Wall clock time and date at job start Mon Mar 30 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46508 * 109.47415 * 2 1 4 4 C 1.46491 * 119.99948 * 270.00451 * 3 2 1 5 5 C 1.38998 * 119.99374 * 90.00194 * 3 2 1 6 6 C 1.39139 * 119.70266 * 184.97711 * 5 3 2 7 7 C 1.38297 * 119.10090 * 180.02562 * 6 5 3 8 8 C 1.38881 * 118.50302 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.33478 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.46808 * 90.00545 * 9 8 7 11 11 C 1.46893 * 110.99889 * 293.94992 * 10 9 8 12 12 C 1.53002 * 109.47315 * 164.21609 * 11 10 9 13 13 C 1.46906 * 111.00107 * 170.00083 * 10 9 8 14 14 C 1.50701 * 109.46715 * 284.30799 * 13 10 9 15 15 H 1.07994 * 120.00434 * 4.64469 * 14 13 10 16 16 C 1.37881 * 119.99923 * 184.64375 * 14 13 10 17 17 N 1.31519 * 119.99792 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00218 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47188 * 90.00104 * 18 16 14 20 20 H 1.48502 * 109.47197 * 210.00076 * 18 16 14 21 21 H 1.48505 * 109.47254 * 329.99952 * 18 16 14 22 22 C 1.38023 * 119.33143 * 0.02562 * 8 7 6 23 23 N 1.31980 * 120.85639 * 359.97438 * 22 8 7 24 24 H 1.09001 * 109.47082 * 59.99386 * 1 2 3 25 25 H 1.08999 * 109.47345 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46996 * 299.99839 * 1 2 3 27 27 H 1.09007 * 109.46996 * 240.00161 * 2 1 3 28 28 H 1.08998 * 109.47806 * 120.00646 * 2 1 3 29 29 H 1.09002 * 109.47327 * 269.99765 * 4 3 2 30 30 H 1.08996 * 109.47849 * 29.99862 * 4 3 2 31 31 H 1.09006 * 109.47153 * 150.00208 * 4 3 2 32 32 H 1.08001 * 120.45082 * 359.97438 * 6 5 3 33 33 H 1.08003 * 120.74926 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46875 * 210.00143 * 9 8 7 35 35 H 1.08994 * 109.47196 * 330.00302 * 9 8 7 36 36 H 1.08999 * 109.47540 * 284.21708 * 11 10 9 37 37 H 1.09005 * 109.47312 * 44.22165 * 11 10 9 38 38 H 1.08993 * 109.47156 * 299.61992 * 12 11 10 39 39 H 1.09001 * 109.47145 * 59.62174 * 12 11 10 40 40 H 1.09003 * 109.47665 * 179.61606 * 12 11 10 41 41 H 1.09005 * 109.46544 * 44.30167 * 13 10 9 42 42 H 1.08997 * 109.47408 * 164.30603 * 13 10 9 43 43 H 0.96996 * 119.99736 * 179.97438 * 17 16 14 44 44 H 1.08001 * 119.57728 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 2.2501 2.0364 1.2038 6 6 2.6137 3.3794 1.1990 7 6 2.8418 4.0187 2.4040 8 6 2.6985 3.2908 3.5780 9 6 2.9363 3.9465 4.9139 10 7 1.6778 4.5203 5.4087 11 6 1.2305 5.6261 4.5514 12 6 -0.2388 5.9364 4.8444 13 6 1.8114 4.9575 6.8048 14 6 1.7920 3.7543 7.7119 15 1 1.7663 2.7604 7.2902 16 6 1.8072 3.9223 9.0804 17 7 1.8392 5.1326 9.5939 18 14 1.7839 2.4309 10.2048 19 1 3.1774 2.0050 10.4911 20 1 1.1021 2.7806 11.4769 21 1 1.0537 1.3214 9.5406 22 6 2.3361 1.9608 3.5090 23 7 2.1248 1.3764 2.3447 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.2919 1.9006 -1.5834 30 1 1.5817 1.6879 -2.0283 31 1 2.0956 3.1411 -1.1383 32 1 2.7174 3.9150 0.2670 33 1 3.1249 5.0606 2.4313 34 1 3.3007 3.2037 5.6235 35 1 3.6777 4.7378 4.8034 36 1 1.8356 6.5099 4.7529 37 1 1.3399 5.3417 3.5048 38 1 -0.8449 5.0547 4.6363 39 1 -0.3495 6.2143 5.8925 40 1 -0.5689 6.7614 4.2131 41 1 2.7535 5.4915 6.9296 42 1 0.9827 5.6181 7.0596 43 1 1.8495 5.2508 10.5566 44 1 2.2239 1.3909 4.4195 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361500867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:21 Heat of formation + Delta-G solvation = 30.119593 kcal Electronic energy + Delta-G solvation = -21661.081041 eV Core-core repulsion = 18612.894629 eV Total energy + Delta-G solvation = -3048.186412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30759 -38.85523 -37.47439 -34.77609 -33.49947 -33.01182 -31.71760 -30.71805 -28.89034 -27.38639 -25.74428 -24.78258 -24.12684 -23.35877 -21.67999 -21.26006 -18.54998 -18.37071 -17.57308 -16.86630 -16.57019 -16.16168 -15.85914 -15.59974 -15.39143 -15.07973 -14.82540 -14.50557 -14.21205 -14.08473 -13.84436 -13.67872 -13.35782 -13.25596 -12.98084 -12.87814 -12.68068 -12.62557 -12.53406 -12.39272 -12.13351 -12.04185 -11.85772 -11.46976 -11.26268 -10.74857 -10.56621 -10.52094 -10.24423 -8.94595 -8.35755 -8.15660 -6.24722 0.41666 0.55461 1.42580 1.43584 1.55353 2.08389 2.43298 2.95380 3.16324 3.52839 3.65178 3.97728 4.05573 4.13554 4.23778 4.24747 4.34972 4.38709 4.45149 4.46427 4.59494 4.64481 4.71307 4.75686 4.83848 4.89060 4.92003 4.97819 5.02163 5.07353 5.08843 5.19104 5.28590 5.31323 5.34870 5.37582 5.51175 5.71614 5.74501 6.13771 6.16129 6.44479 6.48233 6.69897 6.90916 7.29035 7.44372 8.94693 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021351 B = 0.004063 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.096703 B = 6889.642606 C = 7545.384724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 N -0.620 5.620 4 C 0.091 3.909 5 C 0.382 3.618 6 C -0.235 4.235 7 C -0.032 4.032 8 C -0.183 4.183 9 C 0.117 3.883 10 N -0.538 5.538 11 C 0.047 3.953 12 C -0.137 4.137 13 C 0.206 3.794 14 C -0.517 4.517 15 H 0.060 0.940 16 C 0.003 3.997 17 N -0.935 5.935 18 Si 0.964 3.036 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.153 3.847 23 N -0.560 5.560 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.145 0.855 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.019 0.981 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.033 0.967 40 H 0.077 0.923 41 H -0.039 1.039 42 H 0.013 0.987 43 H 0.263 0.737 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.680 -5.229 -23.508 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.000 4.000 3 N -0.334 5.334 4 C -0.051 4.051 5 C 0.147 3.853 6 C -0.259 4.259 7 C -0.058 4.058 8 C -0.188 4.188 9 C -0.011 4.011 10 N -0.263 5.263 11 C -0.081 4.081 12 C -0.194 4.194 13 C 0.080 3.920 14 C -0.555 4.555 15 H 0.079 0.921 16 C -0.195 4.195 17 N -0.576 5.576 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.004 4.004 23 N -0.278 5.278 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.176 0.824 33 H 0.162 0.838 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.037 0.963 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.096 0.904 41 H -0.022 1.022 42 H 0.031 0.969 43 H 0.072 0.928 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.057 -6.466 -23.574 24.444 hybrid contribution 0.770 1.081 1.434 1.954 sum 0.827 -5.385 -22.140 22.800 Atomic orbital electron populations 1.22079 0.96285 1.02347 1.01040 1.21373 0.94020 0.81699 1.02919 1.46573 1.70371 1.14137 1.02355 1.21881 1.01803 0.98099 0.83329 1.18678 0.90966 0.88988 0.86651 1.21609 1.10478 0.93947 0.99861 1.21408 0.93528 0.99890 0.90949 1.20436 1.07290 0.95774 0.95342 1.20628 0.90342 0.97501 0.92608 1.62118 1.29772 1.31697 1.02702 1.22157 0.96239 0.91817 0.97859 1.21692 0.95788 1.01212 1.00752 1.19434 0.93314 0.94836 0.84369 1.21479 1.49261 0.93653 0.91104 0.92136 1.25847 0.95059 0.98794 0.99804 1.70081 1.52217 1.22931 1.12410 0.85456 0.78393 0.79376 0.77848 1.19843 1.20861 1.19107 1.22227 0.91657 0.92265 0.94237 1.67170 1.23091 1.39614 0.97891 0.91940 0.90619 0.95285 0.88765 0.91753 0.92219 0.89348 0.90516 0.82374 0.83771 0.91518 0.95210 0.96282 0.89733 0.93097 0.94819 0.90369 1.02159 0.96876 0.92820 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 10.24 71.98 0.74 -2.11 16 2 C 0.12 2.28 6.19 86.38 0.53 2.81 16 3 N -0.62 -12.67 2.99 -728.85 -2.18 -14.85 16 4 C 0.09 1.09 10.28 127.77 1.31 2.40 16 5 C 0.38 10.33 7.37 133.07 0.98 11.31 16 6 C -0.23 -5.60 9.27 22.50 0.21 -5.39 16 7 C -0.03 -0.85 8.00 22.44 0.18 -0.67 16 8 C -0.18 -6.10 4.94 -19.76 -0.10 -6.20 16 9 C 0.12 4.60 4.96 85.56 0.42 5.02 16 10 N -0.54 -23.71 4.37 -905.35 -3.96 -27.66 16 11 C 0.05 1.73 5.52 86.31 0.48 2.21 16 12 C -0.14 -4.82 9.98 71.98 0.72 -4.10 16 13 C 0.21 11.13 4.59 85.56 0.39 11.53 16 14 C -0.52 -29.72 8.61 25.60 0.22 -29.50 16 15 H 0.06 3.44 7.66 -2.91 -0.02 3.41 16 16 C 0.00 0.15 5.46 84.65 0.46 0.61 16 17 N -0.94 -56.94 13.29 21.45 0.28 -56.65 16 18 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 C 0.15 5.26 10.85 84.62 0.92 6.18 16 23 N -0.56 -18.08 9.08 -193.26 -1.75 -19.84 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.09 1.20 8.07 -2.38 -0.02 1.18 16 28 H 0.06 1.50 7.30 -2.39 -0.02 1.48 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.71 8.07 -2.39 -0.02 0.69 16 31 H 0.08 0.82 5.98 -2.38 -0.01 0.80 16 32 H 0.16 2.67 6.03 -2.91 -0.02 2.65 16 33 H 0.14 3.31 7.76 -2.91 -0.02 3.29 16 34 H 0.07 2.86 7.27 -2.39 -0.02 2.85 16 35 H 0.03 1.13 8.07 -2.39 -0.02 1.11 16 36 H 0.02 0.70 8.05 -2.39 -0.02 0.68 16 37 H 0.08 2.69 5.16 -2.38 -0.01 2.68 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.03 1.35 6.52 -2.39 -0.02 1.34 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H -0.04 -2.28 8.00 -2.38 -0.02 -2.30 16 42 H 0.01 0.77 6.23 -2.39 -0.01 0.75 16 43 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 44 H 0.14 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -68.63 352.24 2.85 -65.78 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.96 Total: 11.94 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 7.47 Total: -5.91 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -7.61 Total: -119.00 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -68.63 2.85 -65.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361500867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.900 kcal (2) G-P(sol) polarization free energy of solvation -68.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds