Wall clock time and date at job start Mon Mar 30 2020 02:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46822 * 2 1 4 4 C 1.34952 * 126.03417 * 124.99619 * 3 2 1 5 5 C 1.35317 * 107.73985 * 180.02562 * 4 3 2 6 6 C 1.50705 * 126.03431 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47150 * 90.00524 * 6 5 4 8 8 N 1.46896 * 109.47520 * 174.98619 * 7 6 5 9 9 C 1.46905 * 110.99589 * 74.74284 * 8 7 6 10 10 C 1.50704 * 109.46732 * 189.99993 * 9 8 7 11 11 H 1.07995 * 120.00303 * 0.27712 * 10 9 8 12 12 C 1.37881 * 119.99522 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00102 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99579 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47259 * 89.99769 * 14 12 10 16 16 H 1.48493 * 109.46943 * 209.99518 * 14 12 10 17 17 H 1.48503 * 109.47455 * 329.99681 * 14 12 10 18 18 C 1.46905 * 111.00073 * 198.69517 * 8 7 6 19 19 C 1.53000 * 109.46736 * 72.12347 * 18 8 7 20 20 C 1.53002 * 117.49485 * 243.83241 * 19 18 8 21 21 C 1.53003 * 117.49601 * 175.21206 * 19 18 8 22 22 C 1.39866 * 107.92373 * 0.26750 * 5 4 3 23 23 N 1.30838 * 108.20199 * 359.55086 * 22 5 4 24 24 H 1.09000 * 109.46956 * 60.00348 * 1 2 3 25 25 H 1.09008 * 109.46543 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47363 * 300.00003 * 1 2 3 27 27 H 1.08997 * 109.47363 * 239.99997 * 2 1 3 28 28 H 1.09000 * 109.46956 * 119.99651 * 2 1 3 29 29 H 1.07994 * 126.13190 * 0.04660 * 4 3 2 30 30 H 1.08993 * 109.47694 * 330.00517 * 6 5 4 31 31 H 1.08998 * 109.46955 * 209.99966 * 6 5 4 32 32 H 1.09007 * 109.47140 * 54.98541 * 7 6 5 33 33 H 1.09000 * 109.47164 * 294.99141 * 7 6 5 34 34 H 1.09000 * 109.47028 * 70.00781 * 9 8 7 35 35 H 1.08993 * 109.47341 * 309.99844 * 9 8 7 36 36 H 0.96999 * 119.99467 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.46588 * 192.12207 * 18 8 7 38 38 H 1.09000 * 109.47005 * 312.11907 * 18 8 7 39 39 H 1.08993 * 115.55146 * 29.54468 * 19 18 8 40 40 H 1.08993 * 117.49947 * 0.02562 * 20 19 18 41 41 H 1.09004 * 117.49237 * 145.02575 * 20 19 18 42 42 H 1.08995 * 117.50223 * 214.98130 * 21 19 18 43 43 H 1.08998 * 117.49744 * 0.02562 * 21 19 18 44 44 H 1.07997 * 125.89949 * 179.73737 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9212 0.8940 5 6 3.0710 3.2139 0.5464 6 6 3.9537 4.2004 1.2667 7 6 5.3668 4.1411 0.6833 8 7 6.1960 5.1843 1.3015 9 6 6.5688 4.8159 2.6739 10 6 7.2028 6.0001 3.3571 11 1 7.3133 6.9343 2.8266 12 6 7.6370 5.8924 4.6613 13 7 7.4975 4.7564 5.3091 14 14 8.4222 7.3604 5.5085 15 1 7.3713 8.1614 6.1862 16 1 9.4064 6.8840 6.5132 17 1 9.1132 8.2030 4.4995 18 6 7.3879 5.4601 0.4882 19 6 6.9775 6.2126 -0.7792 20 6 7.2091 5.5150 -2.1211 21 6 8.0941 6.6929 -1.7084 22 6 2.3067 3.4745 -0.5956 23 7 1.6799 2.3750 -0.9276 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3192 1.4127 1.7357 30 1 3.9877 3.9508 2.3271 31 1 3.5514 5.2058 1.1428 32 1 5.3224 4.3031 -0.3938 33 1 5.8028 3.1629 0.8858 34 1 7.2781 3.9887 2.6481 35 1 5.6776 4.5135 3.2237 36 1 7.8027 4.6809 6.2267 37 1 8.0864 6.0691 1.0623 38 1 7.8661 4.5199 0.2138 39 1 6.0941 6.8441 -0.6857 40 1 7.6533 4.5199 -2.1009 41 1 6.4777 5.6875 -2.9107 42 1 7.9452 7.6401 -2.2265 43 1 9.1210 6.4724 -1.4170 44 1 2.2467 4.4192 -1.1155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276283956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:34 Heat of formation + Delta-G solvation = 78.157167 kcal Electronic energy + Delta-G solvation = -21267.094710 eV Core-core repulsion = 18220.991364 eV Total energy + Delta-G solvation = -3046.103347 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.10408 -39.31068 -37.11224 -35.55927 -34.64360 -33.02331 -31.08150 -29.45399 -28.82302 -26.41275 -24.78520 -24.22926 -23.11388 -22.17406 -21.55015 -21.00544 -20.75338 -18.55253 -17.81508 -16.81479 -16.67607 -16.32452 -15.74260 -15.51264 -15.36695 -15.22355 -14.73374 -14.69637 -14.24028 -13.75940 -13.68171 -13.41048 -13.34552 -13.15848 -12.95320 -12.75632 -12.63202 -12.47161 -12.28733 -12.21359 -12.10491 -11.92749 -11.72760 -11.34190 -11.22724 -11.00519 -10.65849 -10.52307 -10.30998 -9.25139 -8.92633 -8.16137 -6.24672 0.97672 1.43250 1.44399 1.55275 1.68327 1.88201 2.43648 2.99705 3.16303 3.34080 3.62557 3.99101 4.02050 4.10372 4.15274 4.18624 4.20348 4.31694 4.40004 4.53035 4.54109 4.56374 4.71060 4.81161 4.83065 4.84015 4.91836 4.95954 4.98054 5.02183 5.09675 5.22279 5.25630 5.32906 5.34788 5.40045 5.47612 5.49201 5.71761 5.78519 6.13330 6.18074 6.45197 6.73943 6.78397 6.92339 7.44555 8.94902 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.004267 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.134116 B = 6561.171106 C = 8156.313912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.120 3.880 3 N -0.376 5.376 4 C 0.051 3.949 5 C -0.240 4.240 6 C -0.022 4.022 7 C 0.073 3.927 8 N -0.538 5.538 9 C 0.209 3.791 10 C -0.520 4.520 11 H 0.061 0.939 12 C 0.003 3.997 13 N -0.934 5.934 14 Si 0.964 3.036 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.265 1.265 18 C 0.097 3.903 19 C -0.150 4.150 20 C -0.174 4.174 21 C -0.173 4.173 22 C 0.048 3.952 23 N -0.323 5.323 24 H 0.052 0.948 25 H 0.100 0.900 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.187 0.813 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.006 0.994 34 H -0.045 1.045 35 H 0.013 0.987 36 H 0.263 0.737 37 H 0.060 0.940 38 H 0.013 0.987 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.051 -6.641 -12.979 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.001 3.999 3 N -0.159 5.159 4 C -0.096 4.096 5 C -0.252 4.252 6 C -0.061 4.061 7 C -0.055 4.055 8 N -0.262 5.262 9 C 0.083 3.917 10 C -0.558 4.558 11 H 0.080 0.920 12 C -0.195 4.195 13 N -0.575 5.575 14 Si 0.789 3.211 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.190 1.190 18 C -0.031 4.031 19 C -0.169 4.169 20 C -0.210 4.210 21 C -0.210 4.210 22 C -0.137 4.137 23 N -0.145 5.145 24 H 0.072 0.928 25 H 0.119 0.881 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.137 0.863 29 H 0.204 0.796 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.024 0.976 34 H -0.027 1.027 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.031 0.969 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.108 0.892 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -10.161 -7.028 -13.624 18.392 hybrid contribution 1.587 0.078 1.506 2.189 sum -8.574 -6.950 -12.118 16.391 Atomic orbital electron populations 1.22002 0.93379 1.03983 1.02157 1.22029 0.96448 0.76139 1.05319 1.48931 1.35432 1.10912 1.20598 1.22693 0.95312 0.94822 0.96735 1.20131 1.07731 0.95541 1.01786 1.19632 0.92022 0.97224 0.97208 1.21998 0.93263 0.91417 0.98805 1.62014 1.19130 1.42467 1.02566 1.19384 0.93421 0.93723 0.85198 1.21489 1.38314 0.98308 0.97698 0.92032 1.25847 0.96722 0.98789 0.98101 1.70080 1.48768 1.26842 1.11791 0.85459 0.78251 0.79202 0.78181 1.19905 1.20904 1.18953 1.21475 0.91934 0.96863 0.92839 1.22197 1.01183 1.03474 0.89996 1.23062 1.03359 0.96827 0.97801 1.23003 0.95825 0.99191 1.03007 1.24074 0.95461 0.97958 0.96216 1.77178 1.24925 0.97538 1.14857 0.92845 0.88140 0.93118 0.89033 0.86333 0.79595 0.93510 0.90841 0.90338 0.97596 1.02745 0.96875 0.92822 0.92133 0.96885 0.87626 0.89612 0.87446 0.87253 0.89250 0.78569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 10.10 71.98 0.73 -1.51 16 2 C 0.12 1.87 7.23 86.38 0.62 2.50 16 3 N -0.38 -9.19 3.68 -348.05 -1.28 -10.47 16 4 C 0.05 1.34 11.36 83.54 0.95 2.29 16 5 C -0.24 -7.08 5.35 -20.14 -0.11 -7.19 16 6 C -0.02 -0.74 5.72 29.85 0.17 -0.57 16 7 C 0.07 2.70 4.80 86.30 0.41 3.11 16 8 N -0.54 -23.41 4.39 -900.77 -3.95 -27.36 16 9 C 0.21 11.18 4.55 85.56 0.39 11.57 16 10 C -0.52 -29.57 8.28 25.60 0.21 -29.36 16 11 H 0.06 3.46 7.27 -2.91 -0.02 3.44 16 12 C 0.00 0.18 5.46 84.66 0.46 0.65 16 13 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 14 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 C 0.10 3.86 5.09 86.30 0.44 4.30 16 19 C -0.15 -4.66 4.98 -10.79 -0.05 -4.72 16 20 C -0.17 -4.34 10.01 30.60 0.31 -4.04 16 21 C -0.17 -4.39 10.25 30.60 0.31 -4.07 16 22 C 0.05 1.33 11.96 85.23 1.02 2.35 16 23 N -0.32 -9.12 12.42 -57.03 -0.71 -9.83 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.12 1.26 8.07 -2.39 -0.02 1.24 16 29 H 0.19 4.16 8.06 -2.91 -0.02 4.13 16 30 H 0.05 1.78 6.90 -2.39 -0.02 1.77 16 31 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.08 2.62 7.00 -2.38 -0.02 2.60 16 33 H 0.01 0.23 8.01 -2.39 -0.02 0.21 16 34 H -0.05 -2.65 8.12 -2.39 -0.02 -2.67 16 35 H 0.01 0.75 6.65 -2.39 -0.02 0.73 16 36 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.06 2.71 6.59 -2.39 -0.02 2.69 16 38 H 0.01 0.52 7.78 -2.39 -0.02 0.50 16 39 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.09 2.18 8.03 -2.39 -0.02 2.16 16 41 H 0.11 2.27 8.14 -2.38 -0.02 2.26 16 42 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.20 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -67.88 361.91 3.18 -64.70 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.95 Total: 17.06 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 5.87 Total: -24.70 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -5.66 Total: -103.59 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.88 3.18 -64.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276283956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.855 kcal (2) G-P(sol) polarization free energy of solvation -67.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds