Wall clock time and date at job start Mon Mar 30 2020 01:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47166 * 2 1 4 4 C 1.52996 * 109.46991 * 120.00230 * 2 1 3 5 5 H 1.09002 * 109.47038 * 299.06521 * 4 2 1 6 6 C 1.53004 * 109.47390 * 59.06912 * 4 2 1 7 7 N 1.46502 * 109.46903 * 184.99893 * 6 4 2 8 8 C 1.34954 * 126.03402 * 125.00282 * 7 6 4 9 9 C 1.35309 * 107.74527 * 179.97438 * 8 7 6 10 10 C 1.39877 * 107.92022 * 359.97438 * 9 8 7 11 11 N 1.30829 * 108.20091 * 359.73989 * 10 9 8 12 12 N 1.46900 * 109.47097 * 179.07039 * 4 2 1 13 13 C 1.46901 * 110.99891 * 104.46444 * 12 4 2 14 14 C 1.53003 * 109.47043 * 174.21838 * 13 12 4 15 15 C 1.50696 * 115.56493 * 39.72132 * 14 13 12 16 16 H 1.08001 * 119.99709 * 261.18568 * 15 14 13 17 17 C 1.37875 * 120.00226 * 81.17379 * 15 14 13 18 18 N 1.31516 * 120.00029 * 2.33530 * 17 15 14 19 19 Si 1.86794 * 120.00155 * 182.32491 * 17 15 14 20 20 H 1.48496 * 109.47312 * 60.00585 * 19 17 15 21 21 H 1.48504 * 109.47312 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47579 * 300.00603 * 19 17 15 23 23 C 1.52999 * 117.49802 * 254.03266 * 14 13 12 24 24 C 1.52998 * 117.49715 * 185.41133 * 14 13 12 25 25 H 1.09000 * 109.47179 * 300.00053 * 1 2 3 26 26 H 1.09000 * 109.47273 * 60.00024 * 1 2 3 27 27 H 1.09000 * 109.47382 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47179 * 239.99947 * 2 1 3 29 29 H 1.09003 * 109.47041 * 174.74595 * 3 2 1 30 30 H 1.09004 * 109.47585 * 294.73996 * 3 2 1 31 31 H 1.08999 * 109.47423 * 54.74342 * 3 2 1 32 32 H 1.08996 * 109.46841 * 304.99748 * 6 4 2 33 33 H 1.09003 * 109.46885 * 65.00107 * 6 4 2 34 34 H 1.08003 * 126.12317 * 359.97438 * 8 7 6 35 35 H 1.07998 * 126.04308 * 180.02562 * 9 8 7 36 36 H 1.08003 * 125.89496 * 179.97438 * 10 9 8 37 37 H 1.00900 * 111.00241 * 340.51329 * 12 4 2 38 38 H 1.09005 * 109.47513 * 54.21572 * 13 12 4 39 39 H 1.08997 * 109.47296 * 294.21509 * 13 12 4 40 40 H 0.96991 * 120.00377 * 185.01907 * 18 17 15 41 41 H 1.09006 * 117.50102 * 359.97438 * 23 14 13 42 42 H 1.09001 * 117.50331 * 145.02194 * 23 14 13 43 43 H 1.09010 * 117.49733 * 214.97765 * 24 14 13 44 44 H 1.08995 * 117.50187 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6903 -0.1979 2.1391 6 6 1.5109 -2.1569 1.2610 7 7 1.8994 -2.8102 2.5134 8 6 1.0644 -3.4064 3.3901 9 6 1.8120 -3.8856 4.4110 10 6 3.1498 -3.5721 4.1490 11 7 3.2039 -2.9327 3.0089 12 7 3.5088 -0.7408 1.2380 13 6 4.0554 0.2360 2.1893 14 6 5.5768 0.0872 2.2554 15 6 6.2627 -0.1710 0.9387 16 1 6.5406 -1.1775 0.6629 17 6 6.5354 0.8777 0.0861 18 7 6.2384 2.1086 0.4417 19 14 7.3267 0.5503 -1.5739 20 1 6.4497 -0.3428 -2.3729 21 1 7.5142 1.8349 -2.2950 22 1 8.6460 -0.1015 -1.3736 23 6 6.1684 -0.5743 3.5018 24 6 6.3251 0.9326 3.2880 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1259 1.4438 0.0941 30 1 1.7556 1.9284 -0.9333 31 1 1.6018 1.9827 0.8391 32 1 0.4240 -2.1442 1.1797 33 1 1.9319 -2.7061 0.4188 34 1 -0.0083 -3.4865 3.2940 35 1 1.4414 -4.4170 5.2751 36 1 3.9928 -3.8189 4.7774 37 1 3.8655 -0.5787 0.3082 38 1 3.6298 0.0588 3.1771 39 1 3.8030 1.2441 1.8604 40 1 6.3625 2.8379 -0.1855 41 1 5.4738 -0.9030 4.2749 42 1 7.0537 -1.1962 3.3694 43 1 7.3136 1.3021 3.0149 44 1 5.7337 1.5951 3.9199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340534759.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:27 Heat of formation + Delta-G solvation = 101.516926 kcal Electronic energy + Delta-G solvation = -22872.363748 eV Core-core repulsion = 19827.273356 eV Total energy + Delta-G solvation = -3045.090392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.63909 -38.03810 -36.16584 -32.73336 -32.07140 -31.82125 -29.59448 -28.00018 -26.66556 -25.38380 -24.30479 -22.28444 -20.84261 -20.58999 -20.29110 -19.84452 -18.71505 -16.85957 -15.83807 -15.18763 -14.92513 -14.64053 -14.52257 -13.99012 -13.80106 -13.49959 -13.14910 -12.87261 -12.61216 -12.43126 -12.31743 -12.14075 -11.84605 -11.54461 -11.30678 -11.10338 -10.89614 -10.82253 -10.81940 -10.48110 -10.38523 -10.36120 -9.97191 -9.89296 -9.18707 -8.92224 -8.78474 -8.29641 -8.15491 -7.89712 -7.13339 -5.93737 -3.96915 2.40020 3.01322 3.33380 3.33552 3.38863 3.42751 4.46890 4.70450 4.83132 5.04302 5.13628 5.19568 5.23674 5.35741 5.52261 5.54434 5.59006 5.73487 5.78546 5.86936 5.96909 6.01393 6.05831 6.12667 6.18075 6.27838 6.34178 6.38203 6.48348 6.59592 6.66384 6.78759 6.95530 7.00425 7.11318 7.13633 7.28208 7.47510 7.57849 7.67938 7.97699 8.22016 8.30889 8.53256 8.67643 9.06294 9.66128 11.14369 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014915 B = 0.007003 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.882250 B = 3997.293238 C = 5040.047323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.153 4.153 4 C 0.079 3.921 5 H 0.065 0.935 6 C 0.141 3.859 7 N -0.356 5.356 8 C 0.028 3.972 9 C -0.281 4.281 10 C 0.011 3.989 11 N -0.215 5.215 12 N -0.647 5.647 13 C 0.118 3.882 14 C 0.061 3.939 15 C -0.472 4.472 16 H 0.059 0.941 17 C 0.067 3.933 18 N -0.884 5.884 19 Si 0.882 3.118 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.279 1.279 23 C -0.198 4.198 24 C -0.169 4.169 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.161 0.839 35 H 0.136 0.864 36 H 0.173 0.827 37 H 0.350 0.650 38 H 0.031 0.969 39 H 0.026 0.974 40 H 0.257 0.743 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.229 -6.115 2.005 14.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 C -0.211 4.211 4 C -0.033 4.033 5 H 0.083 0.917 6 C 0.019 3.981 7 N -0.139 5.139 8 C -0.118 4.118 9 C -0.311 4.311 10 C -0.176 4.176 11 N -0.036 5.036 12 N -0.278 5.278 13 C -0.011 4.011 14 C 0.060 3.940 15 C -0.510 4.510 16 H 0.077 0.923 17 C -0.135 4.135 18 N -0.522 5.522 19 Si 0.710 3.290 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.235 4.235 24 C -0.208 4.208 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.179 0.821 35 H 0.153 0.847 36 H 0.190 0.810 37 H 0.172 0.828 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.375 -5.790 1.396 13.734 hybrid contribution -0.392 0.402 -0.680 0.882 sum -12.767 -5.388 0.716 13.876 Atomic orbital electron populations 1.21922 0.95703 1.01166 1.01712 1.21742 0.95459 0.97556 0.98947 1.21939 1.03655 0.94640 1.00828 1.21826 0.92313 0.92267 0.96914 0.91706 1.21953 0.98475 0.94457 0.83188 1.48747 1.04751 1.42566 1.17818 1.22427 0.97116 0.99765 0.92517 1.21373 0.93571 1.13465 1.02685 1.23980 0.97325 0.99955 0.96381 1.78060 0.97298 1.17490 1.10725 1.60353 1.00980 1.53528 1.12947 1.21345 0.95465 0.91672 0.92592 1.18664 0.89495 0.96853 0.88981 1.20407 1.36671 0.93045 1.00924 0.92301 1.24958 0.95619 0.95061 0.97842 1.70012 1.49135 0.98652 1.34365 0.86834 0.80296 0.77134 0.84755 1.20323 1.21647 1.20419 1.22858 1.02525 0.95228 1.02866 1.22555 1.02121 0.91340 1.04744 0.92830 0.92793 0.92833 0.90747 0.90009 0.93202 0.93292 0.89472 0.89955 0.82145 0.84652 0.81017 0.82809 0.95104 0.95624 0.93351 0.92026 0.91163 0.90408 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.83 37.16 0.33 -1.23 16 2 C -0.12 -1.59 2.30 -90.63 -0.21 -1.80 16 3 C -0.15 -2.41 8.45 37.15 0.31 -2.10 16 4 C 0.08 1.23 2.01 -67.71 -0.14 1.09 16 5 H 0.06 1.09 7.50 -51.93 -0.39 0.70 16 6 C 0.14 1.92 5.94 -4.04 -0.02 1.90 16 7 N -0.36 -5.56 3.68 -61.36 -0.23 -5.79 16 8 C 0.03 0.37 11.45 -17.22 -0.20 0.17 16 9 C -0.28 -3.83 10.80 -40.01 -0.43 -4.27 16 10 C 0.01 0.17 12.03 -17.37 -0.21 -0.04 16 11 N -0.22 -4.00 11.45 30.63 0.35 -3.65 16 12 N -0.65 -12.73 4.74 -106.72 -0.51 -13.24 16 13 C 0.12 2.63 5.17 -3.82 -0.02 2.61 16 14 C 0.06 1.50 1.76 -155.66 -0.27 1.22 16 15 C -0.47 -12.58 7.47 -34.44 -0.26 -12.84 16 16 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 17 C 0.07 1.78 5.44 -17.82 -0.10 1.68 16 18 N -0.88 -24.30 12.88 55.43 0.71 -23.58 16 19 Si 0.88 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.20 -4.61 9.88 -26.73 -0.26 -4.87 16 24 C -0.17 -4.15 9.46 -26.73 -0.25 -4.41 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.48 6.30 -51.93 -0.33 0.15 16 28 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 29 H 0.08 1.60 5.62 -51.93 -0.29 1.31 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.89 6.08 -51.93 -0.32 0.57 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 35 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.17 2.39 8.06 -52.48 -0.42 1.96 16 37 H 0.35 7.50 6.64 -39.29 -0.26 7.24 16 38 H 0.03 0.70 7.77 -51.93 -0.40 0.29 16 39 H 0.03 0.61 6.22 -51.93 -0.32 0.29 16 40 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 41 H 0.06 1.36 8.08 -51.93 -0.42 0.94 16 42 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 43 H 0.08 2.03 8.14 -51.92 -0.42 1.61 16 44 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -29.09 352.37 -8.46 -37.55 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.35 Total: 10.41 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -1.73 Total: -22.87 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.33 Total: -46.27 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.09 -8.46 -37.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340534759.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.068 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds