Wall clock time and date at job start Mon Mar 30 2020 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47467 * 2 1 4 4 C 1.34950 * 126.03705 * 125.25429 * 3 2 1 5 5 C 1.35322 * 107.74744 * 180.14822 * 4 3 2 6 6 C 1.50690 * 126.04310 * 179.87475 * 5 4 3 7 7 C 1.53004 * 109.47115 * 269.71933 * 6 5 4 8 8 N 1.46504 * 109.46813 * 179.97438 * 7 6 5 9 9 C 1.36932 * 120.00287 * 270.00110 * 8 7 6 10 10 H 1.07996 * 120.00490 * 142.00950 * 9 8 7 11 11 C 1.38818 * 119.99879 * 322.00334 * 9 8 7 12 12 N 1.31620 * 120.00103 * 156.10167 * 11 9 8 13 13 Si 1.86801 * 119.99815 * 336.10330 * 11 9 8 14 14 H 1.48495 * 109.46801 * 95.29108 * 13 11 9 15 15 H 1.48502 * 109.46967 * 215.28916 * 13 11 9 16 16 H 1.48496 * 109.47166 * 335.28904 * 13 11 9 17 17 C 1.46507 * 119.99890 * 90.00134 * 8 7 6 18 18 C 1.54269 * 110.03294 * 242.57657 * 17 8 7 19 19 C 1.54962 * 104.16013 * 217.13540 * 18 17 8 20 20 C 1.54896 * 102.77816 * 37.88655 * 19 18 17 21 21 C 1.53876 * 110.03199 * 125.35890 * 17 8 7 22 22 C 1.39869 * 107.91417 * 359.61650 * 5 4 3 23 23 N 1.30836 * 108.20709 * 0.23483 * 22 5 4 24 24 H 1.09001 * 109.46469 * 60.00095 * 1 2 3 25 25 H 1.08998 * 109.47046 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46955 * 300.00298 * 1 2 3 27 27 H 1.09006 * 109.47497 * 239.99768 * 2 1 3 28 28 H 1.09002 * 109.47176 * 120.00144 * 2 1 3 29 29 H 1.08000 * 126.12947 * 0.02562 * 4 3 2 30 30 H 1.09001 * 109.47111 * 149.71943 * 6 5 4 31 31 H 1.09002 * 109.47365 * 29.71639 * 6 5 4 32 32 H 1.08997 * 109.47154 * 299.99775 * 7 6 5 33 33 H 1.08991 * 109.47024 * 60.00122 * 7 6 5 34 34 H 0.96998 * 119.99707 * 180.02562 * 12 11 9 35 35 H 1.09004 * 110.01357 * 3.96429 * 17 8 7 36 36 H 1.08998 * 110.48228 * 335.78560 * 18 17 8 37 37 H 1.09004 * 110.48355 * 98.42383 * 18 17 8 38 38 H 1.08998 * 110.72097 * 279.57829 * 19 18 17 39 39 H 1.09000 * 110.92292 * 156.29375 * 19 18 17 40 40 H 1.08993 * 110.48361 * 203.40606 * 20 19 18 41 41 H 1.09000 * 110.59246 * 80.81450 * 20 19 18 42 42 H 1.09005 * 110.02786 * 238.56910 * 21 17 8 43 43 H 1.09002 * 110.03292 * 0.02562 * 21 17 8 44 44 H 1.08008 * 125.89436 * 180.21972 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8769 1.9197 0.8911 5 6 3.0716 3.2136 0.5463 6 6 3.9549 4.1998 1.2660 7 6 3.1398 4.9277 2.3369 8 7 3.9988 5.8860 3.0370 9 6 4.6901 5.4975 4.1533 10 1 5.6915 5.8644 4.3232 11 6 4.1038 4.6321 5.0667 12 7 4.8589 3.8948 5.8531 13 14 2.2429 4.5140 5.1796 14 1 1.7675 3.3805 4.3464 15 1 1.8460 4.2901 6.5930 16 1 1.6361 5.7775 4.6893 17 6 4.1180 7.2600 2.5428 18 6 5.5752 7.5467 2.1251 19 6 5.8091 9.0181 2.5513 20 6 5.0397 9.1129 3.8923 21 6 3.7774 8.2555 3.6656 22 6 2.3127 3.4723 -0.5998 23 7 1.6810 2.3746 -0.9282 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.3265 1.4099 1.7304 30 1 4.3469 4.9247 0.5525 31 1 4.7826 3.6698 1.7373 32 1 2.3121 5.4577 1.8657 33 1 2.7479 4.2028 3.0503 34 1 4.4491 3.2898 6.4911 35 1 3.4500 7.4107 1.6947 36 1 6.2607 6.8834 2.6524 37 1 5.6913 7.4379 1.0467 38 1 5.3890 9.7041 1.8157 39 1 6.8706 9.2162 2.7001 40 1 4.7659 10.1467 4.1027 41 1 5.6374 8.7039 4.7069 42 1 2.9447 8.8899 3.3621 43 1 3.5239 7.7163 4.5784 44 1 2.2575 4.4155 -1.1232 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284829600.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:10 Heat of formation + Delta-G solvation = 85.551019 kcal Electronic energy + Delta-G solvation = -22099.007081 eV Core-core repulsion = 19053.224356 eV Total energy + Delta-G solvation = -3045.782725 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.89302 -37.88131 -35.11342 -34.20547 -31.99082 -30.87206 -29.97337 -27.88111 -27.56566 -26.42861 -24.00735 -23.32030 -21.65223 -20.44263 -20.02643 -19.52559 -18.86305 -16.71874 -16.34890 -15.38705 -15.29441 -15.19466 -14.30355 -14.16699 -13.94058 -13.51363 -13.23211 -13.06678 -12.65903 -12.47724 -12.41662 -12.21840 -12.07374 -11.81792 -11.47998 -11.22128 -11.06768 -10.77750 -10.53202 -10.42112 -10.40279 -10.30016 -10.13276 -9.92896 -9.70488 -9.54212 -9.35298 -9.13561 -8.43134 -7.98988 -6.67249 -5.95690 -3.33469 2.17695 2.72169 3.16402 3.35220 3.50112 3.57179 4.52556 4.57646 4.87470 5.01103 5.04823 5.18291 5.27492 5.30638 5.40903 5.45933 5.47802 5.63280 5.67381 5.85289 5.88732 6.03357 6.10252 6.19254 6.25414 6.27123 6.33338 6.37063 6.45922 6.50833 6.56158 6.59013 6.63182 6.79910 6.89936 6.99892 7.03941 7.14711 7.20465 7.25329 7.32868 7.98371 8.13481 8.47914 9.09843 9.79771 10.22647 11.20144 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.005382 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.737123 B = 5201.508913 C = 6134.852585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 N -0.380 5.380 4 C 0.049 3.951 5 C -0.218 4.218 6 C -0.057 4.057 7 C 0.146 3.854 8 N -0.601 5.601 9 C -0.252 4.252 10 H 0.079 0.921 11 C 0.038 3.962 12 N -0.900 5.900 13 Si 0.869 3.131 14 H -0.288 1.288 15 H -0.305 1.305 16 H -0.269 1.269 17 C 0.173 3.827 18 C -0.134 4.134 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.134 4.134 22 C 0.047 3.953 23 N -0.306 5.306 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.171 0.829 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.261 0.739 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.042 0.958 43 H 0.079 0.921 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 -1.581 -10.340 11.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.012 3.988 3 N -0.164 5.164 4 C -0.096 4.096 5 C -0.229 4.229 6 C -0.098 4.098 7 C 0.020 3.980 8 N -0.322 5.322 9 C -0.381 4.381 10 H 0.097 0.903 11 C -0.162 4.162 12 N -0.542 5.542 13 Si 0.700 3.300 14 H -0.216 1.216 15 H -0.234 1.234 16 H -0.194 1.194 17 C 0.066 3.934 18 C -0.173 4.173 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.173 4.173 22 C -0.139 4.139 23 N -0.128 5.128 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.188 0.812 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.098 0.902 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.242 -2.406 -11.001 12.421 hybrid contribution -0.535 0.120 0.856 1.017 sum -5.778 -2.286 -10.145 11.896 Atomic orbital electron populations 1.22049 0.94154 1.02475 1.03557 1.21583 0.95814 0.78074 1.03366 1.48552 1.36166 1.09884 1.21801 1.22434 0.95752 0.95155 0.96210 1.20404 1.07311 0.95077 1.00146 1.20538 0.97141 0.95286 0.96874 1.21174 0.91860 0.92054 0.92907 1.44353 1.54100 1.04617 1.29128 1.18620 0.96597 1.25953 0.96935 0.90336 1.25452 0.96746 0.97881 0.96151 1.69896 1.34792 1.24483 1.24999 0.87055 0.89239 0.78314 0.75436 1.21587 1.23356 1.19411 1.21044 0.93855 0.84784 0.93760 1.22841 0.99920 0.95289 0.99276 1.22435 0.99050 0.97443 0.97137 1.22241 0.97489 0.98241 0.97501 1.22547 0.95990 0.97132 1.01638 1.23765 0.96266 0.97154 0.96749 1.77167 1.24256 0.97196 1.14140 0.91241 0.91016 0.92080 0.90253 0.88868 0.81184 0.92202 0.90884 0.94725 0.93035 0.92951 0.93117 0.90366 0.93362 0.92749 0.92775 0.93388 0.91656 0.93901 0.90214 0.80493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 10.10 37.16 0.38 -1.26 16 2 C 0.13 1.43 7.23 -4.04 -0.03 1.40 16 3 N -0.38 -5.73 3.68 -61.36 -0.23 -5.95 16 4 C 0.05 0.81 11.36 -17.22 -0.20 0.61 16 5 C -0.22 -3.76 5.35 -105.06 -0.56 -4.32 16 6 C -0.06 -1.07 6.02 -27.89 -0.17 -1.24 16 7 C 0.15 3.10 4.50 -4.04 -0.02 3.08 16 8 N -0.60 -13.56 2.02 -164.38 -0.33 -13.89 16 9 C -0.25 -6.64 8.19 -15.06 -0.12 -6.77 16 10 H 0.08 2.25 7.09 -52.49 -0.37 1.88 16 11 C 0.04 1.05 5.27 -17.43 -0.09 0.96 16 12 N -0.90 -26.65 13.97 55.49 0.78 -25.87 16 13 Si 0.87 22.01 25.19 -169.99 -4.28 17.73 16 14 H -0.29 -7.17 6.65 56.52 0.38 -6.80 16 15 H -0.31 -7.94 7.11 56.52 0.40 -7.54 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.17 3.35 3.42 -66.81 -0.23 3.12 16 18 C -0.13 -2.38 6.43 -25.03 -0.16 -2.54 16 19 C -0.12 -1.90 6.91 -24.69 -0.17 -2.07 16 20 C -0.12 -1.96 6.83 -25.07 -0.17 -2.13 16 21 C -0.13 -2.54 6.25 -25.61 -0.16 -2.70 16 22 C 0.05 0.75 11.96 -17.37 -0.21 0.54 16 23 N -0.31 -5.02 12.42 30.63 0.38 -4.64 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.17 2.55 8.06 -52.49 -0.42 2.13 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.03 0.69 7.91 -51.93 -0.41 0.28 16 33 H 0.05 1.22 3.44 -51.93 -0.18 1.04 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.05 0.92 7.81 -51.93 -0.41 0.51 16 36 H 0.08 1.60 6.65 -51.93 -0.35 1.25 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.77 7.16 -51.93 -0.37 1.40 16 44 H 0.18 2.34 8.06 -52.48 -0.42 1.91 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -30.49 348.22 -7.93 -38.43 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.58 Total: 2.28 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -1.91 Total: -13.32 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.60 Total: -50.36 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.28 Total: 17.73 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.49 -7.93 -38.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284829600.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.978 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds