Wall clock time and date at job start Mon Mar 30 2020 01:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47098 * 2 1 4 4 C 1.52995 * 109.47242 * 119.99907 * 2 1 3 5 5 C 1.52999 * 109.47150 * 174.99705 * 4 2 1 6 6 N 1.46905 * 109.46986 * 183.83736 * 5 4 2 7 7 C 1.46903 * 110.99527 * 160.26862 * 6 5 4 8 8 C 1.50690 * 109.47343 * 288.46034 * 7 6 5 9 9 H 1.08006 * 119.99768 * 355.94508 * 8 7 6 10 10 C 1.37878 * 120.00636 * 175.94574 * 8 7 6 11 11 N 1.31516 * 119.99428 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00467 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47257 * 59.99813 * 12 10 8 14 14 H 1.48497 * 109.46950 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47028 * 300.00210 * 12 10 8 16 16 C 1.46905 * 111.00004 * 284.21737 * 6 5 4 17 17 C 1.50699 * 109.46720 * 170.00014 * 16 6 5 18 18 C 1.38880 * 120.74872 * 269.97708 * 17 16 6 19 19 C 1.38021 * 119.33314 * 180.02562 * 18 17 16 20 20 N 1.31978 * 120.85371 * 359.97438 * 19 18 17 21 21 C 1.32402 * 121.61983 * 359.97438 * 20 19 18 22 22 N 1.39000 * 119.70361 * 180.02562 * 21 20 19 23 23 C 1.38295 * 120.74578 * 90.01003 * 17 16 6 24 24 H 1.09000 * 109.46463 * 299.99970 * 1 2 3 25 25 H 1.09000 * 109.46949 * 60.00028 * 1 2 3 26 26 H 1.09004 * 109.46992 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46845 * 239.99669 * 2 1 3 28 28 H 1.09010 * 109.47083 * 299.99949 * 3 2 1 29 29 H 1.08997 * 109.47543 * 60.00096 * 3 2 1 30 30 H 1.08998 * 109.47251 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47052 * 55.00229 * 4 2 1 32 32 H 1.08999 * 109.47204 * 295.00226 * 4 2 1 33 33 H 1.08999 * 109.47084 * 63.84096 * 5 4 2 34 34 H 1.08995 * 109.47137 * 303.83942 * 5 4 2 35 35 H 1.09003 * 109.47262 * 48.46590 * 7 6 5 36 36 H 1.09011 * 109.46412 * 168.46241 * 7 6 5 37 37 H 0.96995 * 120.00214 * 179.97438 * 11 10 8 38 38 H 1.08999 * 109.46566 * 50.00901 * 16 6 5 39 39 H 1.08996 * 109.47405 * 290.00692 * 16 6 5 40 40 H 1.08002 * 120.33889 * 0.02562 * 18 17 16 41 41 H 1.07998 * 119.57982 * 180.02562 * 19 18 17 42 42 H 0.97008 * 119.99779 * 359.97438 * 22 21 20 43 43 H 0.96999 * 120.00438 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.45287 * 359.94901 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1879 6 7 4.0469 -1.6034 2.3408 7 6 5.3965 -2.1291 2.0950 8 6 5.3262 -3.2372 1.0763 9 1 4.3681 -3.5669 0.7023 10 6 6.4848 -3.8303 0.6215 11 7 7.6515 -3.4291 1.0773 12 14 6.3977 -5.2034 -0.6418 13 1 5.7442 -4.6994 -1.8765 14 1 7.7709 -5.6680 -0.9635 15 1 5.6085 -6.3340 -0.0904 16 6 4.0119 -0.7957 3.5674 17 6 4.2745 -1.6802 4.7589 18 6 3.2275 -2.3046 5.4241 19 6 3.5013 -3.1081 6.5124 20 7 4.7417 -3.2889 6.9253 21 6 5.7667 -2.7120 6.3173 22 7 7.0571 -2.9303 6.7855 23 6 5.5635 -1.8878 5.2149 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9563 -0.8901 29 1 1.6768 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6055 -1.7198 1.2951 32 1 1.7517 -0.1583 2.1369 33 1 4.0023 0.1671 1.2107 34 1 3.8561 -1.3343 0.2660 35 1 6.0349 -1.3296 1.7189 36 1 5.8103 -2.5170 3.0260 37 1 8.4666 -3.8465 0.7578 38 1 3.0309 -0.3315 3.6687 39 1 4.7767 -0.0209 3.5143 40 1 2.2092 -2.1630 5.0933 41 1 2.6902 -3.5960 7.0324 42 1 7.2035 -3.5029 7.5548 43 1 7.8112 -2.5102 6.3432 44 1 6.4011 -1.4179 4.7210 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299299150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:13 Heat of formation + Delta-G solvation = 19.537073 kcal Electronic energy + Delta-G solvation = -21847.115525 eV Core-core repulsion = 18798.470220 eV Total energy + Delta-G solvation = -3048.645305 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.79550 -37.54965 -35.59838 -34.25377 -32.72735 -31.95644 -28.93230 -28.61674 -27.43347 -27.00857 -24.87785 -22.94138 -22.47091 -21.47268 -19.91662 -19.50382 -17.02794 -16.64659 -16.28856 -15.41367 -15.00821 -14.94457 -14.69421 -14.42886 -14.00937 -13.88104 -13.63046 -13.40849 -12.92123 -12.86928 -12.28213 -12.07184 -11.97026 -11.65490 -11.47197 -11.25374 -11.13814 -10.79631 -10.75341 -10.67977 -10.44682 -10.36130 -10.14742 -10.03203 -9.76808 -9.24880 -9.00701 -8.95448 -8.39331 -7.42047 -7.23967 -6.00869 -4.00548 1.76916 1.94838 3.33996 3.37808 3.41366 3.89146 4.34178 4.46237 4.88598 5.04576 5.11742 5.18915 5.22363 5.34842 5.38563 5.59202 5.67859 5.71803 5.73123 5.75802 5.90991 5.92866 6.00632 6.06252 6.07585 6.11664 6.21942 6.26729 6.30078 6.39788 6.45314 6.53275 6.75954 6.84176 6.96478 7.07893 7.31461 7.35663 7.63372 7.80802 7.83860 8.13194 8.20829 8.56212 8.65241 9.06735 9.62764 11.09800 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.009385 B = 0.007029 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.652474 B = 3982.570375 C = 6245.722262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.107 4.107 5 C 0.063 3.937 6 N -0.529 5.529 7 C 0.185 3.815 8 C -0.502 4.502 9 H 0.062 0.938 10 C 0.055 3.945 11 N -0.900 5.900 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.089 3.911 17 C 0.022 3.978 18 C -0.213 4.213 19 C 0.135 3.865 20 N -0.555 5.555 21 C 0.399 3.601 22 N -0.856 5.856 23 C -0.216 4.216 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.021 0.979 34 H 0.084 0.916 35 H -0.009 1.009 36 H 0.039 0.961 37 H 0.260 0.740 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.126 0.874 41 H 0.148 0.852 42 H 0.398 0.602 43 H 0.407 0.593 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.282 7.219 5.568 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.145 4.145 5 C -0.065 4.065 6 N -0.253 5.253 7 C 0.061 3.939 8 C -0.540 4.540 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.540 5.540 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.202 1.202 16 C -0.039 4.039 17 C 0.013 3.987 18 C -0.236 4.236 19 C -0.022 4.022 20 N -0.274 5.274 21 C 0.162 3.838 22 N -0.400 5.400 23 C -0.241 4.241 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.102 0.898 35 H 0.009 0.991 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.144 0.856 41 H 0.166 0.834 42 H 0.226 0.774 43 H 0.237 0.763 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.266 6.273 6.295 12.137 hybrid contribution 0.923 0.274 -1.483 1.768 sum -7.344 6.547 4.812 10.952 Atomic orbital electron populations 1.21821 0.95772 1.01495 1.01038 1.21115 0.95122 0.96181 0.99307 1.21879 1.01484 0.96183 1.00890 1.21639 0.96377 1.00349 0.96156 1.22054 0.93617 0.95249 0.95564 1.62130 1.29260 1.33778 1.00157 1.19893 0.82303 0.94233 0.97514 1.21112 0.92646 1.17565 1.22726 0.92020 1.24955 0.95382 0.97293 0.96925 1.69937 0.97392 1.42538 1.44094 0.86612 0.76871 0.82504 0.81745 1.20304 1.21423 1.20226 1.21046 1.00270 0.93117 0.89463 1.19894 0.92149 0.93461 0.93147 1.21591 0.99789 1.02966 0.99259 1.22196 0.92270 0.94181 0.93527 1.67071 0.99536 1.26927 1.33828 1.18249 0.86114 0.90046 0.89369 1.42118 1.03999 1.56821 1.37036 1.21257 0.98107 1.05481 0.99273 0.93061 0.93268 0.92765 0.91157 0.93384 0.93129 0.92330 0.91336 0.92960 0.96088 0.89779 0.99123 0.94273 0.93031 0.90820 0.94971 0.85564 0.83433 0.77355 0.76336 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.19 37.16 0.34 -1.25 16 2 C -0.10 -1.27 2.92 -90.62 -0.26 -1.53 16 3 C -0.15 -1.75 8.95 37.16 0.33 -1.42 16 4 C -0.11 -1.61 4.74 -26.73 -0.13 -1.74 16 5 C 0.06 1.17 4.49 -3.82 -0.02 1.15 16 6 N -0.53 -11.05 4.38 -237.51 -1.04 -12.09 16 7 C 0.19 4.73 4.57 -4.98 -0.02 4.71 16 8 C -0.50 -14.05 8.28 -34.44 -0.29 -14.33 16 9 H 0.06 1.73 7.78 -52.48 -0.41 1.32 16 10 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 12 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 16 C 0.09 1.58 4.99 -4.97 -0.02 1.56 16 17 C 0.02 0.40 4.95 -104.36 -0.52 -0.12 16 18 C -0.21 -3.48 9.81 -39.42 -0.39 -3.87 16 19 C 0.13 2.14 11.17 -17.57 -0.20 1.95 16 20 N -0.55 -9.77 10.39 -12.44 -0.13 -9.90 16 21 C 0.40 7.01 7.75 -155.02 -1.20 5.81 16 22 N -0.86 -12.06 9.07 31.13 0.28 -11.78 16 23 C -0.22 -3.99 7.81 -39.23 -0.31 -4.29 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.75 6.65 -51.93 -0.35 0.41 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.74 6.91 -51.93 -0.36 0.38 16 33 H 0.02 0.38 6.61 -51.93 -0.34 0.03 16 34 H 0.08 1.77 7.08 -51.93 -0.37 1.40 16 35 H -0.01 -0.25 8.06 -51.93 -0.42 -0.67 16 36 H 0.04 1.06 5.19 -51.92 -0.27 0.79 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.07 1.14 6.66 -51.93 -0.35 0.80 16 39 H 0.03 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.40 4.88 8.95 -40.82 -0.37 4.51 16 43 H 0.41 5.05 8.82 -40.82 -0.36 4.69 16 44 H 0.13 2.37 7.76 -52.49 -0.41 1.96 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -31.12 353.03 -9.97 -41.09 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.35 Total: 8.19 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -2.77 Total: -11.91 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.15 Total: -59.53 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.12 -9.97 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299299150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.625 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds