Wall clock time and date at job start Mon Mar 30 2020 01:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47166 * 2 1 4 4 C 1.52996 * 109.46991 * 120.00230 * 2 1 3 5 5 H 1.09002 * 109.47038 * 299.06521 * 4 2 1 6 6 C 1.53004 * 109.47390 * 59.06912 * 4 2 1 7 7 N 1.46502 * 109.46903 * 184.99893 * 6 4 2 8 8 C 1.34954 * 126.03402 * 125.00282 * 7 6 4 9 9 C 1.35309 * 107.74527 * 179.97438 * 8 7 6 10 10 C 1.39877 * 107.92022 * 359.97438 * 9 8 7 11 11 N 1.30829 * 108.20091 * 359.73989 * 10 9 8 12 12 N 1.46900 * 109.47097 * 179.07039 * 4 2 1 13 13 C 1.46901 * 110.99891 * 104.46444 * 12 4 2 14 14 C 1.53003 * 109.47043 * 174.21838 * 13 12 4 15 15 C 1.50696 * 115.56493 * 39.72132 * 14 13 12 16 16 H 1.08001 * 119.99709 * 261.18568 * 15 14 13 17 17 C 1.37875 * 120.00226 * 81.17379 * 15 14 13 18 18 N 1.31516 * 120.00029 * 2.33530 * 17 15 14 19 19 Si 1.86794 * 120.00155 * 182.32491 * 17 15 14 20 20 H 1.48496 * 109.47312 * 60.00585 * 19 17 15 21 21 H 1.48504 * 109.47312 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47579 * 300.00603 * 19 17 15 23 23 C 1.52999 * 117.49802 * 254.03266 * 14 13 12 24 24 C 1.52998 * 117.49715 * 185.41133 * 14 13 12 25 25 H 1.09000 * 109.47179 * 300.00053 * 1 2 3 26 26 H 1.09000 * 109.47273 * 60.00024 * 1 2 3 27 27 H 1.09000 * 109.47382 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47179 * 239.99947 * 2 1 3 29 29 H 1.09003 * 109.47041 * 174.74595 * 3 2 1 30 30 H 1.09004 * 109.47585 * 294.73996 * 3 2 1 31 31 H 1.08999 * 109.47423 * 54.74342 * 3 2 1 32 32 H 1.08996 * 109.46841 * 304.99748 * 6 4 2 33 33 H 1.09003 * 109.46885 * 65.00107 * 6 4 2 34 34 H 1.08003 * 126.12317 * 359.97438 * 8 7 6 35 35 H 1.07998 * 126.04308 * 180.02562 * 9 8 7 36 36 H 1.08003 * 125.89496 * 179.97438 * 10 9 8 37 37 H 1.00900 * 111.00241 * 340.51329 * 12 4 2 38 38 H 1.09005 * 109.47513 * 54.21572 * 13 12 4 39 39 H 1.08997 * 109.47296 * 294.21509 * 13 12 4 40 40 H 0.96991 * 120.00377 * 185.01907 * 18 17 15 41 41 H 1.09006 * 117.50102 * 359.97438 * 23 14 13 42 42 H 1.09001 * 117.50331 * 145.02194 * 23 14 13 43 43 H 1.09010 * 117.49733 * 214.97765 * 24 14 13 44 44 H 1.08995 * 117.50187 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6903 -0.1979 2.1391 6 6 1.5109 -2.1569 1.2610 7 7 1.8994 -2.8102 2.5134 8 6 1.0644 -3.4064 3.3901 9 6 1.8120 -3.8856 4.4110 10 6 3.1498 -3.5721 4.1490 11 7 3.2039 -2.9327 3.0089 12 7 3.5088 -0.7408 1.2380 13 6 4.0554 0.2360 2.1893 14 6 5.5768 0.0872 2.2554 15 6 6.2627 -0.1710 0.9387 16 1 6.5406 -1.1775 0.6629 17 6 6.5354 0.8777 0.0861 18 7 6.2384 2.1086 0.4417 19 14 7.3267 0.5503 -1.5739 20 1 6.4497 -0.3428 -2.3729 21 1 7.5142 1.8349 -2.2950 22 1 8.6460 -0.1015 -1.3736 23 6 6.1684 -0.5743 3.5018 24 6 6.3251 0.9326 3.2880 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1259 1.4438 0.0941 30 1 1.7556 1.9284 -0.9333 31 1 1.6018 1.9827 0.8391 32 1 0.4240 -2.1442 1.1797 33 1 1.9319 -2.7061 0.4188 34 1 -0.0083 -3.4865 3.2940 35 1 1.4414 -4.4170 5.2751 36 1 3.9928 -3.8189 4.7774 37 1 3.8655 -0.5787 0.3082 38 1 3.6298 0.0588 3.1771 39 1 3.8030 1.2441 1.8604 40 1 6.3625 2.8379 -0.1855 41 1 5.4738 -0.9030 4.2749 42 1 7.0537 -1.1962 3.3694 43 1 7.3136 1.3021 3.0149 44 1 5.7337 1.5951 3.9199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340534759.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:26 Heat of formation + Delta-G solvation = 85.382946 kcal Electronic energy + Delta-G solvation = -22873.063370 eV Core-core repulsion = 19827.273356 eV Total energy + Delta-G solvation = -3045.790014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.74476 -39.44471 -37.92460 -33.94372 -33.84267 -33.49706 -30.70969 -29.23840 -27.90923 -27.29291 -25.81903 -23.62076 -22.81214 -21.67569 -21.43094 -21.26778 -20.43121 -17.98075 -17.77168 -16.61138 -16.41772 -16.19039 -15.99094 -15.57595 -15.11342 -14.77921 -14.57124 -14.11571 -14.02544 -13.65874 -13.58306 -13.40194 -13.21020 -12.95664 -12.84328 -12.79873 -12.77675 -12.48704 -12.30533 -12.03540 -11.93854 -11.67977 -11.54344 -11.12682 -10.99479 -10.82558 -10.31046 -10.09556 -9.84216 -9.26119 -8.70131 -8.01527 -6.09767 1.33529 1.42394 1.44568 1.50983 1.97008 2.21913 2.47192 3.25021 3.42627 3.67196 3.70769 3.96529 4.06747 4.16342 4.24264 4.39382 4.41283 4.48565 4.53447 4.68174 4.70593 4.79477 4.80675 4.87275 4.93960 4.99231 5.03861 5.04959 5.07921 5.12895 5.18448 5.25919 5.33977 5.34932 5.42041 5.48478 5.67408 5.68734 5.85563 6.00902 6.46772 6.50859 6.68121 6.87373 6.97746 7.17576 7.55496 9.05765 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014915 B = 0.007003 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.882250 B = 3997.293238 C = 5040.047323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.148 4.148 4 C 0.082 3.918 5 H 0.052 0.948 6 C 0.143 3.857 7 N -0.367 5.367 8 C 0.037 3.963 9 C -0.288 4.288 10 C -0.003 4.003 11 N -0.277 5.277 12 N -0.649 5.649 13 C 0.142 3.858 14 C 0.045 3.955 15 C -0.481 4.481 16 H 0.043 0.957 17 C 0.033 3.967 18 N -0.906 5.906 19 Si 0.937 3.063 20 H -0.269 1.269 21 H -0.289 1.289 22 H -0.282 1.282 23 C -0.180 4.180 24 C -0.174 4.174 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.132 0.868 33 H 0.077 0.923 34 H 0.206 0.794 35 H 0.161 0.839 36 H 0.180 0.820 37 H 0.337 0.663 38 H 0.023 0.977 39 H 0.004 0.996 40 H 0.256 0.744 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.839 -7.311 1.540 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.206 4.206 4 C -0.030 4.030 5 H 0.070 0.930 6 C 0.021 3.979 7 N -0.150 5.150 8 C -0.109 4.109 9 C -0.318 4.318 10 C -0.190 4.190 11 N -0.098 5.098 12 N -0.279 5.279 13 C 0.013 3.987 14 C 0.044 3.956 15 C -0.519 4.519 16 H 0.061 0.939 17 C -0.167 4.167 18 N -0.544 5.544 19 Si 0.764 3.236 20 H -0.194 1.194 21 H -0.214 1.214 22 H -0.208 1.208 23 C -0.217 4.217 24 C -0.212 4.212 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.222 0.778 35 H 0.178 0.822 36 H 0.197 0.803 37 H 0.157 0.843 38 H 0.042 0.958 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.995 -7.004 0.941 16.577 hybrid contribution 0.407 0.756 -0.483 0.985 sum -14.588 -6.248 0.458 15.877 Atomic orbital electron populations 1.21864 0.92494 1.03008 1.02376 1.21652 0.97991 0.95521 0.97762 1.21860 1.00694 0.96616 1.01389 1.21885 0.89619 0.94159 0.97293 0.93013 1.22069 1.00814 0.92329 0.82642 1.48882 1.04342 1.43134 1.18601 1.23144 0.98826 0.97714 0.91180 1.21720 0.92526 1.13689 1.03856 1.24319 0.99011 0.99594 0.96039 1.77964 0.99690 1.19772 1.12365 1.60316 1.03873 1.52333 1.11425 1.20965 0.93825 0.91188 0.92745 1.18852 0.90908 0.97196 0.88627 1.20453 1.37055 0.92340 1.02047 0.93875 1.25467 0.95935 0.94771 1.00528 1.70111 1.49933 0.99174 1.35207 0.85952 0.79237 0.76994 0.81427 1.19362 1.21445 1.20791 1.22772 1.02260 0.94143 1.02497 1.22452 1.01185 0.92192 1.05405 0.92604 0.91766 0.90359 0.90753 0.94395 0.91957 0.93453 0.85053 0.90495 0.77768 0.82174 0.80348 0.84274 0.95830 0.97785 0.93498 0.90750 0.91597 0.92549 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.83 71.98 0.64 -1.82 16 2 C -0.11 -2.80 2.30 -10.80 -0.02 -2.82 16 3 C -0.15 -4.65 8.45 71.98 0.61 -4.04 16 4 C 0.08 2.47 2.01 44.92 0.09 2.56 16 5 H 0.05 1.70 7.50 -2.39 -0.02 1.68 16 6 C 0.14 3.53 5.94 86.38 0.51 4.04 16 7 N -0.37 -10.71 3.68 -348.05 -1.28 -11.99 16 8 C 0.04 0.85 11.45 83.54 0.96 1.80 16 9 C -0.29 -7.16 10.80 21.99 0.24 -6.93 16 10 C 0.00 -0.10 12.03 85.24 1.03 0.92 16 11 N -0.28 -10.19 11.45 -57.02 -0.65 -10.84 16 12 N -0.65 -26.00 4.74 -491.56 -2.33 -28.33 16 13 C 0.14 6.52 5.17 86.30 0.45 6.97 16 14 C 0.04 2.27 1.76 -52.93 -0.09 2.18 16 15 C -0.48 -26.30 7.47 25.60 0.19 -26.11 16 16 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 17 C 0.03 1.77 5.44 84.65 0.46 2.23 16 18 N -0.91 -51.01 12.88 21.45 0.28 -50.73 16 19 Si 0.94 43.46 29.54 68.60 2.03 45.49 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 23 C -0.18 -8.52 9.88 30.59 0.30 -8.22 16 24 C -0.17 -8.78 9.46 30.59 0.29 -8.49 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.01 6.30 -2.39 -0.02 0.99 16 28 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 29 H 0.04 1.53 5.62 -2.39 -0.01 1.51 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.13 2.04 6.08 -2.39 -0.01 2.03 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.21 2.67 8.06 -2.91 -0.02 2.64 16 35 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 36 H 0.18 4.97 8.06 -2.91 -0.02 4.94 16 37 H 0.34 14.87 6.64 -89.69 -0.60 14.28 16 38 H 0.02 1.09 7.77 -2.38 -0.02 1.07 16 39 H 0.00 0.21 6.22 -2.39 -0.01 0.19 16 40 H 0.26 13.95 8.32 -92.72 -0.77 13.18 16 41 H 0.07 3.32 8.08 -2.38 -0.02 3.30 16 42 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 43 H 0.06 3.05 8.14 -2.38 -0.02 3.03 16 44 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -65.03 352.37 4.05 -60.98 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.37 Total: 33.15 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 5.64 Total: -37.73 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -3.99 Total: -101.90 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -65.03 4.05 -60.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340534759.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.367 kcal (2) G-P(sol) polarization free energy of solvation -65.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds