Wall clock time and date at job start Mon Mar 30 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46508 * 109.47415 * 2 1 4 4 C 1.46491 * 119.99948 * 270.00451 * 3 2 1 5 5 C 1.38998 * 119.99374 * 90.00194 * 3 2 1 6 6 C 1.39139 * 119.70266 * 184.97711 * 5 3 2 7 7 C 1.38297 * 119.10090 * 180.02562 * 6 5 3 8 8 C 1.38881 * 118.50302 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.33478 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.46808 * 90.00545 * 9 8 7 11 11 C 1.46893 * 110.99889 * 293.94992 * 10 9 8 12 12 C 1.53002 * 109.47315 * 164.21609 * 11 10 9 13 13 C 1.46906 * 111.00107 * 170.00083 * 10 9 8 14 14 C 1.50701 * 109.46715 * 284.30799 * 13 10 9 15 15 H 1.07994 * 120.00434 * 4.64469 * 14 13 10 16 16 C 1.37881 * 119.99923 * 184.64375 * 14 13 10 17 17 N 1.31519 * 119.99792 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00218 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47188 * 90.00104 * 18 16 14 20 20 H 1.48502 * 109.47197 * 210.00076 * 18 16 14 21 21 H 1.48505 * 109.47254 * 329.99952 * 18 16 14 22 22 C 1.38023 * 119.33143 * 0.02562 * 8 7 6 23 23 N 1.31980 * 120.85639 * 359.97438 * 22 8 7 24 24 H 1.09001 * 109.47082 * 59.99386 * 1 2 3 25 25 H 1.08999 * 109.47345 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46996 * 299.99839 * 1 2 3 27 27 H 1.09007 * 109.46996 * 240.00161 * 2 1 3 28 28 H 1.08998 * 109.47806 * 120.00646 * 2 1 3 29 29 H 1.09002 * 109.47327 * 269.99765 * 4 3 2 30 30 H 1.08996 * 109.47849 * 29.99862 * 4 3 2 31 31 H 1.09006 * 109.47153 * 150.00208 * 4 3 2 32 32 H 1.08001 * 120.45082 * 359.97438 * 6 5 3 33 33 H 1.08003 * 120.74926 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46875 * 210.00143 * 9 8 7 35 35 H 1.08994 * 109.47196 * 330.00302 * 9 8 7 36 36 H 1.08999 * 109.47540 * 284.21708 * 11 10 9 37 37 H 1.09005 * 109.47312 * 44.22165 * 11 10 9 38 38 H 1.08993 * 109.47156 * 299.61992 * 12 11 10 39 39 H 1.09001 * 109.47145 * 59.62174 * 12 11 10 40 40 H 1.09003 * 109.47665 * 179.61606 * 12 11 10 41 41 H 1.09005 * 109.46544 * 44.30167 * 13 10 9 42 42 H 1.08997 * 109.47408 * 164.30603 * 13 10 9 43 43 H 0.96996 * 119.99736 * 179.97438 * 17 16 14 44 44 H 1.08001 * 119.57728 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 2.2501 2.0364 1.2038 6 6 2.6137 3.3794 1.1990 7 6 2.8418 4.0187 2.4040 8 6 2.6985 3.2908 3.5780 9 6 2.9363 3.9465 4.9139 10 7 1.6778 4.5203 5.4087 11 6 1.2305 5.6261 4.5514 12 6 -0.2388 5.9364 4.8444 13 6 1.8114 4.9575 6.8048 14 6 1.7920 3.7543 7.7119 15 1 1.7663 2.7604 7.2902 16 6 1.8072 3.9223 9.0804 17 7 1.8392 5.1326 9.5939 18 14 1.7839 2.4309 10.2048 19 1 3.1774 2.0050 10.4911 20 1 1.1021 2.7806 11.4769 21 1 1.0537 1.3214 9.5406 22 6 2.3361 1.9608 3.5090 23 7 2.1248 1.3764 2.3447 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.2919 1.9006 -1.5834 30 1 1.5817 1.6879 -2.0283 31 1 2.0956 3.1411 -1.1383 32 1 2.7174 3.9150 0.2670 33 1 3.1249 5.0606 2.4313 34 1 3.3007 3.2037 5.6235 35 1 3.6777 4.7378 4.8034 36 1 1.8356 6.5099 4.7529 37 1 1.3399 5.3417 3.5048 38 1 -0.8449 5.0547 4.6363 39 1 -0.3495 6.2143 5.8925 40 1 -0.5689 6.7614 4.2131 41 1 2.7535 5.4915 6.9296 42 1 0.9827 5.6181 7.0596 43 1 1.8495 5.2508 10.5566 44 1 2.2239 1.3909 4.4195 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361500867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:21 Heat of formation + Delta-G solvation = 47.917588 kcal Electronic energy + Delta-G solvation = -21660.309262 eV Core-core repulsion = 18612.894629 eV Total energy + Delta-G solvation = -3047.414633 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.16580 -37.48255 -36.25613 -32.74210 -32.24756 -31.90846 -30.45539 -29.38192 -27.34967 -26.10717 -24.48925 -23.40809 -22.50383 -22.18646 -20.58541 -19.64137 -17.40338 -16.57250 -16.33268 -15.36468 -15.15314 -14.80084 -14.59033 -14.42242 -14.05676 -13.73708 -13.43242 -13.24304 -13.05210 -12.83344 -12.60966 -12.44183 -12.20589 -11.94573 -11.82048 -11.50752 -11.23854 -11.05928 -10.96664 -10.80789 -10.71417 -10.51597 -10.21874 -9.75760 -9.62872 -9.39367 -9.16484 -9.06060 -8.37600 -7.37185 -7.15306 -5.97998 -3.98718 1.57811 1.72835 2.95429 3.35211 3.41572 3.46350 4.16839 4.47590 4.65189 4.84884 5.05509 5.10180 5.13690 5.18012 5.30123 5.36406 5.38354 5.39298 5.46050 5.50048 5.53852 5.67178 5.75472 5.83931 5.93202 5.99826 6.14744 6.15218 6.21951 6.32790 6.40919 6.51747 6.62967 6.69448 6.86377 6.90630 7.05870 7.29827 7.38603 7.49584 7.87388 8.17533 8.26892 8.42276 8.60059 9.08936 9.65231 11.12627 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021351 B = 0.004063 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.096703 B = 6889.642606 C = 7545.384724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.127 3.873 3 N -0.620 5.620 4 C 0.099 3.901 5 C 0.390 3.610 6 C -0.243 4.243 7 C -0.034 4.034 8 C -0.168 4.168 9 C 0.110 3.890 10 N -0.530 5.530 11 C 0.048 3.952 12 C -0.142 4.142 13 C 0.190 3.810 14 C -0.502 4.502 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.901 5.901 18 Si 0.896 3.104 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.273 1.273 22 C 0.166 3.834 23 N -0.541 5.541 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.026 0.974 36 H 0.019 0.981 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.042 0.958 41 H -0.012 1.012 42 H 0.037 0.963 43 H 0.260 0.740 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 -4.612 -20.664 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.004 3.996 3 N -0.336 5.336 4 C -0.045 4.045 5 C 0.157 3.843 6 C -0.268 4.268 7 C -0.060 4.060 8 C -0.172 4.172 9 C -0.019 4.019 10 N -0.254 5.254 11 C -0.081 4.081 12 C -0.200 4.200 13 C 0.066 3.934 14 C -0.541 4.541 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.541 5.541 18 Si 0.724 3.276 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.197 1.197 22 C 0.009 3.991 23 N -0.258 5.258 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.006 0.994 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.131 -5.836 -20.677 21.485 hybrid contribution 0.751 0.916 0.731 1.392 sum 0.883 -4.920 -19.947 20.563 Atomic orbital electron populations 1.22155 0.96658 1.01652 1.02061 1.21272 0.93775 0.82060 1.02533 1.46226 1.71500 1.13679 1.02200 1.21604 1.00424 0.97807 0.84652 1.18265 0.91632 0.88197 0.86215 1.21302 1.12072 0.94356 0.99028 1.21228 0.94224 0.99131 0.91439 1.20732 1.04867 0.95667 0.95975 1.20776 0.91397 0.98084 0.91626 1.62186 1.28296 1.30657 1.04306 1.22059 0.95991 0.92770 0.97275 1.21728 0.96227 1.00203 1.01815 1.19803 0.95844 0.96165 0.81633 1.21175 1.49433 0.93181 0.90276 0.91876 1.24981 0.95597 0.95844 0.98219 1.69958 1.51352 1.20787 1.11961 0.86533 0.78015 0.83037 0.80058 1.20797 1.21375 1.19734 1.22356 0.90733 0.92037 0.94000 1.67177 1.22051 1.39049 0.97483 0.93265 0.92048 0.92129 0.91751 0.89538 0.93437 0.91525 0.91284 0.85711 0.85645 0.89211 0.95557 0.96276 0.92158 0.92559 0.92045 0.93859 0.99423 0.94489 0.93021 0.82558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.24 37.15 0.38 -1.27 16 2 C 0.13 1.31 6.19 -4.04 -0.03 1.29 16 3 N -0.62 -7.19 2.99 -181.72 -0.54 -7.74 16 4 C 0.10 0.80 10.28 59.84 0.62 1.41 16 5 C 0.39 5.63 7.37 -155.03 -1.14 4.48 16 6 C -0.24 -3.25 9.27 -39.23 -0.36 -3.62 16 7 C -0.03 -0.49 8.00 -39.32 -0.31 -0.80 16 8 C -0.17 -2.79 4.94 -104.46 -0.52 -3.31 16 9 C 0.11 2.08 4.96 -4.98 -0.02 2.06 16 10 N -0.53 -11.35 4.37 -237.51 -1.04 -12.38 16 11 C 0.05 0.88 5.52 -3.83 -0.02 0.86 16 12 C -0.14 -2.53 9.98 37.16 0.37 -2.16 16 13 C 0.19 4.90 4.59 -4.97 -0.02 4.88 16 14 C -0.50 -13.96 8.61 -34.44 -0.30 -14.26 16 15 H 0.06 1.73 7.66 -52.49 -0.40 1.33 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 18 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.17 2.79 10.85 -17.57 -0.19 2.60 16 23 N -0.54 -8.77 9.08 -12.44 -0.11 -8.88 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 27 H 0.06 0.52 8.07 -51.92 -0.42 0.10 16 28 H 0.09 1.04 7.30 -51.93 -0.38 0.66 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 31 H 0.07 0.52 5.98 -51.93 -0.31 0.21 16 32 H 0.13 1.34 6.03 -52.49 -0.32 1.02 16 33 H 0.13 1.62 7.76 -52.48 -0.41 1.21 16 34 H 0.09 1.82 7.27 -51.93 -0.38 1.44 16 35 H 0.03 0.49 8.07 -51.93 -0.42 0.07 16 36 H 0.02 0.35 8.05 -51.93 -0.42 -0.06 16 37 H 0.06 1.01 5.16 -51.93 -0.27 0.75 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.21 6.52 -51.93 -0.34 0.87 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H -0.01 -0.33 8.00 -51.93 -0.42 -0.75 16 42 H 0.04 1.02 6.23 -51.93 -0.32 0.70 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.16 2.58 8.06 -52.49 -0.42 2.15 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -30.86 352.24 -9.63 -40.48 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.31 Total: -1.06 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.65 Total: -6.39 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.96 Total: -54.98 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.86 -9.63 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361500867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.402 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds