Wall clock time and date at job start Mon Mar 30 2020 01:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 120.00137 * 2 1 4 4 N 1.46901 * 109.46939 * 124.13545 * 3 2 1 5 5 C 1.46902 * 110.99867 * 299.16222 * 4 3 2 6 6 C 1.50706 * 109.46922 * 288.12918 * 5 4 3 7 7 H 1.07995 * 120.00222 * 354.71855 * 6 5 4 8 8 C 1.37877 * 119.99439 * 174.71500 * 6 5 4 9 9 N 1.31515 * 120.00405 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99755 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46843 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47258 * 119.99924 * 10 8 6 13 13 H 1.48496 * 109.47247 * 240.00250 * 10 8 6 14 14 C 1.46894 * 111.00593 * 63.11924 * 4 3 2 15 15 C 1.52996 * 109.47156 * 66.04322 * 14 4 3 16 16 C 1.53009 * 109.47286 * 180.02562 * 15 14 4 17 17 C 1.52998 * 109.47365 * 180.02562 * 16 15 14 18 18 C 1.52994 * 109.47108 * 180.02562 * 17 16 15 19 19 N 1.46503 * 109.47110 * 179.97438 * 18 17 16 20 20 C 1.34948 * 126.03591 * 124.99605 * 19 18 17 21 21 C 1.35314 * 107.74376 * 179.97438 * 20 19 18 22 22 C 1.39871 * 107.92312 * 0.02562 * 21 20 19 23 23 N 1.30837 * 108.19675 * 359.74020 * 22 21 20 24 24 H 1.07998 * 120.00277 * 180.02562 * 1 2 3 25 25 H 1.08006 * 119.99735 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99251 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47511 * 4.12975 * 3 2 1 28 28 H 1.09004 * 109.47208 * 244.12867 * 3 2 1 29 29 H 1.09005 * 109.46955 * 48.12667 * 5 4 3 30 30 H 1.08991 * 109.47221 * 168.13030 * 5 4 3 31 31 H 0.96997 * 119.99703 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.46840 * 306.04690 * 14 4 3 33 33 H 1.08998 * 109.47251 * 186.05030 * 14 4 3 34 34 H 1.08999 * 109.46945 * 60.00432 * 15 14 4 35 35 H 1.08998 * 109.47619 * 300.00482 * 15 14 4 36 36 H 1.08999 * 109.46993 * 60.00195 * 16 15 14 37 37 H 1.08998 * 109.46968 * 300.00614 * 16 15 14 38 38 H 1.09006 * 109.47128 * 59.99538 * 17 16 15 39 39 H 1.09006 * 109.46986 * 299.99892 * 17 16 15 40 40 H 1.08999 * 109.47278 * 59.99803 * 18 17 16 41 41 H 1.09006 * 109.46952 * 299.99721 * 18 17 16 42 42 H 1.08004 * 126.12601 * 0.02562 * 20 19 18 43 43 H 1.08004 * 126.03471 * 180.02562 * 21 20 19 44 44 H 1.07997 * 125.89631 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9814 1.3404 1.1464 5 6 2.2450 1.2406 2.4136 6 6 1.5055 2.5290 2.6677 7 1 1.6425 3.3701 2.0043 8 6 0.6540 2.6337 3.7470 9 7 0.4868 1.6092 4.5546 10 14 -0.2632 4.2303 4.0616 11 1 0.0958 5.2216 3.0158 12 1 -1.7259 3.9768 4.0229 13 1 0.1119 4.7620 5.3964 14 6 3.9953 0.2827 1.0420 15 6 4.9016 0.5616 -0.1587 16 6 5.9573 -0.5405 -0.2678 17 6 6.8640 -0.2612 -1.4681 18 6 7.9192 -1.3636 -1.5776 19 7 8.7871 -1.0965 -2.7273 20 6 10.1327 -0.9973 -2.7002 21 6 10.5531 -0.7459 -3.9615 22 6 9.4259 -0.6888 -4.7876 23 7 8.3672 -0.9040 -4.0497 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3576 2.1322 0.0740 28 1 2.6335 1.3955 -0.9247 29 1 1.5323 0.4179 2.3559 30 1 2.9461 1.0575 3.2278 31 1 -0.1120 1.6830 5.3141 32 1 3.5029 -0.6807 0.9094 33 1 4.5942 0.2623 1.9525 34 1 5.3940 1.5250 -0.0261 35 1 4.3027 0.5820 -1.0691 36 1 5.4646 -1.5037 -0.4006 37 1 6.5563 -0.5612 0.6426 38 1 7.3567 0.7020 -1.3350 39 1 6.2652 -0.2402 -2.3787 40 1 7.4263 -2.3265 -1.7109 41 1 8.5181 -1.3850 -0.6670 42 1 10.7613 -1.1010 -1.8281 43 1 11.5781 -0.6128 -4.2749 44 1 9.4293 -0.5033 -5.8516 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292256579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:59 Heat of formation + Delta-G solvation = 87.765168 kcal Electronic energy + Delta-G solvation = -20634.216403 eV Core-core repulsion = 17588.529690 eV Total energy + Delta-G solvation = -3045.686713 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29101 -37.79286 -35.93775 -33.26696 -32.78913 -31.74823 -30.35820 -29.26442 -27.00830 -25.86645 -24.33402 -22.34520 -21.35338 -20.83768 -20.83127 -20.54145 -18.58658 -17.37286 -16.18647 -16.10146 -15.40725 -14.96899 -14.75094 -14.42156 -14.33379 -14.12318 -13.67150 -13.34248 -13.19756 -12.94100 -12.57657 -12.25276 -12.09996 -11.92338 -11.30422 -11.25599 -11.06988 -10.97948 -10.80050 -10.74242 -10.64715 -10.48566 -10.39775 -10.22220 -9.85066 -9.61571 -9.16606 -8.79533 -8.68353 -8.38705 -7.18437 -5.98752 -3.99342 1.71020 2.32255 2.65401 2.91565 3.32014 3.39565 3.44598 4.22021 4.44745 4.57129 4.63750 4.81686 4.95144 5.00973 5.12032 5.25157 5.34121 5.36566 5.53016 5.54495 5.55762 5.64196 5.77038 5.79292 5.83128 5.87421 6.04832 6.09319 6.15520 6.26682 6.42819 6.45077 6.55228 6.58937 6.74138 6.81134 7.18926 7.29710 7.37591 7.48104 7.51424 7.86397 8.14541 8.24013 8.60067 9.09193 9.64492 11.11826 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031399 B = 0.002592 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.541697 B =10800.095345 C =11091.960911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.180 4.180 3 C 0.088 3.912 4 N -0.531 5.531 5 C 0.189 3.811 6 C -0.500 4.500 7 H 0.062 0.938 8 C 0.054 3.946 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.053 3.947 15 C -0.113 4.113 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.131 3.869 19 N -0.369 5.369 20 C 0.051 3.949 21 C -0.280 4.280 22 C 0.039 3.961 23 N -0.293 5.293 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.005 0.995 30 H 0.021 0.979 31 H 0.259 0.741 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.172 0.828 43 H 0.145 0.855 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.415 -7.164 -13.793 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.200 4.200 3 C -0.040 4.040 4 N -0.254 5.254 5 C 0.064 3.936 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.076 4.076 15 C -0.151 4.151 16 C -0.154 4.154 17 C -0.167 4.167 18 C 0.010 3.990 19 N -0.151 5.151 20 C -0.095 4.095 21 C -0.309 4.309 22 C -0.147 4.147 23 N -0.115 5.115 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.023 0.977 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.189 0.811 43 H 0.163 0.837 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 15.213 -6.881 -13.465 21.450 hybrid contribution -0.036 -0.034 0.452 0.455 sum 15.177 -6.914 -13.013 21.154 Atomic orbital electron populations 1.23699 0.96077 1.01093 1.00969 1.23557 0.96674 0.99898 0.99850 1.21271 0.94672 0.94247 0.93780 1.62398 1.14745 1.44108 1.04129 1.19771 0.92226 0.97147 0.84440 1.21183 1.23923 0.98395 1.10418 0.91993 1.24975 0.96948 0.96506 0.96208 1.69970 1.37954 1.30078 1.15912 0.86501 0.79417 0.83760 0.78114 1.19682 1.21174 1.21100 1.22057 0.94394 0.93553 0.97605 1.21576 0.96410 0.98286 0.98853 1.21506 0.97147 0.99743 0.96983 1.21865 0.96705 0.97769 1.00311 1.21880 0.92456 1.00280 0.84379 1.48869 1.04969 1.54235 1.07031 1.22608 0.85208 1.01686 1.00035 1.21509 1.00226 1.16579 0.92624 1.23897 0.90285 1.00194 1.00312 1.77366 1.23624 1.22841 0.87678 0.89764 0.88490 0.88686 0.89969 0.91958 0.97688 0.96097 0.93124 0.95752 0.91706 0.91373 0.92089 0.91896 0.91746 0.91362 0.90467 0.89749 0.88596 0.81072 0.83721 0.80202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 14.32 29.01 0.42 -2.85 16 2 C -0.18 -3.32 7.45 -36.03 -0.27 -3.59 16 3 C 0.09 1.71 5.46 -4.98 -0.03 1.68 16 4 N -0.53 -11.33 4.66 -237.52 -1.11 -12.43 16 5 C 0.19 4.91 4.59 -4.97 -0.02 4.89 16 6 C -0.50 -14.08 8.51 -34.44 -0.29 -14.38 16 7 H 0.06 1.75 7.67 -52.49 -0.40 1.34 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 10 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.05 0.91 4.79 -3.83 -0.02 0.89 16 15 C -0.11 -1.56 5.14 -26.73 -0.14 -1.70 16 16 C -0.12 -1.21 5.21 -26.73 -0.14 -1.35 16 17 C -0.13 -1.27 5.40 -26.73 -0.14 -1.41 16 18 C 0.13 1.10 6.51 -4.04 -0.03 1.07 16 19 N -0.37 -3.81 3.68 -61.36 -0.23 -4.04 16 20 C 0.05 0.43 11.45 -17.22 -0.20 0.24 16 21 C -0.28 -2.40 10.80 -40.01 -0.43 -2.83 16 22 C 0.04 0.38 12.03 -17.36 -0.21 0.17 16 23 N -0.29 -3.58 12.42 30.62 0.38 -3.20 16 24 H 0.08 1.36 8.06 -52.49 -0.42 0.94 16 25 H 0.10 1.79 7.84 -52.48 -0.41 1.38 16 26 H 0.10 1.65 6.77 -52.48 -0.36 1.30 16 27 H 0.08 1.74 7.02 -51.93 -0.36 1.38 16 28 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 29 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16 30 H 0.02 0.58 7.81 -51.93 -0.41 0.18 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 32 H 0.02 0.42 6.29 -51.93 -0.33 0.09 16 33 H 0.06 1.15 7.86 -51.93 -0.41 0.74 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.85 6.49 -51.93 -0.34 0.52 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.57 8.07 -51.93 -0.42 0.15 16 42 H 0.17 0.86 8.06 -52.48 -0.42 0.44 16 43 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 44 H 0.18 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 360.32 15.07 5.43 5.43 Total: -1.00 -32.26 360.32 -8.88 -41.13 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.47 Total: 0.13 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -1.60 Total: -17.71 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.21 Total: -45.75 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.26 -8.88 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292256579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.897 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds