Wall clock time and date at job start Mon Mar 30 2020 01:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47473 * 2 1 4 4 N 1.46496 * 109.46740 * 120.00529 * 2 1 3 5 5 N 1.40087 * 126.03700 * 300.01202 * 4 2 1 6 6 C 1.30838 * 108.20570 * 180.02562 * 5 4 2 7 7 C 1.39865 * 108.20611 * 0.02562 * 6 5 4 8 8 C 1.34954 * 126.04032 * 120.30950 * 4 2 1 9 9 C 1.50697 * 126.12495 * 359.97438 * 8 4 2 10 10 N 1.46899 * 109.47306 * 275.20579 * 9 8 4 11 11 C 1.46904 * 110.99931 * 170.00273 * 10 9 8 12 12 C 1.50695 * 109.46708 * 284.03580 * 11 10 9 13 13 H 1.07996 * 120.00439 * 4.92009 * 12 11 10 14 14 C 1.37882 * 119.99756 * 184.92632 * 12 11 10 15 15 N 1.31510 * 120.00108 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99996 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47744 * 89.99802 * 16 14 12 18 18 H 1.48503 * 109.47264 * 210.00112 * 16 14 12 19 19 H 1.48510 * 109.46970 * 329.99575 * 16 14 12 20 20 C 1.46899 * 110.99734 * 293.95081 * 10 9 8 21 21 C 1.52998 * 109.46906 * 163.83893 * 20 10 9 22 22 C 1.53002 * 117.50126 * 245.41637 * 21 20 10 23 23 C 1.53002 * 117.50124 * 176.75473 * 21 20 10 24 24 H 1.09002 * 109.46843 * 300.00404 * 1 2 3 25 25 H 1.09002 * 109.46606 * 59.99705 * 1 2 3 26 26 H 1.08999 * 109.47402 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46843 * 239.99596 * 2 1 3 28 28 H 1.08996 * 109.47187 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47069 * 300.00170 * 3 2 1 30 30 H 1.09000 * 109.47110 * 60.00388 * 3 2 1 31 31 H 1.08001 * 125.89922 * 179.97438 * 6 5 4 32 32 H 1.07995 * 126.04363 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.47091 * 35.20747 * 9 8 4 34 34 H 1.09000 * 109.46808 * 155.20289 * 9 8 4 35 35 H 1.08994 * 109.47182 * 44.03471 * 11 10 9 36 36 H 1.08995 * 109.46844 * 164.03252 * 11 10 9 37 37 H 0.97003 * 120.00468 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.47775 * 283.84430 * 20 10 9 39 39 H 1.09003 * 109.46864 * 43.84545 * 20 10 9 40 40 H 1.08999 * 115.54837 * 31.08737 * 21 20 10 41 41 H 1.08995 * 117.49886 * 0.02562 * 22 21 20 42 42 H 1.08999 * 117.49926 * 145.02077 * 22 21 20 43 43 H 1.08994 * 117.50374 * 214.98504 * 23 21 20 44 44 H 1.09007 * 117.49593 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.7587 -0.3243 2.5230 6 6 2.3632 -1.1782 3.3087 7 6 3.0266 -2.1142 2.5086 8 6 2.8021 -1.7891 1.2143 9 6 3.3305 -2.5236 0.0092 10 7 2.3213 -3.4816 -0.4617 11 6 2.6977 -4.0447 -1.7653 12 6 2.4408 -3.0258 -2.8455 13 1 2.1138 -2.0307 -2.5825 14 6 2.6232 -3.3641 -4.1696 15 7 2.3986 -2.4751 -5.1124 16 14 3.1880 -5.0855 -4.6246 17 1 2.0036 -5.9592 -4.8223 18 1 3.9784 -5.0314 -5.8807 19 1 4.0314 -5.6346 -3.5325 20 6 2.1030 -4.5452 0.5278 21 6 0.7980 -5.2777 0.2096 22 6 -0.3426 -5.1615 1.2228 23 6 0.4289 -6.4765 1.0858 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6769 1.9563 0.8900 31 1 2.3525 -1.1626 4.3885 32 1 3.6168 -2.9470 2.8613 33 1 3.5511 -1.8092 -0.7838 34 1 4.2408 -3.0585 0.2800 35 1 3.7559 -4.3058 -1.7564 36 1 2.1046 -4.9382 -1.9600 37 1 2.5272 -2.7130 -6.0440 38 1 2.9334 -5.2504 0.4926 39 1 2.0402 -4.1073 1.5240 40 1 0.5306 -5.3247 -0.8460 41 1 -0.1634 -4.5628 2.1158 42 1 -1.3604 -5.1324 0.8337 43 1 -0.0815 -7.3119 0.6068 44 1 1.1157 -6.7430 1.8893 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279521198.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:35 Heat of formation + Delta-G solvation = 101.777433 kcal Electronic energy + Delta-G solvation = -22613.338051 eV Core-core repulsion = 19568.258956 eV Total energy + Delta-G solvation = -3045.079095 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95014 -37.86084 -35.68991 -35.23590 -32.60836 -30.86783 -29.38259 -28.10658 -26.99972 -26.72631 -23.70723 -22.53930 -22.12422 -21.27586 -20.25377 -19.57829 -18.72281 -17.08942 -16.35131 -15.46058 -15.16917 -14.53362 -14.49447 -14.37077 -13.98760 -13.71503 -13.38628 -12.99925 -12.98846 -12.56652 -12.47855 -12.36139 -11.96752 -11.92662 -11.68118 -11.29448 -11.19963 -11.08613 -10.96896 -10.80220 -10.60962 -10.43098 -10.14978 -10.04937 -9.86897 -9.59400 -9.40083 -8.88564 -8.62646 -8.14143 -7.48236 -6.12513 -4.09813 2.26967 2.89729 3.15794 3.23429 3.31757 3.33323 4.09412 4.35726 4.66802 4.83725 4.99374 5.14836 5.20743 5.24065 5.24651 5.25537 5.44660 5.51952 5.57781 5.79990 5.82657 5.86792 5.87571 5.90915 5.97513 6.01141 6.05853 6.10286 6.12076 6.15747 6.20527 6.35250 6.38536 6.46985 6.54339 6.66804 6.75422 6.84874 7.03924 7.44784 7.54270 7.80263 7.89090 8.13920 8.56869 8.93990 9.49521 11.00303 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013089 B = 0.007108 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.682518 B = 3938.406573 C = 5199.286175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 C -0.158 4.158 4 N -0.343 5.343 5 N -0.304 5.304 6 C 0.036 3.964 7 C -0.289 4.289 8 C 0.115 3.885 9 C 0.116 3.884 10 N -0.517 5.517 11 C 0.161 3.839 12 C -0.508 4.508 13 H 0.079 0.921 14 C 0.071 3.929 15 N -0.898 5.898 16 Si 0.872 3.128 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.078 3.922 21 C -0.133 4.133 22 C -0.175 4.175 23 C -0.189 4.189 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.174 0.826 32 H 0.137 0.863 33 H 0.097 0.903 34 H 0.049 0.951 35 H -0.009 1.009 36 H 0.030 0.970 37 H 0.264 0.736 38 H 0.028 0.972 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 -0.316 12.790 12.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.051 3.949 3 C -0.216 4.216 4 N -0.125 5.125 5 N -0.126 5.126 6 C -0.149 4.149 7 C -0.320 4.320 8 C -0.015 4.015 9 C -0.013 4.013 10 N -0.241 5.241 11 C 0.035 3.965 12 C -0.546 4.546 13 H 0.097 0.903 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.699 3.301 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.050 4.050 21 C -0.151 4.151 22 C -0.212 4.212 23 C -0.226 4.226 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.191 0.809 32 H 0.155 0.845 33 H 0.116 0.884 34 H 0.067 0.933 35 H 0.008 0.992 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.990 1.095 12.324 12.531 hybrid contribution 1.512 -2.178 -0.226 2.661 sum -0.478 -1.083 12.098 12.156 Atomic orbital electron populations 1.22014 0.93454 1.03282 1.02234 1.21425 0.95744 0.93273 0.84419 1.22115 1.01502 0.95134 1.02829 1.48760 1.37483 1.21221 1.05037 1.77198 1.24138 1.24187 0.87032 1.23624 0.97623 0.94101 0.99563 1.21124 1.13257 1.06105 0.91473 1.21175 0.94168 0.89478 0.96666 1.20624 0.92601 0.95440 0.92650 1.61894 1.44026 1.15122 1.03090 1.20245 0.93830 0.96166 0.86216 1.20970 1.45343 0.99285 0.89036 0.90320 1.24867 0.95029 0.96794 0.96426 1.69875 1.49326 1.34230 1.00258 0.86917 0.79328 0.85607 0.78243 1.20173 1.21214 1.19262 1.21734 0.94291 0.92520 0.96452 1.22297 0.96134 0.99188 0.97529 1.22906 0.96838 0.99903 1.01556 1.22942 1.04238 0.92087 1.03364 0.92195 0.90995 0.91518 0.86408 0.92413 0.90751 0.91775 0.80934 0.84519 0.88450 0.93285 0.99182 0.95237 0.92627 0.95382 0.90733 0.87095 0.89280 0.89401 0.89267 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.45 37.16 0.35 -1.95 16 2 C 0.15 2.45 3.65 -67.93 -0.25 2.20 16 3 C -0.16 -2.18 9.45 37.16 0.35 -1.83 16 4 N -0.34 -5.77 3.28 -50.69 -0.17 -5.94 16 5 N -0.30 -5.05 12.43 30.62 0.38 -4.67 16 6 C 0.04 0.52 12.02 -17.37 -0.21 0.31 16 7 C -0.29 -4.34 9.30 -40.01 -0.37 -4.72 16 8 C 0.11 1.93 5.73 -82.26 -0.47 1.46 16 9 C 0.12 2.08 4.73 -4.98 -0.02 2.06 16 10 N -0.52 -10.06 4.37 -237.53 -1.04 -11.10 16 11 C 0.16 3.64 3.61 -4.98 -0.02 3.62 16 12 C -0.51 -13.39 9.17 -34.44 -0.32 -13.71 16 13 H 0.08 2.22 7.47 -52.49 -0.39 1.83 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -26.22 13.96 55.43 0.77 -25.44 16 16 Si 0.87 20.68 27.37 -169.99 -4.65 16.02 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.13 6.69 56.52 0.38 -5.76 16 20 C 0.08 1.32 5.11 -3.83 -0.02 1.30 16 21 C -0.13 -2.17 5.58 -90.62 -0.51 -2.68 16 22 C -0.17 -2.51 10.18 -26.69 -0.27 -2.78 16 23 C -0.19 -2.52 10.26 -26.69 -0.27 -2.80 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.12 2.14 6.36 -51.93 -0.33 1.81 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.10 1.89 6.54 -51.93 -0.34 1.55 16 34 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 35 H -0.01 -0.22 7.39 -51.93 -0.38 -0.60 16 36 H 0.03 0.68 5.62 -51.93 -0.29 0.38 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 39 H 0.07 1.21 5.56 -51.93 -0.29 0.92 16 40 H 0.11 2.05 6.89 -51.93 -0.36 1.69 16 41 H 0.09 1.27 8.04 -51.93 -0.42 0.85 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -28.92 353.76 -8.94 -37.86 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.45 Total: 5.58 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -2.12 Total: -17.66 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.05 Total: -47.14 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.65 Total: 16.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.92 -8.94 -37.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279521198.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.641 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds