Wall clock time and date at job start Mon Mar 30 2020 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47467 * 2 1 4 4 C 1.34950 * 126.03705 * 125.25429 * 3 2 1 5 5 C 1.35322 * 107.74744 * 180.14822 * 4 3 2 6 6 C 1.50690 * 126.04310 * 179.87475 * 5 4 3 7 7 C 1.53004 * 109.47115 * 269.71933 * 6 5 4 8 8 N 1.46504 * 109.46813 * 179.97438 * 7 6 5 9 9 C 1.36932 * 120.00287 * 270.00110 * 8 7 6 10 10 H 1.07996 * 120.00490 * 142.00950 * 9 8 7 11 11 C 1.38818 * 119.99879 * 322.00334 * 9 8 7 12 12 N 1.31620 * 120.00103 * 156.10167 * 11 9 8 13 13 Si 1.86801 * 119.99815 * 336.10330 * 11 9 8 14 14 H 1.48495 * 109.46801 * 95.29108 * 13 11 9 15 15 H 1.48502 * 109.46967 * 215.28916 * 13 11 9 16 16 H 1.48496 * 109.47166 * 335.28904 * 13 11 9 17 17 C 1.46507 * 119.99890 * 90.00134 * 8 7 6 18 18 C 1.54269 * 110.03294 * 242.57657 * 17 8 7 19 19 C 1.54962 * 104.16013 * 217.13540 * 18 17 8 20 20 C 1.54896 * 102.77816 * 37.88655 * 19 18 17 21 21 C 1.53876 * 110.03199 * 125.35890 * 17 8 7 22 22 C 1.39869 * 107.91417 * 359.61650 * 5 4 3 23 23 N 1.30836 * 108.20709 * 0.23483 * 22 5 4 24 24 H 1.09001 * 109.46469 * 60.00095 * 1 2 3 25 25 H 1.08998 * 109.47046 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46955 * 300.00298 * 1 2 3 27 27 H 1.09006 * 109.47497 * 239.99768 * 2 1 3 28 28 H 1.09002 * 109.47176 * 120.00144 * 2 1 3 29 29 H 1.08000 * 126.12947 * 0.02562 * 4 3 2 30 30 H 1.09001 * 109.47111 * 149.71943 * 6 5 4 31 31 H 1.09002 * 109.47365 * 29.71639 * 6 5 4 32 32 H 1.08997 * 109.47154 * 299.99775 * 7 6 5 33 33 H 1.08991 * 109.47024 * 60.00122 * 7 6 5 34 34 H 0.96998 * 119.99707 * 180.02562 * 12 11 9 35 35 H 1.09004 * 110.01357 * 3.96429 * 17 8 7 36 36 H 1.08998 * 110.48228 * 335.78560 * 18 17 8 37 37 H 1.09004 * 110.48355 * 98.42383 * 18 17 8 38 38 H 1.08998 * 110.72097 * 279.57829 * 19 18 17 39 39 H 1.09000 * 110.92292 * 156.29375 * 19 18 17 40 40 H 1.08993 * 110.48361 * 203.40606 * 20 19 18 41 41 H 1.09000 * 110.59246 * 80.81450 * 20 19 18 42 42 H 1.09005 * 110.02786 * 238.56910 * 21 17 8 43 43 H 1.09002 * 110.03292 * 0.02562 * 21 17 8 44 44 H 1.08008 * 125.89436 * 180.21972 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8769 1.9197 0.8911 5 6 3.0716 3.2136 0.5463 6 6 3.9549 4.1998 1.2660 7 6 3.1398 4.9277 2.3369 8 7 3.9988 5.8860 3.0370 9 6 4.6901 5.4975 4.1533 10 1 5.6915 5.8644 4.3232 11 6 4.1038 4.6321 5.0667 12 7 4.8589 3.8948 5.8531 13 14 2.2429 4.5140 5.1796 14 1 1.7675 3.3805 4.3464 15 1 1.8460 4.2901 6.5930 16 1 1.6361 5.7775 4.6893 17 6 4.1180 7.2600 2.5428 18 6 5.5752 7.5467 2.1251 19 6 5.8091 9.0181 2.5513 20 6 5.0397 9.1129 3.8923 21 6 3.7774 8.2555 3.6656 22 6 2.3127 3.4723 -0.5998 23 7 1.6810 2.3746 -0.9282 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.3265 1.4099 1.7304 30 1 4.3469 4.9247 0.5525 31 1 4.7826 3.6698 1.7373 32 1 2.3121 5.4577 1.8657 33 1 2.7479 4.2028 3.0503 34 1 4.4491 3.2898 6.4911 35 1 3.4500 7.4107 1.6947 36 1 6.2607 6.8834 2.6524 37 1 5.6913 7.4379 1.0467 38 1 5.3890 9.7041 1.8157 39 1 6.8706 9.2162 2.7001 40 1 4.7659 10.1467 4.1027 41 1 5.6374 8.7039 4.7069 42 1 2.9447 8.8899 3.3621 43 1 3.5239 7.7163 4.5784 44 1 2.2575 4.4155 -1.1232 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284829600.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:10 Heat of formation + Delta-G solvation = 68.985267 kcal Electronic energy + Delta-G solvation = -22099.725426 eV Core-core repulsion = 19053.224356 eV Total energy + Delta-G solvation = -3046.501070 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.10669 -39.45969 -36.59354 -35.39641 -33.84118 -32.48832 -31.07681 -29.31185 -28.94904 -28.12982 -25.47105 -24.57351 -23.32236 -21.60598 -21.37021 -20.80802 -20.54572 -18.27963 -17.87537 -17.07420 -16.89417 -16.34573 -15.89217 -15.31920 -15.12180 -15.03428 -14.78988 -14.66898 -14.00537 -13.91820 -13.82861 -13.76281 -13.29556 -12.99753 -12.84055 -12.75557 -12.55081 -12.37724 -12.13298 -12.01437 -11.82702 -11.71702 -11.67834 -11.45587 -11.23633 -11.19682 -11.10001 -10.50393 -10.32570 -9.30935 -8.54232 -8.12033 -5.44348 0.95235 1.30720 1.41060 1.51452 1.66423 1.88610 2.47193 3.13166 3.41590 3.61308 3.98326 4.01321 4.06030 4.06791 4.18191 4.26968 4.32737 4.39035 4.55246 4.68120 4.74935 4.76609 4.77973 4.81923 4.88750 4.91493 4.98066 4.98311 5.01474 5.03281 5.18061 5.23620 5.27552 5.34885 5.45863 5.50213 5.61564 5.67423 5.71739 5.81297 6.07220 6.15239 6.32996 6.76624 7.13647 7.78661 8.20703 9.08487 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.005382 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.737123 B = 5201.508913 C = 6134.852585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.120 3.880 3 N -0.377 5.377 4 C 0.043 3.957 5 C -0.240 4.240 6 C -0.038 4.038 7 C 0.144 3.856 8 N -0.610 5.610 9 C -0.222 4.222 10 H 0.045 0.955 11 C -0.014 4.014 12 N -0.948 5.948 13 Si 0.926 3.074 14 H -0.282 1.282 15 H -0.317 1.317 16 H -0.265 1.265 17 C 0.163 3.837 18 C -0.130 4.130 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.135 4.135 22 C 0.047 3.953 23 N -0.321 5.321 24 H 0.056 0.944 25 H 0.102 0.898 26 H 0.044 0.956 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.177 0.823 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.026 0.974 34 H 0.258 0.742 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 -0.705 -12.658 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.001 3.999 3 N -0.161 5.161 4 C -0.103 4.103 5 C -0.252 4.252 6 C -0.079 4.079 7 C 0.019 3.981 8 N -0.332 5.332 9 C -0.352 4.352 10 H 0.062 0.938 11 C -0.210 4.210 12 N -0.593 5.593 13 Si 0.757 3.243 14 H -0.210 1.210 15 H -0.246 1.246 16 H -0.189 1.189 17 C 0.057 3.943 18 C -0.169 4.169 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.175 4.175 22 C -0.138 4.138 23 N -0.143 5.143 24 H 0.075 0.925 25 H 0.121 0.879 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.131 0.869 29 H 0.194 0.806 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.547 -1.522 -13.367 14.962 hybrid contribution -0.100 -0.153 1.507 1.518 sum -6.647 -1.675 -11.860 13.699 Atomic orbital electron populations 1.22006 0.93458 1.04048 1.02034 1.22019 0.96415 0.76239 1.05275 1.48916 1.35315 1.10995 1.20841 1.22635 0.95834 0.95353 0.96513 1.20328 1.08358 0.95291 1.01221 1.20204 0.96026 0.95429 0.96250 1.21203 0.92426 0.91601 0.92873 1.44474 1.53780 1.06581 1.28348 1.18411 0.95277 1.23967 0.97519 0.93755 1.25892 0.99815 0.98615 0.96660 1.70002 1.36153 1.26376 1.26787 0.86116 0.85227 0.78437 0.74516 1.20988 1.24632 1.18943 1.21341 0.95454 0.82914 0.94579 1.22740 0.97776 0.96370 1.00048 1.22406 0.99773 0.96097 0.96673 1.22220 0.96298 0.99149 0.97654 1.22533 0.97908 0.97422 0.99591 1.24116 0.95447 0.98050 0.96210 1.77132 1.24695 0.97673 1.14812 0.92505 0.87932 0.93712 0.88491 0.86869 0.80586 0.90800 0.93703 0.92892 0.95584 0.93273 0.90675 0.94019 0.91315 0.89795 0.91765 0.90637 0.94269 0.91478 0.94199 0.78042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 10.10 71.98 0.73 -2.08 16 2 C 0.12 2.31 7.23 86.38 0.62 2.93 16 3 N -0.38 -10.74 3.68 -348.05 -1.28 -12.03 16 4 C 0.04 1.36 11.36 83.54 0.95 2.31 16 5 C -0.24 -8.00 5.35 -20.15 -0.11 -8.10 16 6 C -0.04 -1.40 6.02 29.85 0.18 -1.22 16 7 C 0.14 5.99 4.50 86.38 0.39 6.38 16 8 N -0.61 -27.42 2.02 -673.99 -1.36 -28.78 16 9 C -0.22 -12.04 8.19 84.04 0.69 -11.35 16 10 H 0.04 2.70 7.09 -2.91 -0.02 2.68 16 11 C -0.01 -0.81 5.27 84.86 0.45 -0.36 16 12 N -0.95 -58.49 13.97 21.65 0.30 -58.19 16 13 Si 0.93 46.78 25.19 68.60 1.73 48.51 16 14 H -0.28 -13.82 6.65 99.48 0.66 -13.16 16 15 H -0.32 -16.46 7.11 99.48 0.71 -15.75 16 16 H -0.26 -12.99 7.11 99.48 0.71 -12.29 16 17 C 0.16 6.04 3.42 45.72 0.16 6.20 16 18 C -0.13 -4.40 6.43 31.70 0.20 -4.20 16 19 C -0.11 -3.12 6.91 31.91 0.22 -2.90 16 20 C -0.12 -3.67 6.83 31.67 0.22 -3.46 16 21 C -0.14 -4.94 6.25 31.32 0.20 -4.75 16 22 C 0.05 1.41 11.96 85.24 1.02 2.43 16 23 N -0.32 -9.95 12.42 -57.02 -0.71 -10.66 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.11 1.72 8.07 -2.39 -0.02 1.70 16 29 H 0.18 5.22 8.06 -2.91 -0.02 5.20 16 30 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 2.00 7.91 -2.39 -0.02 1.98 16 33 H 0.03 1.23 3.44 -2.39 -0.01 1.22 16 34 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.08 2.44 7.81 -2.38 -0.02 2.43 16 36 H 0.04 1.71 6.65 -2.39 -0.02 1.70 16 37 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.04 1.77 7.16 -2.39 -0.02 1.75 16 44 H 0.20 4.73 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -68.07 348.22 5.49 -62.58 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.91 Total: 16.75 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 5.91 Total: -18.18 kcal Atomic # 7 Polarization: -106.61 SS G_CDS: -3.05 Total: -109.66 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.73 Total: 48.51 kcal Total: -68.07 5.49 -62.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284829600.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.561 kcal (2) G-P(sol) polarization free energy of solvation -68.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds