Wall clock time and date at job start Mon Mar 30 2020 01:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 120.00137 * 2 1 4 4 N 1.46901 * 109.46939 * 124.13545 * 3 2 1 5 5 C 1.46902 * 110.99867 * 299.16222 * 4 3 2 6 6 C 1.50706 * 109.46922 * 288.12918 * 5 4 3 7 7 H 1.07995 * 120.00222 * 354.71855 * 6 5 4 8 8 C 1.37877 * 119.99439 * 174.71500 * 6 5 4 9 9 N 1.31515 * 120.00405 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99755 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46843 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47258 * 119.99924 * 10 8 6 13 13 H 1.48496 * 109.47247 * 240.00250 * 10 8 6 14 14 C 1.46894 * 111.00593 * 63.11924 * 4 3 2 15 15 C 1.52996 * 109.47156 * 66.04322 * 14 4 3 16 16 C 1.53009 * 109.47286 * 180.02562 * 15 14 4 17 17 C 1.52998 * 109.47365 * 180.02562 * 16 15 14 18 18 C 1.52994 * 109.47108 * 180.02562 * 17 16 15 19 19 N 1.46503 * 109.47110 * 179.97438 * 18 17 16 20 20 C 1.34948 * 126.03591 * 124.99605 * 19 18 17 21 21 C 1.35314 * 107.74376 * 179.97438 * 20 19 18 22 22 C 1.39871 * 107.92312 * 0.02562 * 21 20 19 23 23 N 1.30837 * 108.19675 * 359.74020 * 22 21 20 24 24 H 1.07998 * 120.00277 * 180.02562 * 1 2 3 25 25 H 1.08006 * 119.99735 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99251 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47511 * 4.12975 * 3 2 1 28 28 H 1.09004 * 109.47208 * 244.12867 * 3 2 1 29 29 H 1.09005 * 109.46955 * 48.12667 * 5 4 3 30 30 H 1.08991 * 109.47221 * 168.13030 * 5 4 3 31 31 H 0.96997 * 119.99703 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.46840 * 306.04690 * 14 4 3 33 33 H 1.08998 * 109.47251 * 186.05030 * 14 4 3 34 34 H 1.08999 * 109.46945 * 60.00432 * 15 14 4 35 35 H 1.08998 * 109.47619 * 300.00482 * 15 14 4 36 36 H 1.08999 * 109.46993 * 60.00195 * 16 15 14 37 37 H 1.08998 * 109.46968 * 300.00614 * 16 15 14 38 38 H 1.09006 * 109.47128 * 59.99538 * 17 16 15 39 39 H 1.09006 * 109.46986 * 299.99892 * 17 16 15 40 40 H 1.08999 * 109.47278 * 59.99803 * 18 17 16 41 41 H 1.09006 * 109.46952 * 299.99721 * 18 17 16 42 42 H 1.08004 * 126.12601 * 0.02562 * 20 19 18 43 43 H 1.08004 * 126.03471 * 180.02562 * 21 20 19 44 44 H 1.07997 * 125.89631 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9814 1.3404 1.1464 5 6 2.2450 1.2406 2.4136 6 6 1.5055 2.5290 2.6677 7 1 1.6425 3.3701 2.0043 8 6 0.6540 2.6337 3.7470 9 7 0.4868 1.6092 4.5546 10 14 -0.2632 4.2303 4.0616 11 1 0.0958 5.2216 3.0158 12 1 -1.7259 3.9768 4.0229 13 1 0.1119 4.7620 5.3964 14 6 3.9953 0.2827 1.0420 15 6 4.9016 0.5616 -0.1587 16 6 5.9573 -0.5405 -0.2678 17 6 6.8640 -0.2612 -1.4681 18 6 7.9192 -1.3636 -1.5776 19 7 8.7871 -1.0965 -2.7273 20 6 10.1327 -0.9973 -2.7002 21 6 10.5531 -0.7459 -3.9615 22 6 9.4259 -0.6888 -4.7876 23 7 8.3672 -0.9040 -4.0497 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3576 2.1322 0.0740 28 1 2.6335 1.3955 -0.9247 29 1 1.5323 0.4179 2.3559 30 1 2.9461 1.0575 3.2278 31 1 -0.1120 1.6830 5.3141 32 1 3.5029 -0.6807 0.9094 33 1 4.5942 0.2623 1.9525 34 1 5.3940 1.5250 -0.0261 35 1 4.3027 0.5820 -1.0691 36 1 5.4646 -1.5037 -0.4006 37 1 6.5563 -0.5612 0.6426 38 1 7.3567 0.7020 -1.3350 39 1 6.2652 -0.2402 -2.3787 40 1 7.4263 -2.3265 -1.7109 41 1 8.5181 -1.3850 -0.6670 42 1 10.7613 -1.1010 -1.8281 43 1 11.5781 -0.6128 -4.2749 44 1 9.4293 -0.5033 -5.8516 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292256579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:59 Heat of formation + Delta-G solvation = 68.597399 kcal Electronic energy + Delta-G solvation = -20635.047579 eV Core-core repulsion = 17588.529690 eV Total energy + Delta-G solvation = -3046.517890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.95316 -39.33747 -36.89055 -34.87421 -34.31568 -33.13626 -31.15884 -30.37626 -28.76671 -27.15770 -25.81008 -23.65107 -22.41123 -22.15979 -21.74284 -21.31577 -20.10097 -18.35188 -18.02292 -17.18030 -16.72325 -16.42803 -16.09718 -15.70058 -15.50519 -15.23818 -14.76786 -14.60625 -14.19380 -14.06781 -13.79667 -13.54605 -13.38015 -13.03976 -12.94140 -12.72219 -12.57458 -12.31056 -12.25858 -12.10195 -12.05576 -11.94482 -11.74993 -11.48810 -11.34311 -11.13757 -10.59170 -10.33527 -10.18012 -9.46092 -8.92279 -8.16942 -6.25979 1.05027 1.39410 1.40482 1.43901 1.53651 1.70388 2.00076 2.41121 3.15191 3.34040 3.64387 3.91780 4.04179 4.05900 4.08171 4.15417 4.23026 4.32817 4.42159 4.50027 4.53528 4.60377 4.74955 4.81870 4.88251 4.91894 4.94234 4.98287 5.02768 5.11174 5.19235 5.21013 5.24280 5.38191 5.41767 5.49274 5.68894 5.71653 5.80743 5.90242 6.13203 6.21692 6.41172 6.70263 6.83172 6.90840 7.43154 8.93296 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031399 B = 0.002592 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.541697 B =10800.095345 C =11091.960911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.188 4.188 3 C 0.091 3.909 4 N -0.542 5.542 5 C 0.206 3.794 6 C -0.515 4.515 7 H 0.056 0.944 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.053 3.947 15 C -0.103 4.103 16 C -0.105 4.105 17 C -0.117 4.117 18 C 0.129 3.871 19 N -0.381 5.381 20 C 0.051 3.949 21 C -0.291 4.291 22 C 0.030 3.970 23 N -0.343 5.343 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.059 0.941 28 H 0.088 0.912 29 H -0.019 1.019 30 H -0.006 1.006 31 H 0.262 0.738 32 H 0.028 0.972 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.206 0.794 43 H 0.166 0.834 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.594 -7.249 -14.251 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.208 4.208 3 C -0.037 4.037 4 N -0.264 5.264 5 C 0.080 3.920 6 C -0.553 4.553 7 H 0.075 0.925 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.205 1.205 14 C -0.075 4.075 15 C -0.141 4.141 16 C -0.143 4.143 17 C -0.155 4.155 18 C 0.009 3.991 19 N -0.163 5.163 20 C -0.096 4.096 21 C -0.320 4.320 22 C -0.156 4.156 23 N -0.165 5.165 24 H 0.123 0.877 25 H 0.106 0.894 26 H 0.127 0.873 27 H 0.077 0.923 28 H 0.106 0.894 29 H -0.001 1.001 30 H 0.012 0.988 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.143 0.857 42 H 0.223 0.777 43 H 0.184 0.816 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 16.406 -6.967 -13.949 22.633 hybrid contribution -0.354 -0.027 0.564 0.667 sum 16.051 -6.995 -13.385 22.039 Atomic orbital electron populations 1.23861 0.96179 1.01720 1.00331 1.23589 0.96914 0.99861 1.00387 1.21236 0.94455 0.94083 0.93939 1.62302 1.15117 1.46162 1.02820 1.19391 0.91162 0.95471 0.85999 1.21450 1.24379 0.99016 1.10485 0.92537 1.25826 0.97785 0.99945 0.95889 1.70085 1.38704 1.32156 1.16448 0.85438 0.78111 0.79575 0.78133 1.18975 1.20486 1.20462 1.22143 0.93737 0.92572 0.99033 1.21470 0.96510 0.99258 0.96830 1.21399 0.96413 0.98632 0.97895 1.21682 0.96738 0.98170 0.98913 1.21977 0.92516 0.99486 0.85108 1.49030 1.05881 1.54651 1.06748 1.23252 0.84802 1.00241 1.01283 1.21882 1.00976 1.16464 0.92658 1.24391 0.90399 0.99333 1.01432 1.77300 1.25255 1.24909 0.89029 0.87680 0.89408 0.87336 0.92281 0.89388 1.00077 0.98784 0.92875 0.95383 0.92364 0.92150 0.92204 0.91069 0.90429 0.92148 0.92433 0.89444 0.85664 0.77705 0.81605 0.78311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.54 14.32 67.78 0.97 -5.57 16 2 C -0.19 -6.84 7.45 25.64 0.19 -6.65 16 3 C 0.09 3.50 5.46 85.55 0.47 3.97 16 4 N -0.54 -23.29 4.66 -905.39 -4.22 -27.51 16 5 C 0.21 10.98 4.59 85.56 0.39 11.37 16 6 C -0.51 -29.45 8.51 25.60 0.22 -29.23 16 7 H 0.06 3.23 7.67 -2.91 -0.02 3.20 16 8 C 0.00 0.19 5.46 84.65 0.46 0.65 16 9 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 10 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 C 0.05 1.83 4.79 86.30 0.41 2.24 16 15 C -0.10 -2.73 5.14 30.60 0.16 -2.57 16 16 C -0.10 -2.01 5.21 30.60 0.16 -1.85 16 17 C -0.12 -2.16 5.40 30.59 0.17 -1.99 16 18 C 0.13 1.91 6.51 86.38 0.56 2.47 16 19 N -0.38 -7.29 3.68 -348.06 -1.28 -8.57 16 20 C 0.05 0.74 11.45 83.54 0.96 1.69 16 21 C -0.29 -4.45 10.80 21.99 0.24 -4.21 16 22 C 0.03 0.56 12.03 85.24 1.03 1.58 16 23 N -0.34 -8.19 12.42 -57.02 -0.71 -8.90 16 24 H 0.10 3.27 8.06 -2.91 -0.02 3.25 16 25 H 0.09 3.27 7.84 -2.91 -0.02 3.25 16 26 H 0.11 3.65 6.77 -2.91 -0.02 3.63 16 27 H 0.06 2.54 7.02 -2.39 -0.02 2.52 16 28 H 0.09 2.92 6.33 -2.38 -0.02 2.91 16 29 H -0.02 -1.06 6.75 -2.38 -0.02 -1.08 16 30 H -0.01 -0.34 7.81 -2.39 -0.02 -0.36 16 31 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.03 0.95 6.29 -2.39 -0.02 0.93 16 33 H 0.06 2.06 7.86 -2.39 -0.02 2.04 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.60 6.49 -2.39 -0.02 1.59 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.13 1.09 8.07 -2.38 -0.02 1.07 16 42 H 0.21 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 44 H 0.20 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -70.44 360.32 3.42 -67.01 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.94 Total: 15.28 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 6.38 Total: -28.10 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -5.92 Total: -101.04 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -70.44 3.42 -67.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292256579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.611 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds