Wall clock time and date at job start Mon Mar 30 2020 02:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46822 * 2 1 4 4 C 1.34952 * 126.03417 * 124.99619 * 3 2 1 5 5 C 1.35317 * 107.73985 * 180.02562 * 4 3 2 6 6 C 1.50705 * 126.03431 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47150 * 90.00524 * 6 5 4 8 8 N 1.46896 * 109.47520 * 174.98619 * 7 6 5 9 9 C 1.46905 * 110.99589 * 74.74284 * 8 7 6 10 10 C 1.50704 * 109.46732 * 189.99993 * 9 8 7 11 11 H 1.07995 * 120.00303 * 0.27712 * 10 9 8 12 12 C 1.37881 * 119.99522 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00102 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99579 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47259 * 89.99769 * 14 12 10 16 16 H 1.48493 * 109.46943 * 209.99518 * 14 12 10 17 17 H 1.48503 * 109.47455 * 329.99681 * 14 12 10 18 18 C 1.46905 * 111.00073 * 198.69517 * 8 7 6 19 19 C 1.53000 * 109.46736 * 72.12347 * 18 8 7 20 20 C 1.53002 * 117.49485 * 243.83241 * 19 18 8 21 21 C 1.53003 * 117.49601 * 175.21206 * 19 18 8 22 22 C 1.39866 * 107.92373 * 0.26750 * 5 4 3 23 23 N 1.30838 * 108.20199 * 359.55086 * 22 5 4 24 24 H 1.09000 * 109.46956 * 60.00348 * 1 2 3 25 25 H 1.09008 * 109.46543 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47363 * 300.00003 * 1 2 3 27 27 H 1.08997 * 109.47363 * 239.99997 * 2 1 3 28 28 H 1.09000 * 109.46956 * 119.99651 * 2 1 3 29 29 H 1.07994 * 126.13190 * 0.04660 * 4 3 2 30 30 H 1.08993 * 109.47694 * 330.00517 * 6 5 4 31 31 H 1.08998 * 109.46955 * 209.99966 * 6 5 4 32 32 H 1.09007 * 109.47140 * 54.98541 * 7 6 5 33 33 H 1.09000 * 109.47164 * 294.99141 * 7 6 5 34 34 H 1.09000 * 109.47028 * 70.00781 * 9 8 7 35 35 H 1.08993 * 109.47341 * 309.99844 * 9 8 7 36 36 H 0.96999 * 119.99467 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.46588 * 192.12207 * 18 8 7 38 38 H 1.09000 * 109.47005 * 312.11907 * 18 8 7 39 39 H 1.08993 * 115.55146 * 29.54468 * 19 18 8 40 40 H 1.08993 * 117.49947 * 0.02562 * 20 19 18 41 41 H 1.09004 * 117.49237 * 145.02575 * 20 19 18 42 42 H 1.08995 * 117.50223 * 214.98130 * 21 19 18 43 43 H 1.08998 * 117.49744 * 0.02562 * 21 19 18 44 44 H 1.07997 * 125.89949 * 179.73737 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9212 0.8940 5 6 3.0710 3.2139 0.5464 6 6 3.9537 4.2004 1.2667 7 6 5.3668 4.1411 0.6833 8 7 6.1960 5.1843 1.3015 9 6 6.5688 4.8159 2.6739 10 6 7.2028 6.0001 3.3571 11 1 7.3133 6.9343 2.8266 12 6 7.6370 5.8924 4.6613 13 7 7.4975 4.7564 5.3091 14 14 8.4222 7.3604 5.5085 15 1 7.3713 8.1614 6.1862 16 1 9.4064 6.8840 6.5132 17 1 9.1132 8.2030 4.4995 18 6 7.3879 5.4601 0.4882 19 6 6.9775 6.2126 -0.7792 20 6 7.2091 5.5150 -2.1211 21 6 8.0941 6.6929 -1.7084 22 6 2.3067 3.4745 -0.5956 23 7 1.6799 2.3750 -0.9276 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3192 1.4127 1.7357 30 1 3.9877 3.9508 2.3271 31 1 3.5514 5.2058 1.1428 32 1 5.3224 4.3031 -0.3938 33 1 5.8028 3.1629 0.8858 34 1 7.2781 3.9887 2.6481 35 1 5.6776 4.5135 3.2237 36 1 7.8027 4.6809 6.2267 37 1 8.0864 6.0691 1.0623 38 1 7.8661 4.5199 0.2138 39 1 6.0941 6.8441 -0.6857 40 1 7.6533 4.5199 -2.1009 41 1 6.4777 5.6875 -2.9107 42 1 7.9452 7.6401 -2.2265 43 1 9.1210 6.4724 -1.4170 44 1 2.2467 4.4192 -1.1155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276283956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:35 Heat of formation + Delta-G solvation = 95.614447 kcal Electronic energy + Delta-G solvation = -21266.337706 eV Core-core repulsion = 18220.991364 eV Total energy + Delta-G solvation = -3045.346342 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04532 -37.83310 -35.71902 -34.57419 -32.69452 -31.60791 -30.12842 -27.76496 -27.30311 -24.83935 -23.76996 -22.64678 -21.98978 -20.72650 -20.49188 -19.69159 -19.41677 -16.83554 -16.46826 -15.45804 -15.32050 -14.88453 -14.39564 -14.19745 -14.09939 -13.74624 -13.60192 -13.40755 -12.82686 -12.55980 -12.32127 -12.27583 -11.92168 -11.68673 -11.60502 -11.42601 -11.27472 -11.15722 -10.89443 -10.61144 -10.53706 -10.47823 -10.11357 -10.02913 -9.52687 -9.41155 -9.27502 -9.10760 -8.38923 -8.10858 -7.15561 -5.99413 -3.99738 2.03473 2.58526 3.01243 3.34547 3.40542 3.44330 4.19111 4.40388 4.46296 4.75801 4.87308 4.92643 5.02703 5.13925 5.24301 5.32616 5.34538 5.36773 5.48719 5.52453 5.69355 5.77245 5.88095 5.90474 5.93185 5.96866 6.07792 6.17656 6.23052 6.33655 6.38843 6.41980 6.57502 6.73159 6.79536 6.87888 6.93236 7.17376 7.38126 7.42003 7.84971 7.86872 8.17147 8.30129 8.63053 9.08851 9.64365 11.11477 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.004267 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.134116 B = 6561.171106 C = 8156.313912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 N -0.379 5.379 4 C 0.049 3.951 5 C -0.219 4.219 6 C -0.036 4.036 7 C 0.066 3.934 8 N -0.535 5.535 9 C 0.192 3.808 10 C -0.505 4.505 11 H 0.064 0.936 12 C 0.055 3.945 13 N -0.900 5.900 14 Si 0.895 3.105 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.093 3.907 19 C -0.130 4.130 20 C -0.191 4.191 21 C -0.185 4.185 22 C 0.051 3.949 23 N -0.304 5.304 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.171 0.829 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.018 0.982 34 H -0.012 1.012 35 H 0.034 0.966 36 H 0.260 0.740 37 H 0.089 0.911 38 H 0.018 0.982 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.779 -6.859 -11.692 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 N -0.163 5.163 4 C -0.096 4.096 5 C -0.230 4.230 6 C -0.075 4.075 7 C -0.063 4.063 8 N -0.259 5.259 9 C 0.067 3.933 10 C -0.544 4.544 11 H 0.082 0.918 12 C -0.146 4.146 13 N -0.540 5.540 14 Si 0.723 3.277 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.036 4.036 19 C -0.149 4.149 20 C -0.228 4.228 21 C -0.223 4.223 22 C -0.135 4.135 23 N -0.125 5.125 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.188 0.812 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.005 0.995 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.036 0.964 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.871 -7.236 -12.303 17.354 hybrid contribution 1.525 0.245 1.135 1.917 sum -8.346 -6.991 -11.168 15.597 Atomic orbital electron populations 1.22049 0.94058 1.02549 1.03546 1.21603 0.95847 0.77969 1.03484 1.48575 1.36214 1.09917 1.21553 1.22405 0.95709 0.94972 0.96474 1.20277 1.06732 0.95207 1.00823 1.19877 0.92510 0.96637 0.98485 1.21984 0.93177 0.93061 0.98091 1.62032 1.18295 1.41602 1.04021 1.19746 0.95453 0.95391 0.82708 1.21210 1.38076 0.97924 0.97183 0.91811 1.24973 0.96293 0.95912 0.97400 1.69956 1.47863 1.24762 1.11376 0.86543 0.79086 0.82761 0.79295 1.20665 1.21439 1.19856 1.21549 0.93008 0.97167 0.91828 1.22451 0.99809 1.02059 0.90567 1.23003 1.03468 0.96874 0.99458 1.22896 0.96554 0.98085 1.04731 1.23798 0.95969 0.97234 0.96473 1.77216 1.24359 0.97014 1.13940 0.91201 0.90976 0.92095 0.90174 0.88829 0.81200 0.91201 0.90653 0.92079 0.96348 0.99458 0.94831 0.93042 0.89313 0.96395 0.87349 0.89518 0.89567 0.89358 0.89177 0.80310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 10.10 37.16 0.38 -0.93 16 2 C 0.13 1.16 7.23 -4.04 -0.03 1.13 16 3 N -0.38 -4.88 3.68 -61.36 -0.23 -5.11 16 4 C 0.05 0.67 11.36 -17.22 -0.20 0.48 16 5 C -0.22 -3.25 5.35 -105.05 -0.56 -3.82 16 6 C -0.04 -0.60 5.72 -27.88 -0.16 -0.76 16 7 C 0.07 1.19 4.80 -3.83 -0.02 1.17 16 8 N -0.54 -11.30 4.39 -236.06 -1.04 -12.34 16 9 C 0.19 4.90 4.55 -4.97 -0.02 4.88 16 10 C -0.51 -13.98 8.28 -34.44 -0.28 -14.27 16 11 H 0.06 1.76 7.27 -52.49 -0.38 1.37 16 12 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 14 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 18 C 0.09 1.81 5.09 -3.82 -0.02 1.79 16 19 C -0.13 -2.09 4.98 -90.62 -0.45 -2.54 16 20 C -0.19 -2.62 10.01 -26.73 -0.27 -2.89 16 21 C -0.19 -2.56 10.25 -26.73 -0.27 -2.83 16 22 C 0.05 0.73 11.96 -17.37 -0.21 0.52 16 23 N -0.30 -4.45 12.42 30.62 0.38 -4.07 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 29 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.07 1.27 6.90 -51.93 -0.36 0.91 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.04 7.00 -51.93 -0.36 0.67 16 33 H 0.02 0.35 8.01 -51.93 -0.42 -0.07 16 34 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 35 H 0.03 0.91 6.65 -51.93 -0.35 0.56 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 37 H 0.09 1.92 6.59 -51.93 -0.34 1.58 16 38 H 0.02 0.35 7.78 -51.93 -0.40 -0.06 16 39 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 40 H 0.09 1.20 8.03 -51.93 -0.42 0.78 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.18 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 361.91 15.07 5.45 5.45 Total: -1.00 -30.96 361.91 -9.58 -40.54 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.66 Total: 1.34 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -2.21 Total: -16.62 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.15 Total: -47.24 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.96 -9.58 -40.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276283956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.156 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds