Wall clock time and date at job start Mon Mar 30 2020 01:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31858 * 1 3 3 N 1.39529 * 119.99787 * 2 1 4 4 C 1.35817 * 126.10136 * 180.27619 * 3 2 1 5 5 C 1.35331 * 107.61759 * 179.97438 * 4 3 2 6 6 C 1.50700 * 126.01628 * 179.97438 * 5 4 3 7 7 N 1.46904 * 109.47000 * 90.00302 * 6 5 4 8 8 C 1.46901 * 110.99743 * 190.00136 * 7 6 5 9 9 C 1.50703 * 109.47032 * 170.46209 * 8 7 6 10 10 H 1.08002 * 119.99757 * 356.64453 * 9 8 7 11 11 C 1.37869 * 120.00085 * 176.64826 * 9 8 7 12 12 N 1.31510 * 120.00207 * 0.02562 * 11 9 8 13 13 Si 1.86809 * 120.00093 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46991 * 59.99825 * 13 11 9 15 15 H 1.48499 * 109.47097 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.46788 * 299.99986 * 13 11 9 17 17 C 1.46894 * 110.99960 * 66.04422 * 7 6 5 18 18 C 1.52997 * 109.47179 * 61.37479 * 17 7 6 19 19 C 1.53004 * 109.47295 * 174.61695 * 18 17 7 20 20 C 1.52996 * 109.47187 * 64.99813 * 19 18 17 21 21 C 1.53001 * 109.46966 * 184.99991 * 19 18 17 22 22 C 1.39912 * 107.96719 * 0.02562 * 5 4 3 23 23 N 1.30863 * 108.36706 * 359.71958 * 22 5 4 24 24 H 1.07999 * 120.00148 * 179.72863 * 1 2 3 25 25 H 1.08000 * 120.00261 * 359.71886 * 1 2 3 26 26 H 1.07997 * 120.00302 * 180.27522 * 2 1 3 27 27 H 1.08000 * 126.19451 * 0.02562 * 4 3 2 28 28 H 1.09002 * 109.47215 * 210.00014 * 6 5 4 29 29 H 1.09000 * 109.46987 * 330.00483 * 6 5 4 30 30 H 1.08997 * 109.47011 * 290.45611 * 8 7 6 31 31 H 1.08999 * 109.47417 * 50.46178 * 8 7 6 32 32 H 0.97003 * 120.00677 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.46774 * 181.36970 * 17 7 6 34 34 H 1.08992 * 109.47502 * 301.36865 * 17 7 6 35 35 H 1.09002 * 109.47333 * 294.62066 * 18 17 7 36 36 H 1.09006 * 109.47506 * 54.61693 * 18 17 7 37 37 H 1.08995 * 109.46952 * 304.99680 * 19 18 17 38 38 H 1.09003 * 109.47335 * 300.00805 * 20 19 18 39 39 H 1.09006 * 109.47070 * 59.99636 * 20 19 18 40 40 H 1.08993 * 109.47549 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.47292 * 59.99704 * 21 19 18 42 42 H 1.09001 * 109.46998 * 180.02562 * 21 19 18 43 43 H 1.09004 * 109.47208 * 299.99741 * 21 19 18 44 44 H 1.08001 * 125.81697 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3186 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 6 3.3666 1.3528 -0.0053 5 6 3.6368 2.6789 -0.0038 6 6 5.0080 3.3039 -0.0077 7 7 5.4485 3.5096 -1.3940 8 6 6.8654 3.8938 -1.4446 9 6 7.3422 3.8678 -2.8740 10 1 6.6766 3.5413 -3.6593 11 6 8.6280 4.2608 -3.1791 12 7 9.4387 4.6579 -2.2227 13 14 9.2192 4.2279 -4.9508 14 1 8.3659 5.1220 -5.7741 15 1 10.6280 4.6936 -5.0113 16 1 9.1338 2.8413 -5.4754 17 6 4.6081 4.5063 -2.0708 18 6 4.7236 5.8482 -1.3450 19 6 3.9566 6.9178 -2.1252 20 6 2.4641 6.5815 -2.1191 21 6 4.1746 8.2825 -1.4687 22 6 2.4188 3.3674 0.0032 23 7 1.4486 2.4892 -0.0003 24 1 -0.5400 -0.9353 -0.0044 25 1 -0.5400 0.9353 0.0046 26 1 1.8586 -0.9352 -0.0045 27 1 4.0935 0.5540 -0.0106 28 1 4.9715 4.2634 0.5081 29 1 5.7097 2.6437 0.5023 30 1 6.9839 4.8991 -1.0404 31 1 7.4535 3.1925 -0.8526 32 1 10.3432 4.9347 -2.4373 33 1 4.9407 4.6215 -3.1025 34 1 3.5699 4.1748 -2.0587 35 1 4.3028 5.7571 -0.3436 36 1 5.7733 6.1335 -1.2734 37 1 4.3183 6.9471 -3.1530 38 1 2.3088 5.6091 -2.5867 39 1 2.1024 6.5521 -1.0912 40 1 1.9177 7.3431 -2.6753 41 1 5.2379 8.5221 -1.4730 42 1 3.6278 9.0444 -2.0243 43 1 3.8129 8.2532 -0.4409 44 1 2.2997 4.4408 0.0063 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193881313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:16 Heat of formation + Delta-G solvation = 91.641635 kcal Electronic energy + Delta-G solvation = -21998.142060 eV Core-core repulsion = 18952.623444 eV Total energy + Delta-G solvation = -3045.518616 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20373 -37.80769 -35.25648 -34.58891 -32.55027 -30.67359 -30.02062 -28.35049 -26.87778 -26.69580 -24.40268 -23.30513 -22.79071 -20.62945 -19.94057 -19.64281 -18.64615 -17.21991 -16.16839 -15.38508 -14.94452 -14.83816 -14.46682 -14.33249 -14.15886 -13.89289 -13.38762 -13.12646 -12.74644 -12.45190 -12.40975 -12.21194 -11.99757 -11.97698 -11.56141 -11.18657 -11.07774 -10.88432 -10.74441 -10.60970 -10.60559 -10.34720 -10.28426 -10.22092 -9.87189 -9.59722 -9.18916 -8.92599 -8.39651 -7.99999 -7.05322 -5.99172 -3.99584 1.31672 2.61981 2.78077 2.97125 3.35043 3.39156 3.42395 4.46080 4.54318 4.93892 5.05358 5.15041 5.24626 5.32600 5.36625 5.40854 5.52144 5.58783 5.71801 5.82331 5.84734 5.90268 6.01832 6.05732 6.09445 6.16140 6.21369 6.23671 6.29863 6.35491 6.45254 6.50122 6.62954 6.66846 6.82661 6.85401 7.03240 7.34775 7.37602 7.49472 7.80048 7.85500 8.15492 8.28641 8.62185 9.08329 9.64338 11.11336 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.005153 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.276985 B = 5432.652511 C = 6695.889393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.082 3.918 3 N -0.339 5.339 4 C 0.061 3.939 5 C -0.197 4.197 6 C 0.122 3.878 7 N -0.531 5.531 8 C 0.189 3.811 9 C -0.502 4.502 10 H 0.061 0.939 11 C 0.057 3.943 12 N -0.899 5.899 13 Si 0.894 3.106 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.277 1.277 17 C 0.068 3.932 18 C -0.151 4.151 19 C -0.093 4.093 20 C -0.145 4.145 21 C -0.145 4.145 22 C 0.064 3.936 23 N -0.301 5.301 24 H 0.119 0.881 25 H 0.112 0.888 26 H 0.155 0.845 27 H 0.177 0.823 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.002 0.998 31 H 0.024 0.976 32 H 0.261 0.739 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.182 -2.842 5.118 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.028 4.028 3 N -0.117 5.117 4 C -0.081 4.081 5 C -0.207 4.207 6 C -0.007 4.007 7 N -0.254 5.254 8 C 0.064 3.936 9 C -0.541 4.541 10 H 0.079 0.921 11 C -0.144 4.144 12 N -0.539 5.539 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.060 4.060 18 C -0.190 4.190 19 C -0.112 4.112 20 C -0.202 4.202 21 C -0.202 4.202 22 C -0.123 4.123 23 N -0.120 5.120 24 H 0.137 0.863 25 H 0.130 0.870 26 H 0.172 0.828 27 H 0.194 0.806 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.019 0.981 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -15.293 -3.514 4.901 16.439 hybrid contribution 1.464 0.868 -0.568 1.794 sum -13.829 -2.645 4.333 14.731 Atomic orbital electron populations 1.23918 0.94536 1.03504 1.03763 1.21200 0.93846 0.85352 1.02394 1.46053 1.04502 1.04647 1.56483 1.22577 0.84691 0.98854 1.01928 1.20253 0.96431 0.92118 1.11916 1.20364 0.90200 0.98077 0.92108 1.62376 1.05685 1.45274 1.12054 1.19776 0.81485 0.94745 0.97579 1.21101 0.97161 1.42873 0.92941 0.92112 1.24942 0.96790 0.95569 0.97140 1.69939 1.07015 1.45079 1.31902 0.86632 0.77564 0.78425 0.85211 1.20334 1.21445 1.20281 1.22037 0.96335 0.88469 0.99183 1.22278 1.01350 0.96691 0.98673 1.21041 0.95190 0.94764 1.00174 1.21883 0.96011 1.01276 1.01070 1.21831 1.01526 0.96735 1.00115 1.23928 0.90324 0.99554 0.98503 1.77305 1.22501 0.87164 1.25073 0.86276 0.86985 0.82813 0.80588 0.94481 0.91001 0.98052 0.95746 0.92984 0.90535 0.92738 0.93086 0.90557 0.91230 0.92428 0.93267 0.93479 0.92672 0.93442 0.93235 0.80277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.12 14.35 28.83 0.41 -1.71 16 2 C 0.08 0.89 10.78 -15.94 -0.17 0.71 16 3 N -0.34 -4.77 3.80 -12.74 -0.05 -4.82 16 4 C 0.06 0.87 11.38 -16.82 -0.19 0.67 16 5 C -0.20 -3.07 4.95 -105.03 -0.52 -3.59 16 6 C 0.12 2.11 5.23 -4.97 -0.03 2.08 16 7 N -0.53 -10.94 4.70 -237.52 -1.12 -12.05 16 8 C 0.19 4.71 4.52 -4.97 -0.02 4.68 16 9 C -0.50 -13.73 8.40 -34.44 -0.29 -14.02 16 10 H 0.06 1.67 7.21 -52.49 -0.38 1.29 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 13 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 C 0.07 1.29 4.52 -3.83 -0.02 1.27 16 18 C -0.15 -2.58 4.00 -26.73 -0.11 -2.68 16 19 C -0.09 -1.37 2.92 -90.62 -0.26 -1.63 16 20 C -0.15 -1.86 8.95 37.16 0.33 -1.53 16 21 C -0.14 -1.93 9.19 37.16 0.34 -1.59 16 22 C 0.06 0.96 10.58 -17.34 -0.18 0.78 16 23 N -0.30 -4.68 11.73 30.64 0.36 -4.32 16 24 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 25 H 0.11 1.30 7.54 -52.49 -0.40 0.90 16 26 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 27 H 0.18 2.07 8.06 -52.49 -0.42 1.64 16 28 H 0.04 0.63 6.16 -51.93 -0.32 0.31 16 29 H 0.07 1.23 7.94 -51.93 -0.41 0.82 16 30 H 0.00 0.05 6.00 -51.93 -0.31 -0.26 16 31 H 0.02 0.65 7.94 -51.93 -0.41 0.24 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.08 1.63 6.83 -51.93 -0.35 1.27 16 34 H 0.05 0.96 4.93 -51.93 -0.26 0.70 16 35 H 0.05 0.81 6.59 -51.93 -0.34 0.47 16 36 H 0.08 1.55 6.09 -51.93 -0.32 1.24 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.77 6.69 -51.93 -0.35 0.43 16 39 H 0.05 0.58 8.10 -51.93 -0.42 0.16 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.18 2.38 8.01 -52.49 -0.42 1.96 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -30.39 352.81 -7.78 -38.17 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.20 Total: 1.79 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -0.80 Total: -15.07 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.07 Total: -46.69 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.39 -7.78 -38.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193881313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.814 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds