Wall clock time and date at job start Mon Mar 30 2020 01:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46915 * 2 1 4 4 C 1.52998 * 109.46758 * 303.28707 * 3 2 1 5 5 C 1.52994 * 109.47336 * 295.45343 * 4 3 2 6 6 C 1.52999 * 109.47058 * 63.29021 * 3 2 1 7 7 N 1.46494 * 109.47354 * 70.08378 * 6 3 2 8 8 C 1.46505 * 119.99838 * 262.60246 * 7 6 3 9 9 C 1.50701 * 109.46823 * 99.63123 * 8 7 6 10 10 H 1.07994 * 120.00597 * 3.46137 * 9 8 7 11 11 C 1.37882 * 119.99513 * 183.46634 * 9 8 7 12 12 N 1.31515 * 120.00181 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99752 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47385 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47122 * 120.00188 * 13 11 9 16 16 H 1.48494 * 109.47531 * 240.00091 * 13 11 9 17 17 C 1.38410 * 120.00060 * 82.60286 * 7 6 3 18 18 N 1.32502 * 119.21452 * 0.02562 * 17 7 6 19 19 C 1.32263 * 120.73733 * 180.02562 * 18 17 7 20 20 C 1.38623 * 119.19862 * 0.02562 * 19 18 17 21 21 C 1.38590 * 118.55470 * 359.97438 * 20 19 18 22 22 C 1.50707 * 120.39872 * 179.97438 * 21 20 19 23 23 N 1.32286 * 119.20101 * 359.73624 * 21 20 19 24 24 H 1.08993 * 109.46996 * 185.01944 * 1 2 3 25 25 H 1.09002 * 109.47554 * 305.02478 * 1 2 3 26 26 H 1.09001 * 109.47268 * 65.02524 * 1 2 3 27 27 H 1.08998 * 109.47474 * 239.99929 * 2 1 3 28 28 H 1.09003 * 109.47230 * 119.99770 * 2 1 3 29 29 H 1.08997 * 109.46661 * 183.28872 * 3 2 1 30 30 H 1.08996 * 109.47596 * 55.46148 * 4 3 2 31 31 H 1.09006 * 109.46448 * 175.45786 * 4 3 2 32 32 H 1.09008 * 109.47488 * 185.22456 * 5 4 3 33 33 H 1.08996 * 109.47333 * 305.22391 * 5 4 3 34 34 H 1.08997 * 109.47203 * 65.22718 * 5 4 3 35 35 H 1.09003 * 109.46605 * 190.08642 * 6 3 2 36 36 H 1.09005 * 109.46841 * 310.08175 * 6 3 2 37 37 H 1.09002 * 109.46669 * 219.62418 * 8 7 6 38 38 H 1.08992 * 109.47300 * 339.62842 * 8 7 6 39 39 H 0.97001 * 119.99680 * 179.97438 * 12 11 9 40 40 H 1.07997 * 120.40515 * 179.97438 * 19 18 17 41 41 H 1.08003 * 120.72254 * 179.97438 * 20 19 18 42 42 H 1.08996 * 109.46737 * 90.00280 * 22 21 20 43 43 H 1.08994 * 109.46920 * 210.00567 * 22 21 20 44 44 H 1.09002 * 109.46950 * 330.00283 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4635 2.1872 -1.2058 5 6 1.9961 1.5593 -2.4953 6 6 1.5986 2.1395 1.2886 7 7 2.3371 1.5806 2.4236 8 6 1.7275 0.5373 3.2519 9 6 2.2576 -0.8099 2.8335 10 1 3.0178 -0.8776 2.0694 11 6 1.7719 -1.9562 3.4262 12 7 0.8464 -1.8738 4.3570 13 14 2.4284 -3.6262 2.9071 14 1 3.4564 -3.4474 1.8504 15 1 3.0371 -4.3050 4.0793 16 1 1.3142 -4.4539 2.3793 17 6 3.6108 2.0383 2.7135 18 7 4.1470 2.9827 1.9544 19 6 5.3621 3.4418 2.2038 20 6 6.0749 2.9223 3.2733 21 6 5.4841 1.9356 4.0465 22 6 6.2217 1.3413 5.2187 23 7 4.2629 1.5250 3.7462 24 1 -0.3633 -1.0237 0.0899 25 1 -0.3634 0.5898 0.8416 26 1 -0.3634 0.4339 -0.9316 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.1283 1.4431 -0.0590 30 1 0.3759 2.1175 -1.1900 31 1 1.7611 3.2349 -1.1620 32 1 1.6604 2.1457 -3.3507 33 1 3.0856 1.5453 -2.4696 34 1 1.6215 0.5396 -2.5846 35 1 1.8032 3.2075 1.2123 36 1 0.5302 1.9839 1.4381 37 1 1.9729 0.7150 4.2990 38 1 0.6453 0.5577 3.1238 39 1 0.5045 -2.6803 4.7736 40 1 5.7941 4.2114 1.5814 41 1 7.0691 3.2788 3.4989 42 1 6.0018 1.9185 6.1167 43 1 5.9030 0.3091 5.3630 44 1 7.2939 1.3667 5.0239 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269933381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:20 Heat of formation + Delta-G solvation = 42.230338 kcal Electronic energy + Delta-G solvation = -22826.460310 eV Core-core repulsion = 19778.799059 eV Total energy + Delta-G solvation = -3047.661251 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.26465 -37.82231 -35.03828 -33.65904 -32.61445 -31.09952 -30.40193 -28.63748 -27.80029 -26.36105 -23.99861 -23.39324 -22.90378 -22.02647 -20.44449 -18.45676 -16.95847 -16.62745 -16.23187 -15.07059 -14.95632 -14.62923 -14.59234 -14.24612 -13.82475 -13.56848 -13.00697 -12.75257 -12.62322 -12.42021 -12.35636 -12.10005 -11.88217 -11.55651 -11.38904 -11.21193 -11.16342 -10.87429 -10.74892 -10.60078 -10.23092 -10.18611 -10.06772 -9.85383 -9.76739 -9.71238 -9.19429 -9.03823 -8.42874 -8.25881 -6.95028 -6.02960 -4.04378 1.84467 1.91474 3.28131 3.36469 3.40240 3.66660 4.42287 4.61824 4.79767 5.01597 5.21163 5.29061 5.34736 5.44044 5.48352 5.66626 5.72652 5.77466 5.85516 5.87328 5.91192 5.98584 6.10655 6.16284 6.18180 6.27089 6.30294 6.34364 6.37129 6.37464 6.51124 6.63011 6.78729 6.88723 6.94128 7.10976 7.14324 7.44327 7.58488 7.70338 7.83937 7.97793 8.24484 8.43795 8.91467 9.18103 9.55683 11.02696 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.010431 B = 0.009390 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.608003 B = 2981.191138 C = 4948.161196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.159 4.159 3 C -0.092 4.092 4 C -0.118 4.118 5 C -0.147 4.147 6 C 0.139 3.861 7 N -0.561 5.561 8 C 0.260 3.740 9 C -0.505 4.505 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.892 5.892 13 Si 0.888 3.112 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.574 3.426 18 N -0.586 5.586 19 C 0.184 3.816 20 C -0.322 4.322 21 C 0.212 3.788 22 C -0.103 4.103 23 N -0.541 5.541 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.128 0.872 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.153 0.847 41 H 0.128 0.872 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.397 8.542 -5.604 11.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C -0.111 4.111 4 C -0.156 4.156 5 C -0.204 4.204 6 C 0.015 3.985 7 N -0.272 5.272 8 C 0.140 3.860 9 C -0.544 4.544 10 H 0.080 0.920 11 C -0.138 4.138 12 N -0.531 5.531 13 Si 0.716 3.284 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.219 3.781 18 N -0.310 5.310 19 C 0.015 3.985 20 C -0.349 4.349 21 C 0.061 3.939 22 C -0.161 4.161 23 N -0.263 5.263 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.145 0.855 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.170 0.830 41 H 0.146 0.854 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.053 7.991 -5.724 10.632 hybrid contribution 1.258 -0.715 -0.176 1.458 sum 5.312 7.276 -5.900 10.768 Atomic orbital electron populations 1.21713 0.96962 1.01024 0.99952 1.22277 0.95721 0.96371 1.05135 1.21463 1.00227 0.95942 0.93508 1.21553 1.00529 0.98953 0.94555 1.21744 1.00838 1.00816 0.97039 1.21456 0.95351 0.96727 0.84926 1.46889 1.10418 1.39553 1.30300 1.19335 0.92659 0.83649 0.90334 1.21299 1.21780 0.90587 1.20699 0.92005 1.24859 0.95071 0.98854 0.95008 1.69929 1.28468 1.28732 1.25975 0.86595 0.78871 0.84395 0.78545 1.19835 1.20982 1.21025 1.19365 0.87547 0.85686 0.85484 1.67948 1.13954 1.16593 1.32493 1.22657 0.88723 0.94419 0.92688 1.22088 1.03802 1.06067 1.02963 1.21373 0.89454 0.89518 0.93554 1.20709 0.98438 1.02332 0.94583 1.67982 1.08943 1.30126 1.19289 0.93523 0.92742 0.94390 0.94088 0.85478 0.91617 0.91935 0.92647 0.93626 0.93189 0.92653 0.91655 0.90644 0.94376 0.94548 0.92865 0.83023 0.85391 0.90441 0.89986 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.17 37.16 0.34 -2.09 16 2 C -0.16 -3.00 5.23 -26.73 -0.14 -3.14 16 3 C -0.09 -1.60 2.30 -90.62 -0.21 -1.81 16 4 C -0.12 -1.68 5.09 -26.74 -0.14 -1.82 16 5 C -0.15 -1.94 9.52 37.15 0.35 -1.58 16 6 C 0.14 2.58 4.69 -4.05 -0.02 2.56 16 7 N -0.56 -12.24 2.44 -177.41 -0.43 -12.68 16 8 C 0.26 6.48 4.90 -5.19 -0.03 6.46 16 9 C -0.50 -13.36 6.71 -34.44 -0.23 -13.59 16 10 H 0.06 1.71 6.66 -52.49 -0.35 1.36 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 13 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.57 12.47 7.98 -322.80 -2.58 9.89 16 18 N -0.59 -11.22 9.17 -13.93 -0.13 -11.35 16 19 C 0.18 2.90 11.30 -17.22 -0.19 2.70 16 20 C -0.32 -4.90 9.85 -39.31 -0.39 -5.29 16 21 C 0.21 3.79 6.82 -82.26 -0.56 3.23 16 22 C -0.10 -1.44 10.22 36.01 0.37 -1.08 16 23 N -0.54 -11.91 9.19 -10.15 -0.09 -12.01 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.98 6.10 -51.93 -0.32 0.66 16 26 H 0.04 0.57 6.56 -51.93 -0.34 0.22 16 27 H 0.04 0.74 6.84 -51.93 -0.35 0.38 16 28 H 0.13 2.90 3.10 -51.93 -0.16 2.74 16 29 H 0.07 1.29 8.00 -51.93 -0.42 0.87 16 30 H 0.06 0.86 6.23 -51.93 -0.32 0.53 16 31 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 32 H 0.04 0.52 8.14 -51.92 -0.42 0.09 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.75 6.89 -51.93 -0.36 0.39 16 35 H 0.07 1.16 7.54 -51.93 -0.39 0.77 16 36 H 0.08 1.36 5.59 -51.93 -0.29 1.07 16 37 H 0.04 1.06 7.66 -51.93 -0.40 0.66 16 38 H 0.04 0.94 7.73 -51.93 -0.40 0.54 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -29.41 344.46 -10.30 -39.71 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.04 Total: 3.26 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -3.52 Total: -3.91 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.08 Total: -60.58 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.41 -10.30 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269933381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.939 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds