Wall clock time and date at job start Mon Mar 30 2020 02:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99972 * 2 1 4 4 H 1.48502 * 109.47032 * 270.00428 * 3 2 1 5 5 H 1.48500 * 109.46885 * 30.00463 * 3 2 1 6 6 H 1.48502 * 109.46806 * 150.00728 * 3 2 1 7 7 C 1.37882 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99718 * 189.25934 * 7 2 1 9 9 C 1.50697 * 119.99945 * 8.97978 * 7 2 1 10 10 C 1.53004 * 115.55129 * 35.65871 * 9 7 2 11 11 N 1.46906 * 109.47030 * 53.84762 * 10 9 7 12 12 C 1.46897 * 111.00181 * 174.15468 * 11 10 9 13 13 H 1.09006 * 109.46546 * 31.00886 * 12 11 10 14 14 C 1.53056 * 109.46837 * 271.02676 * 12 11 10 15 15 C 1.52993 * 109.44305 * 180.57360 * 14 12 11 16 16 C 1.52999 * 109.52965 * 60.31049 * 15 14 12 17 17 C 1.53058 * 109.43281 * 299.68037 * 16 15 14 18 18 C 1.52674 * 109.46523 * 150.99373 * 12 11 10 19 19 C 1.54000 * 109.77699 * 58.00303 * 18 12 11 20 20 C 1.54953 * 104.12654 * 217.25112 * 19 18 12 21 21 C 1.54910 * 102.78167 * 37.72035 * 20 19 18 22 22 C 1.53598 * 110.01626 * 300.65554 * 18 12 11 23 23 C 1.53002 * 117.49908 * 249.99162 * 9 7 2 24 24 C 1.52998 * 117.49901 * 181.32897 * 9 7 2 25 25 H 0.97000 * 120.00413 * 4.66513 * 1 2 3 26 26 H 1.08997 * 109.47082 * 173.84219 * 10 9 7 27 27 H 1.08999 * 109.47135 * 293.84815 * 10 9 7 28 28 H 1.00901 * 110.99940 * 298.11321 * 11 10 9 29 29 H 1.08994 * 109.47366 * 300.56863 * 14 12 11 30 30 H 1.09006 * 109.47544 * 60.58115 * 14 12 11 31 31 H 1.08997 * 109.46310 * 300.29079 * 15 14 12 32 32 H 1.09000 * 109.45231 * 180.32379 * 15 14 12 33 33 H 1.09001 * 109.47856 * 179.69113 * 16 15 14 34 34 H 1.09002 * 109.48362 * 59.67184 * 16 15 14 35 35 H 1.08993 * 109.46575 * 299.42187 * 17 16 15 36 36 H 1.09005 * 109.46544 * 179.44181 * 17 16 15 37 37 H 1.08999 * 110.50379 * 335.91686 * 19 18 12 38 38 H 1.09009 * 110.49492 * 98.59395 * 19 18 12 39 39 H 1.09007 * 110.74669 * 279.39931 * 20 19 18 40 40 H 1.08993 * 110.74829 * 156.04915 * 20 19 18 41 41 H 1.09001 * 110.48645 * 203.52946 * 21 20 19 42 42 H 1.09000 * 110.59246 * 80.95080 * 21 20 19 43 43 H 1.09001 * 110.05290 * 238.34350 * 22 18 12 44 44 H 1.08997 * 110.05428 * 359.77965 * 22 18 12 45 45 H 1.08991 * 117.49747 * 359.97438 * 23 9 7 46 46 H 1.08999 * 117.50070 * 145.02377 * 23 9 7 47 47 H 1.09004 * 117.50101 * 214.97764 * 24 9 7 48 48 H 1.09001 * 117.49752 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0740 -1.2002 0.1500 9 6 1.2649 -2.4911 -0.2048 10 6 0.0844 -2.4316 -1.1764 11 7 0.5337 -1.8746 -2.4594 12 6 -0.5386 -1.9302 -3.4619 13 1 -1.5047 -1.8346 -2.9661 14 6 -0.4757 -3.2682 -4.2024 15 6 -1.5837 -3.3197 -5.2561 16 6 -1.3897 -2.1802 -6.2584 17 6 -1.4556 -0.8390 -5.5238 18 6 -0.3629 -0.7872 -4.4587 19 6 1.0210 -0.8867 -5.1269 20 6 1.4754 0.5871 -5.2768 21 6 0.9561 1.2403 -3.9717 22 6 -0.4081 0.5616 -3.7252 23 6 1.1454 -3.4328 0.9951 24 6 2.0817 -3.7841 -0.1639 25 1 -0.4851 0.8372 -0.0683 26 1 -0.3075 -3.4364 -1.3339 27 1 -0.6980 -1.7977 -0.7591 28 1 0.8733 -0.9314 -2.3450 29 1 0.4941 -3.3686 -4.6896 30 1 -0.6116 -4.0836 -3.4918 31 1 -2.5531 -3.2139 -4.7691 32 1 -1.5427 -4.2748 -5.7796 33 1 -2.1764 -2.2209 -7.0118 34 1 -0.4181 -2.2825 -6.7416 35 1 -2.4310 -0.7324 -5.0492 36 1 -1.3076 -0.0271 -6.2359 37 1 1.7138 -1.4369 -4.4902 38 1 0.9395 -1.3623 -6.1044 39 1 1.0121 1.0471 -6.1498 40 1 2.5618 0.6521 -5.3355 41 1 0.8289 2.3144 -4.1070 42 1 1.6372 1.0390 -3.1449 43 1 -1.2110 1.1792 -4.1278 44 1 -0.5594 0.4017 -2.6577 45 1 1.6022 -3.1144 1.9321 46 1 0.2261 -4.0103 1.0921 47 1 1.7778 -4.5927 -0.8289 48 1 3.1540 -3.6967 0.0112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310807850.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:55 Heat of formation + Delta-G solvation = -14.147916 kcal Electronic energy + Delta-G solvation = -24100.717977 eV Core-core repulsion = 21154.152324 eV Total energy + Delta-G solvation = -2946.565652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.31412 -38.55452 -36.42899 -34.94153 -34.07713 -31.06552 -29.96204 -29.50517 -27.55894 -25.77427 -25.03787 -22.92178 -22.33654 -22.19005 -21.03631 -20.79239 -18.86663 -18.05982 -17.00728 -16.68714 -16.54808 -15.79746 -15.58478 -15.32828 -15.01413 -14.66262 -14.35832 -14.26036 -13.81636 -13.69685 -13.35510 -13.11266 -12.89060 -12.78652 -12.66704 -12.43040 -12.27980 -12.09876 -12.03856 -11.96257 -11.88636 -11.84179 -11.46647 -11.32717 -11.17782 -11.03482 -10.97314 -10.75519 -10.67534 -10.46803 -9.96129 -8.82245 -7.95607 -6.12326 1.38562 1.42435 1.48527 2.42702 3.02813 3.50998 3.66557 3.73399 3.80722 3.97854 4.15805 4.22599 4.32640 4.38612 4.49416 4.50760 4.57203 4.63935 4.68035 4.70648 4.71601 4.81970 4.87091 4.91824 4.94044 5.00270 5.03207 5.08212 5.10315 5.15797 5.17971 5.20737 5.26917 5.29962 5.36325 5.37740 5.44337 5.48537 5.54228 5.56414 5.57420 5.64805 5.73251 5.76391 5.98969 6.48080 6.70025 6.87272 7.09474 7.47767 8.94132 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.008327 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.020347 B = 3361.789118 C = 4522.541955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.044 3.956 3 Si 0.922 3.078 4 H -0.259 1.259 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.494 4.494 8 H 0.042 0.958 9 C 0.034 3.966 10 C 0.117 3.883 11 N -0.672 5.672 12 C 0.101 3.899 13 H 0.007 0.993 14 C -0.099 4.099 15 C -0.114 4.114 16 C -0.114 4.114 17 C -0.099 4.099 18 C -0.054 4.054 19 C -0.110 4.110 20 C -0.115 4.115 21 C -0.129 4.129 22 C -0.126 4.126 23 C -0.209 4.209 24 C -0.186 4.186 25 H 0.257 0.743 26 H 0.024 0.976 27 H 0.044 0.956 28 H 0.347 0.653 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.038 0.962 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 -0.959 -14.072 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.157 4.157 3 Si 0.748 3.252 4 H -0.184 1.184 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.033 3.967 10 C -0.012 4.012 11 N -0.305 5.305 12 C -0.010 4.010 13 H 0.025 0.975 14 C -0.138 4.138 15 C -0.152 4.152 16 C -0.151 4.151 17 C -0.137 4.137 18 C -0.054 4.054 19 C -0.148 4.148 20 C -0.152 4.152 21 C -0.166 4.166 22 C -0.164 4.164 23 C -0.248 4.248 24 C -0.224 4.224 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.168 0.832 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.029 -1.398 -14.200 14.587 hybrid contribution -0.119 1.511 1.382 2.051 sum -3.148 0.112 -12.818 13.200 Atomic orbital electron populations 1.70075 1.06288 1.26641 1.49871 1.25327 0.95285 1.00608 0.94444 0.86139 0.78863 0.81085 0.79094 1.18365 1.21531 1.20432 1.20678 0.92832 0.90868 1.48757 0.93944 1.19074 0.95269 0.88686 0.93640 1.21180 0.96058 0.95364 0.88639 1.60561 1.33966 1.28262 1.07677 1.21417 0.91769 0.95482 0.92292 0.97538 1.21486 0.99497 0.95649 0.97122 1.21509 0.97736 0.99376 0.96556 1.21590 1.02642 0.93423 0.97453 1.21535 0.96926 0.98465 0.96774 1.21037 0.96805 0.92771 0.94807 1.22462 0.95235 0.96554 1.00499 1.22468 1.00332 0.95690 0.96705 1.22413 0.96473 0.99475 0.98260 1.22297 0.97656 0.96474 0.99924 1.22946 1.00285 1.07576 0.93988 1.22784 0.96233 1.01435 1.01904 0.93277 0.95798 0.93813 0.83153 0.91624 0.94235 0.92982 0.90743 0.90463 0.90985 0.92978 0.90604 0.92194 0.89868 0.89941 0.91758 0.91599 0.94305 0.91220 0.93759 0.91479 0.90871 0.90034 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.73 10.56 21.45 0.23 -47.51 16 2 C 0.04 2.31 4.26 84.66 0.36 2.67 16 3 Si 0.92 42.15 29.44 68.60 2.02 44.17 16 4 H -0.26 -11.22 6.34 99.48 0.63 -10.59 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.49 -26.82 8.47 25.60 0.22 -26.60 16 8 H 0.04 2.37 7.83 -2.91 -0.02 2.34 16 9 C 0.03 1.70 2.09 -52.93 -0.11 1.59 16 10 C 0.12 5.60 4.61 86.30 0.40 6.00 16 11 N -0.67 -29.01 5.13 -492.02 -2.52 -31.54 16 12 C 0.10 3.62 1.48 44.83 0.07 3.68 16 13 H 0.01 0.27 7.80 -2.38 -0.02 0.25 16 14 C -0.10 -3.05 5.27 30.61 0.16 -2.89 16 15 C -0.11 -2.69 5.91 30.59 0.18 -2.51 16 16 C -0.11 -2.33 5.71 30.61 0.17 -2.15 16 17 C -0.10 -2.37 4.47 30.51 0.14 -2.23 16 18 C -0.05 -1.63 0.41 -51.86 -0.02 -1.65 16 19 C -0.11 -3.15 4.46 31.60 0.14 -3.01 16 20 C -0.11 -3.07 6.91 31.91 0.22 -2.85 16 21 C -0.13 -4.22 6.58 31.70 0.21 -4.01 16 22 C -0.13 -4.26 5.34 31.25 0.17 -4.09 16 23 C -0.21 -9.77 9.96 30.62 0.30 -9.47 16 24 C -0.19 -8.34 9.92 30.62 0.30 -8.04 16 25 H 0.26 13.40 8.32 -92.71 -0.77 12.62 16 26 H 0.02 1.10 7.57 -2.39 -0.02 1.08 16 27 H 0.04 2.35 6.01 -2.39 -0.01 2.34 16 28 H 0.35 16.17 4.25 -89.69 -0.38 15.79 16 29 H 0.07 2.02 7.21 -2.39 -0.02 2.00 16 30 H 0.04 1.31 7.67 -2.38 -0.02 1.29 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.40 6.19 -2.39 -0.01 1.38 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.06 2.06 6.89 -2.39 -0.02 2.04 16 38 H 0.08 1.98 5.85 -2.38 -0.01 1.97 16 39 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.04 1.53 6.88 -2.39 -0.02 1.51 16 43 H 0.07 2.09 7.67 -2.39 -0.02 2.07 16 44 H 0.04 1.84 6.85 -2.39 -0.02 1.83 16 45 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 46 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.08 3.37 8.14 -2.38 -0.02 3.35 16 48 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -55.25 346.21 3.08 -52.16 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: 0.45 Total: 38.26 kcal Atomic # 6 Polarization: -58.46 SS G_CDS: 2.91 Total: -55.55 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -2.30 Total: -79.04 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.02 Total: 44.17 kcal Total: -55.25 3.08 -52.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310807850.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.014 kcal (2) G-P(sol) polarization free energy of solvation -55.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds