240.00164 * 2 1 3 28 28 H 1.08998 * 109.47012 * 120.00341 * 2 1 3 29 29 H 1.09003 * 109.47342 * 305.33533 * 3 2 1 30 30 H 1.09000 * 109.46923 * 65.33288 * 3 2 1 31 31 H 0.97007 * 120.00004 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47505 * 210.00205 * 13 4 3 33 33 H 1.09001 * 109.46873 * 330.00080 * 13 4 3 34 34 H 1.07998 * 120.74632 * 359.97438 * 15 14 13 35 35 H 1.07998 * 120.44941 * 179.97438 * 16 15 14 36 36 H 1.08999 * 109.46854 * 89.99597 * 19 18 17 37 37 H 1.08997 * 109.47214 * 210.00246 * 19 18 17 38 38 H 1.09000 * 109.46729 * 330.00174 * 19 18 17 39 39 H 1.09003 * 109.47214 * 210.00218 * 20 18 17 40 40 H 1.08996 * 109.46977 * 330.00045 * 20 18 17 41 41 H 1.09003 * 109.47318 * 300.00090 * 21 20 18 42 42 H 1.09005 * 109.47339 * 60.00420 * 21 20 18 43 43 H 1.09006 * 109.47008 * 180.02562 * 21 20 18 44 44 H 1.08001 * 119.56740 * 180.28548 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.4994 1.4443 -0.1284 5 6 4.0776 1.4060 -1.3691 6 1 3.6313 0.8146 -2.1549 7 6 5.2375 2.1273 -1.6169 8 7 6.0352 1.7728 -2.6020 9 14 5.6663 3.6011 -0.5523 10 1 6.5996 3.1802 0.5232 11 1 6.3127 4.6444 -1.3884 12 1 4.4272 4.1506 0.0544 13 6 4.3402 1.4873 1.0705 14 6 4.6345 0.0819 1.5282 15 6 5.7531 -0.5906 1.0536 16 6 5.9871 -1.8788 1.4992 17 6 5.0988 -2.4542 2.4023 18 7 5.3215 -3.7483 2.8581 19 6 6.5431 -4.4600 2.4743 20 6 4.3346 -4.4007 3.7222 21 6 3.3195 -5.1530 2.8595 22 7 4.0426 -1.7804 2.8307 23 6 3.7974 -0.5482 2.4267 24 1 -0.3633 0.4798 -0.9088 25 1 -0.3633 -1.0268 0.0390 26 1 -0.3633 0.5473 0.8698 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6009 1.9832 -0.8384 30 1 1.7569 1.9279 0.9339 31 1 6.8459 2.2766 -2.7750 32 1 5.2754 1.9977 0.8404 33 1 3.8178 2.0252 1.8616 34 1 6.4251 -0.1183 0.3524 35 1 6.8472 -2.4309 1.1503 36 1 7.3245 -4.2622 3.2080 37 1 6.3431 -5.5308 2.4362 38 1 6.8707 -4.1164 1.4931 39 1 4.8399 -5.1033 4.3849 40 1 3.8182 -3.6473 4.3172 41 1 2.8142 -4.4504 2.1969 42 1 3.8358 -5.9065 2.2646 43 1 2.5849 -5.6380 3.5025 44 1 2.9284 -0.0275 2.8011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191268030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:27 Heat of formation + Delta-G solvation = 48.280228 kcal Electronic energy + Delta-G solvation = -22366.786809 eV Core-core repulsion = 19319.387900 eV Total energy + Delta-G solvation = -3047.398908 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21986 -38.56985 -37.32640 -34.68203 -33.74184 -33.14436 -32.27384 -30.82034 -28.19032 -27.50955 -26.33438 -24.61977 -23.82202 -23.03373 -21.82468 -21.62101 -18.83598 -18.32898 -17.72363 -17.05552 -16.26407 -16.23822 -15.80280 -15.63309 -15.37720 -15.15927 -14.75679 -14.42892 -14.36044 -14.09812 -13.90602 -13.77388 -13.46909 -13.35241 -13.17176 -12.89631 -12.63779 -12.60100 -12.39312 -12.19784 -11.99672 -11.92601 -11.83417 -11.64532 -11.38768 -10.66255 -10.60643 -10.50738 -10.23424 -8.72316 -8.31931 -8.15704 -5.52186 0.44071 0.62023 1.32890 1.43972 1.54691 2.08882 2.44812 2.94112 3.18615 3.57100 3.65557 4.01717 4.12815 4.15956 4.26375 4.32728 4.35965 4.38006 4.42678 4.48549 4.57039 4.61765 4.66537 4.72805 4.81241 4.84088 4.88897 4.90268 4.98228 5.00854 5.08593 5.17962 5.25402 5.27174 5.35407 5.42914 5.61437 5.67566 5.77178 5.98389 6.17184 6.22113 6.50189 7.03401 7.27515 7.68360 8.10473 9.03551 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.006037 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.863549 B = 4637.277142 C = 5615.802946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.146 3.854 4 N -0.608 5.608 5 C -0.247 4.247 6 H 0.031 0.969 7 C -0.013 4.013 8 N -0.947 5.947 9 Si 0.936 3.064 10 H -0.276 1.276 11 H -0.311 1.311 12 H -0.254 1.254 13 C 0.177 3.823 14 C -0.199 4.199 15 C -0.032 4.032 16 C -0.245 4.245 17 C 0.383 3.617 18 N -0.620 5.620 19 C 0.092 3.908 20 C 0.126 3.874 21 C -0.159 4.159 22 N -0.550 5.550 23 C 0.151 3.849 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.020 0.980 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.261 0.739 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.141 0.859 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.873 -10.655 14.598 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C 0.021 3.979 4 N -0.330 5.330 5 C -0.377 4.377 6 H 0.049 0.951 7 C -0.210 4.210 8 N -0.591 5.591 9 Si 0.765 3.235 10 H -0.203 1.203 11 H -0.240 1.240 12 H -0.178 1.178 13 C 0.052 3.948 14 C -0.206 4.206 15 C -0.058 4.058 16 C -0.269 4.269 17 C 0.148 3.852 18 N -0.336 5.336 19 C -0.050 4.050 20 C 0.003 3.997 21 C -0.218 4.218 22 N -0.267 5.267 23 C -0.006 4.006 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.158 0.842 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.292 -11.175 15.152 19.310 hybrid contribution 1.288 1.091 -1.178 2.059 sum -3.003 -10.084 13.973 17.491 Atomic orbital electron populations 1.21647 0.94226 1.01579 1.02153 1.21974 0.96367 0.98988 0.99996 1.21104 0.82001 0.94679 1.00079 1.44262 1.01693 1.86046 1.00957 1.18484 1.07952 1.22058 0.89175 0.95111 1.25947 0.97200 1.00089 0.97751 1.70021 1.12941 1.40796 1.35299 0.85960 0.78541 0.80926 0.78032 1.20309 1.24008 1.17779 1.20108 0.94788 0.91074 0.88818 1.21388 0.97137 1.01126 1.00936 1.21234 0.95998 0.93960 0.94643 1.21504 1.04307 0.97095 1.04040 1.18439 0.89949 0.86774 0.90007 1.46504 1.22820 1.10522 1.53722 1.21826 0.85209 0.97396 1.00603 1.21388 0.89825 0.96473 0.92002 1.22091 0.99483 0.99711 1.00490 1.67159 1.20444 1.09466 1.29633 1.22322 0.97029 0.89081 0.92214 0.93041 0.92838 0.91135 0.96110 0.92730 0.93920 0.91243 0.92971 0.94459 0.90286 0.87750 0.84184 0.92136 0.89059 0.91792 0.88744 0.91112 0.95370 0.92495 0.90116 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.13 -4.75 6.24 30.59 0.19 -4.56 16 3 C 0.15 5.58 5.71 86.38 0.49 6.07 16 4 N -0.61 -28.13 2.07 -706.35 -1.47 -29.59 16 5 C -0.25 -13.93 9.92 84.04 0.83 -13.09 16 6 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 7 C -0.01 -0.78 5.30 84.86 0.45 -0.33 16 8 N -0.95 -58.74 13.97 21.65 0.30 -58.44 16 9 Si 0.94 45.62 25.04 68.60 1.72 47.34 16 10 H -0.28 -12.88 6.68 99.48 0.66 -12.21 16 11 H -0.31 -15.49 7.11 99.48 0.71 -14.78 16 12 H -0.25 -11.65 7.11 99.48 0.71 -10.95 16 13 C 0.18 7.42 4.70 85.63 0.40 7.82 16 14 C -0.20 -7.89 5.48 -19.76 -0.11 -8.00 16 15 C -0.03 -1.31 9.85 22.44 0.22 -1.09 16 16 C -0.25 -8.69 9.27 22.50 0.21 -8.48 16 17 C 0.38 12.67 7.37 133.06 0.98 13.65 16 18 N -0.62 -15.77 2.99 -728.84 -2.18 -17.95 16 19 C 0.09 1.71 10.28 127.77 1.31 3.02 16 20 C 0.13 2.62 6.19 86.38 0.53 3.15 16 21 C -0.16 -3.21 10.24 71.98 0.74 -2.47 16 22 N -0.55 -18.84 9.08 -193.26 -1.75 -20.60 16 23 C 0.15 5.22 9.02 84.62 0.76 5.99 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 1.93 5.97 -2.39 -0.01 1.92 16 29 H 0.04 1.70 8.07 -2.39 -0.02 1.68 16 30 H 0.07 2.21 7.85 -2.39 -0.02 2.20 16 31 H 0.26 15.42 8.31 -92.70 -0.77 14.64 16 32 H 0.04 1.72 3.19 -2.39 -0.01 1.72 16 33 H 0.08 2.78 7.82 -2.39 -0.02 2.76 16 34 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 35 H 0.14 4.31 6.03 -2.91 -0.02 4.29 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.23 8.07 -2.39 -0.02 1.21 16 38 H 0.06 1.28 5.98 -2.39 -0.01 1.27 16 39 H 0.09 1.40 8.07 -2.39 -0.02 1.38 16 40 H 0.07 1.69 7.30 -2.39 -0.02 1.68 16 41 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.17 4.87 7.88 -2.91 -0.02 4.84 16 Total: -1.00 -68.36 349.31 5.27 -63.09 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.92 Total: 17.50 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 7.73 Total: -1.35 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -5.10 Total: -126.58 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.72 Total: 47.34 kcal Total: -68.36 5.27 -63.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191268030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.369 kcal (2) G-P(sol) polarization free energy of solvation -68.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds