Wall clock time and date at job start Mon Mar 30 2020 01:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.46979 * 2 1 4 4 N 1.46506 * 109.46964 * 119.99819 * 2 1 3 5 5 C 1.46500 * 119.99999 * 305.31799 * 4 2 1 6 6 C 1.39003 * 119.99985 * 125.31901 * 4 2 1 7 7 C 1.39145 * 119.70519 * 11.23350 * 6 4 2 8 8 C 1.38292 * 119.09522 * 179.97438 * 7 6 4 9 9 C 1.38889 * 118.50830 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.33330 * 179.97438 * 9 8 7 11 11 N 1.46900 * 109.46876 * 90.00088 * 10 9 8 12 12 C 1.46908 * 110.99845 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.47118 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47122 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00042 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00258 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00340 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99568 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47091 * 90.00518 * 18 16 14 20 20 H 1.48507 * 109.47171 * 210.00488 * 18 16 14 21 21 H 1.48502 * 109.47524 * 330.00097 * 18 16 14 22 22 C 1.38024 * 119.32664 * 0.25038 * 9 8 7 23 23 N 1.31971 * 120.85479 * 359.45234 * 22 9 8 24 24 H 1.08998 * 109.47597 * 300.00058 * 1 2 3 25 25 H 1.08998 * 109.47055 * 60.00002 * 1 2 3 26 26 H 1.09003 * 109.47152 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47597 * 239.99942 * 2 1 3 28 28 H 1.09008 * 109.47227 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47225 * 299.99894 * 3 2 1 30 30 H 1.09003 * 109.47253 * 60.00279 * 3 2 1 31 31 H 1.09006 * 109.46960 * 269.99647 * 5 4 2 32 32 H 1.08996 * 109.47037 * 29.99620 * 5 4 2 33 33 H 1.08996 * 109.46908 * 150.00426 * 5 4 2 34 34 H 1.07999 * 120.44654 * 359.97438 * 7 6 4 35 35 H 1.08000 * 120.74761 * 179.97438 * 8 7 6 36 36 H 1.08997 * 109.47348 * 329.99586 * 10 9 8 37 37 H 1.08999 * 109.46868 * 209.99905 * 10 9 8 38 38 H 1.00893 * 111.00022 * 303.94577 * 11 10 9 39 39 H 1.09001 * 109.47084 * 59.99698 * 12 11 10 40 40 H 1.08999 * 109.46829 * 300.00402 * 12 11 10 41 41 H 1.08998 * 109.47401 * 300.00389 * 13 12 11 42 42 H 1.09001 * 109.47156 * 60.00028 * 13 12 11 43 43 H 0.96994 * 120.00273 * 179.97438 * 17 16 14 44 44 H 1.07993 * 119.56686 * 179.75327 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.5709 -0.2616 2.5237 6 6 2.9061 -1.7529 1.0718 7 6 3.5085 -2.0078 -0.1564 8 6 4.3901 -3.0676 -0.2659 9 6 4.6406 -3.8406 0.8605 10 6 5.5937 -5.0056 0.7874 11 7 6.9527 -4.5470 1.1048 12 6 7.9111 -5.6588 1.0438 13 6 9.3121 -5.1434 1.3788 14 6 10.2953 -6.2837 1.3157 15 1 9.9548 -7.2768 1.0624 16 6 11.6293 -6.0594 1.5823 17 7 12.4873 -7.0546 1.5277 18 14 12.2180 -4.3417 2.0210 19 1 12.1485 -4.1555 3.4926 20 1 13.6208 -4.1679 1.5658 21 1 11.3529 -3.3362 1.3534 22 6 4.0034 -3.5343 2.0459 23 7 3.1710 -2.5132 2.1228 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.2506 0.4991 2.9079 32 1 0.5652 0.1526 2.4518 33 1 1.5642 -1.1172 3.1989 34 1 3.2904 -1.3863 -1.0123 35 1 4.8724 -3.2897 -1.2063 36 1 5.5775 -5.4258 -0.2181 37 1 5.2907 -5.7683 1.5048 38 1 7.2323 -3.7945 0.4937 39 1 7.9110 -6.0839 0.0402 40 1 7.6240 -6.4258 1.7632 41 1 9.5988 -4.3766 0.6592 42 1 9.3124 -4.7180 2.3824 43 1 13.4258 -6.8967 1.7149 44 1 4.1923 -4.1353 2.9231 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276666253.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:10 Heat of formation + Delta-G solvation = 18.348647 kcal Electronic energy + Delta-G solvation = -20727.781165 eV Core-core repulsion = 17679.084326 eV Total energy + Delta-G solvation = -3048.696839 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.33450 -38.72184 -37.41110 -35.16856 -33.95791 -32.86775 -32.36958 -30.63960 -28.14782 -27.83326 -26.49021 -24.87537 -23.91676 -22.72942 -22.23447 -20.82060 -18.94685 -18.70699 -17.66155 -16.84923 -16.32613 -16.05748 -16.01155 -15.88001 -15.34097 -15.22919 -14.82079 -14.53472 -14.27669 -14.08307 -13.99200 -13.88651 -13.80615 -13.25303 -13.17251 -12.89057 -12.86114 -12.65506 -12.34012 -12.20985 -11.99228 -11.81751 -11.69104 -11.58657 -11.40321 -10.81967 -10.76587 -10.61582 -10.30963 -9.28495 -8.40601 -8.29428 -6.33651 0.37222 0.50764 1.37964 1.38474 1.51399 1.99430 2.37025 2.90841 3.06171 3.50911 3.62337 3.88757 3.97435 4.05841 4.11377 4.15486 4.22730 4.32539 4.45378 4.51238 4.53060 4.66083 4.69729 4.74868 4.77759 4.80791 4.91853 4.95448 4.98687 4.99122 5.01621 5.13871 5.29294 5.30570 5.35700 5.44995 5.51317 5.63941 5.69960 6.12140 6.16392 6.26616 6.45469 6.53768 6.75158 7.24100 7.31226 8.87150 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031127 B = 0.002749 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.314048 B =10181.933182 C =10492.932348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 C -0.159 4.159 4 N -0.612 5.612 5 C 0.097 3.903 6 C 0.385 3.615 7 C -0.240 4.240 8 C -0.030 4.030 9 C -0.195 4.195 10 C 0.114 3.886 11 N -0.692 5.692 12 C 0.087 3.913 13 C -0.005 4.005 14 C -0.533 4.533 15 H 0.034 0.966 16 C 0.005 3.995 17 N -0.950 5.950 18 Si 0.954 3.046 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.248 1.248 22 C 0.156 3.844 23 N -0.565 5.565 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.042 0.958 37 H 0.079 0.921 38 H 0.340 0.660 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.267 0.733 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.233 18.293 -4.922 33.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 C -0.217 4.217 4 N -0.326 5.326 5 C -0.046 4.046 6 C 0.150 3.850 7 C -0.265 4.265 8 C -0.056 4.056 9 C -0.200 4.200 10 C -0.015 4.015 11 N -0.323 5.323 12 C -0.042 4.042 13 C -0.043 4.043 14 C -0.571 4.571 15 H 0.052 0.948 16 C -0.192 4.192 17 N -0.591 5.591 18 Si 0.777 3.223 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.171 1.171 22 C -0.002 4.002 23 N -0.282 5.282 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.067 0.933 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.169 0.831 35 H 0.165 0.835 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.076 0.924 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -27.698 18.532 -3.413 33.500 hybrid contribution 1.327 -0.300 -1.263 1.856 sum -26.371 18.232 -4.676 32.399 Atomic orbital electron populations 1.22146 0.93732 1.02161 1.03588 1.21297 0.94975 0.93267 0.86946 1.22160 1.00973 0.95299 1.03306 1.46611 1.46865 1.31749 1.07416 1.21528 0.99704 0.99871 0.83462 1.18688 0.88946 0.87528 0.89825 1.21612 1.03441 1.03040 0.98364 1.21485 0.93702 0.91936 0.98517 1.20462 1.02944 1.01401 0.95205 1.20635 0.86654 0.94197 0.99990 1.60571 1.01656 1.10871 1.59178 1.21642 0.91461 0.92667 0.98437 1.19438 0.92694 0.95442 0.96693 1.21421 0.93103 0.95644 1.46936 0.94780 1.25993 0.96949 1.01557 0.94705 1.70059 1.03686 1.33965 1.51401 0.85607 0.77477 0.79962 0.79245 1.19429 1.20891 1.17144 1.22426 0.89326 0.91396 0.97019 1.67190 1.20917 1.08293 1.31804 0.91696 0.89452 0.93276 0.88784 0.93525 0.89581 0.92202 0.93992 0.89764 0.91874 0.83102 0.83481 0.93944 0.90306 0.84271 0.96164 0.92317 0.96321 0.96254 0.92447 0.82541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.06 71.98 0.65 -0.76 16 2 C 0.14 1.66 3.10 44.99 0.14 1.80 16 3 C -0.16 -1.59 9.27 71.98 0.67 -0.93 16 4 N -0.61 -11.14 2.88 -704.67 -2.03 -13.17 16 5 C 0.10 1.60 9.82 127.77 1.25 2.85 16 6 C 0.38 9.02 7.33 133.07 0.98 10.00 16 7 C -0.24 -4.92 9.24 22.50 0.21 -4.71 16 8 C -0.03 -0.65 9.85 22.44 0.22 -0.43 16 9 C -0.20 -4.86 5.41 -19.76 -0.11 -4.96 16 10 C 0.11 3.04 5.83 85.56 0.50 3.54 16 11 N -0.69 -22.66 6.49 -517.94 -3.36 -26.02 16 12 C 0.09 3.46 5.62 86.30 0.49 3.95 16 13 C 0.00 -0.23 4.30 29.85 0.13 -0.10 16 14 C -0.53 -31.29 9.66 25.60 0.25 -31.04 16 15 H 0.03 2.18 7.99 -2.91 -0.02 2.16 16 16 C 0.00 0.29 5.47 84.66 0.46 0.75 16 17 N -0.95 -60.40 13.96 21.45 0.30 -60.11 16 18 Si 0.95 45.42 27.47 68.60 1.88 47.31 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 21 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 22 C 0.16 4.11 10.85 84.62 0.92 5.03 16 23 N -0.56 -15.27 9.08 -193.26 -1.75 -17.03 16 24 H 0.06 0.53 6.51 -2.39 -0.02 0.52 16 25 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.09 1.06 5.51 -2.39 -0.01 1.05 16 28 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.60 7.81 -2.39 -0.02 0.58 16 31 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.08 0.97 6.16 -2.39 -0.01 0.95 16 33 H 0.06 1.26 7.24 -2.39 -0.02 1.24 16 34 H 0.15 2.28 5.98 -2.91 -0.02 2.26 16 35 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.04 1.06 8.09 -2.39 -0.02 1.04 16 37 H 0.08 2.07 8.09 -2.39 -0.02 2.05 16 38 H 0.34 10.60 8.72 -89.70 -0.78 9.82 16 39 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 42 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 43 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -69.76 353.74 1.93 -67.83 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.13 Total: 16.20 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 6.75 Total: -15.02 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -6.85 Total: -116.31 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal Total: -69.76 1.93 -67.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276666253.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.182 kcal (2) G-P(sol) polarization free energy of solvation -69.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds