Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46743 * 2 1 4 4 C 1.36938 * 119.99797 * 274.34550 * 3 2 1 5 5 H 1.07997 * 120.00033 * 323.95071 * 4 3 2 6 6 C 1.38813 * 119.99518 * 143.94567 * 4 3 2 7 7 N 1.31608 * 120.00552 * 334.26034 * 6 4 3 8 8 Si 1.86804 * 119.99638 * 154.25640 * 6 4 3 9 9 H 1.48501 * 109.47058 * 89.99954 * 8 6 4 10 10 H 1.48495 * 109.47432 * 210.00091 * 8 6 4 11 11 H 1.48501 * 109.47150 * 330.00505 * 8 6 4 12 12 C 1.46500 * 120.00378 * 94.35345 * 3 2 1 13 13 C 1.50705 * 109.47262 * 89.99583 * 12 3 2 14 14 C 1.38878 * 120.33681 * 90.00324 * 13 12 3 15 15 C 1.38298 * 118.50819 * 180.02562 * 14 13 12 16 16 C 1.39134 * 119.09281 * 359.97438 * 15 14 13 17 17 N 1.39011 * 119.70116 * 179.97438 * 16 15 14 18 18 C 1.46502 * 119.99711 * 191.26355 * 17 16 15 19 19 C 1.46497 * 119.99964 * 11.26690 * 17 16 15 20 20 C 1.53005 * 109.47172 * 125.43902 * 19 17 16 21 21 C 1.53003 * 109.46835 * 245.44048 * 19 17 16 22 22 N 1.32390 * 120.59573 * 359.97438 * 16 15 14 23 23 C 1.31977 * 121.62002 * 0.02562 * 22 16 15 24 24 H 1.08994 * 109.47454 * 60.00401 * 1 2 3 25 25 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47223 * 299.99860 * 1 2 3 27 27 H 1.08993 * 109.47263 * 239.99993 * 2 1 3 28 28 H 1.09000 * 109.47209 * 119.99223 * 2 1 3 29 29 H 0.97000 * 120.00580 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46824 * 329.99867 * 12 3 2 31 31 H 1.08990 * 109.47301 * 209.99794 * 12 3 2 32 32 H 1.08007 * 120.74408 * 359.97438 * 14 13 12 33 33 H 1.08004 * 120.45149 * 180.02562 * 15 14 13 34 34 H 1.08999 * 109.46933 * 90.00164 * 18 17 16 35 35 H 1.08993 * 109.46708 * 209.99947 * 18 17 16 36 36 H 1.09000 * 109.47188 * 329.99874 * 18 17 16 37 37 H 1.09004 * 109.47262 * 5.43469 * 19 17 16 38 38 H 1.08994 * 109.46945 * 59.99970 * 20 19 17 39 39 H 1.09002 * 109.46943 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.46868 * 299.99688 * 20 19 17 41 41 H 1.08992 * 109.47385 * 59.99704 * 21 19 17 42 42 H 1.08999 * 109.47103 * 180.02562 * 21 19 17 43 43 H 1.09004 * 109.46722 * 299.99751 * 21 19 17 44 44 H 1.08001 * 119.57598 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1617 2.0567 -1.1825 5 1 2.4904 1.5323 -2.0675 6 6 1.8844 3.4155 -1.2437 7 7 1.0398 3.9539 -0.3900 8 14 2.7104 4.4799 -2.5376 9 1 1.8737 4.5068 -3.7642 10 1 2.8680 5.8611 -2.0156 11 1 4.0461 3.9179 -2.8620 12 6 2.3532 2.0399 1.2650 13 6 3.8038 1.7935 1.5910 14 6 4.7820 2.6726 1.1452 15 6 6.1014 2.4097 1.4657 16 6 6.4022 1.2801 2.2202 17 7 7.7241 1.0034 2.5492 18 6 8.0793 -0.2967 3.1234 19 6 8.7620 2.0120 2.3218 20 6 9.5205 2.2663 3.6260 21 6 9.7365 1.5093 1.2547 22 7 5.4407 0.4663 2.6277 23 6 4.1734 0.6923 2.3367 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 0.8463 4.9035 -0.4325 30 1 1.7281 1.6360 2.0615 31 1 2.1783 3.1118 1.1740 32 1 4.5184 3.5417 0.5605 33 1 6.8875 3.0728 1.1356 34 1 8.3241 -0.9933 2.3216 35 1 8.9418 -0.1806 3.7797 36 1 7.2364 -0.6835 3.6961 37 1 8.2997 2.9394 1.9836 38 1 9.9829 1.3390 3.9642 39 1 10.2925 3.0171 3.4569 40 1 8.8262 2.6245 4.3862 41 1 9.1962 1.3281 0.3257 42 1 10.5090 2.2595 1.0858 43 1 10.1989 0.5819 1.5930 44 1 3.4157 0.0063 2.6857 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361575827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = 63.128323 kcal Electronic energy + Delta-G solvation = -22081.370726 eV Core-core repulsion = 19034.615680 eV Total energy + Delta-G solvation = -3046.755046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.82334 -37.44878 -35.77038 -32.70858 -31.81602 -31.41813 -30.50333 -28.47550 -27.34213 -26.61437 -24.95545 -23.63068 -22.35421 -21.74280 -20.15275 -19.56549 -17.47617 -16.70002 -16.01415 -14.90348 -14.74978 -14.66599 -14.43676 -14.14329 -13.98706 -13.61197 -13.18910 -13.01723 -12.84133 -12.60626 -12.52403 -12.18754 -12.10934 -11.91541 -11.65284 -11.38780 -11.23417 -11.10445 -11.03117 -10.75327 -10.64883 -10.42804 -10.11767 -9.98372 -9.76899 -9.29022 -9.03078 -8.76405 -8.46139 -7.00121 -6.59841 -5.81883 -3.30827 1.92651 2.18040 3.17604 3.33396 3.42406 3.46808 4.45526 4.56901 4.66636 4.99262 5.04143 5.17844 5.22851 5.30115 5.42793 5.54831 5.63224 5.66145 5.70251 5.71867 5.75858 5.80339 5.86483 5.97559 6.08271 6.13986 6.16472 6.20551 6.28953 6.49703 6.55982 6.65183 6.72467 6.79592 7.03567 7.21523 7.28177 7.32131 7.39085 7.63071 7.83329 7.84404 8.50817 8.72567 9.17666 9.81773 10.40986 11.19232 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.005157 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.025920 B = 5427.978365 C = 6403.726334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 N -0.577 5.577 4 C -0.254 4.254 5 H 0.058 0.942 6 C 0.015 3.985 7 N -0.880 5.880 8 Si 0.883 3.117 9 H -0.285 1.285 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.188 3.812 13 C -0.170 4.170 14 C -0.018 4.018 15 C -0.240 4.240 16 C 0.379 3.621 17 N -0.618 5.618 18 C 0.103 3.897 19 C 0.146 3.854 20 C -0.162 4.162 21 C -0.163 4.163 22 N -0.545 5.545 23 C 0.133 3.867 24 H 0.054 0.946 25 H 0.029 0.971 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.034 0.966 29 H 0.254 0.746 30 H 0.034 0.966 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.394 -3.889 7.033 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 N -0.297 5.297 4 C -0.384 4.384 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.522 5.522 8 Si 0.712 3.288 9 H -0.212 1.212 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.061 3.939 13 C -0.177 4.177 14 C -0.045 4.045 15 C -0.265 4.265 16 C 0.146 3.854 17 N -0.335 5.335 18 C -0.040 4.040 19 C 0.042 3.958 20 C -0.221 4.221 21 C -0.222 4.222 22 N -0.262 5.262 23 C -0.023 4.023 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 13.656 -4.503 7.569 16.250 hybrid contribution 0.219 1.337 -1.286 1.868 sum 13.875 -3.166 6.283 15.557 Atomic orbital electron populations 1.22248 0.99522 0.98231 1.02012 1.20852 0.91992 0.87357 0.98058 1.43820 1.73126 1.10026 1.02748 1.18957 1.38834 0.91541 0.89027 0.92441 1.25024 0.96977 0.98841 0.97760 1.70078 1.31297 1.11903 1.38911 0.86619 0.80300 0.80069 0.81860 1.21220 1.21384 1.20271 1.19758 0.85716 1.01642 0.86759 1.21911 1.00870 0.95824 0.99077 1.21262 0.91165 0.98137 0.93894 1.21378 0.97742 1.00806 1.06529 1.18133 0.84962 0.90688 0.91607 1.46122 1.02874 1.15283 1.69202 1.21392 1.00834 0.84350 0.97442 1.20971 0.88085 0.91837 0.94901 1.22183 1.00354 1.01812 0.97722 1.22199 0.99176 1.01473 0.99338 1.67014 1.00910 1.32146 1.26122 1.22195 0.90757 0.94979 0.94393 0.92649 0.95211 0.93735 0.94477 0.94755 0.93574 0.94752 0.88566 0.85476 0.86214 0.94471 0.92549 0.90504 0.89153 0.92293 0.91667 0.92247 0.92153 0.91858 0.92524 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 10.22 37.16 0.38 -2.85 16 2 C 0.14 3.05 6.39 -4.04 -0.03 3.02 16 3 N -0.58 -14.05 2.42 -174.61 -0.42 -14.47 16 4 C -0.25 -6.79 9.44 -15.06 -0.14 -6.93 16 5 H 0.06 1.58 7.95 -52.49 -0.42 1.16 16 6 C 0.01 0.39 4.85 -17.43 -0.08 0.30 16 7 N -0.88 -24.47 11.65 55.49 0.65 -23.82 16 8 Si 0.88 20.98 29.62 -169.99 -5.04 15.94 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.19 4.29 5.43 -5.19 -0.03 4.26 16 13 C -0.17 -3.51 5.48 -104.46 -0.57 -4.08 16 14 C -0.02 -0.36 9.85 -39.32 -0.39 -0.75 16 15 C -0.24 -4.28 9.24 -39.23 -0.36 -4.64 16 16 C 0.38 6.65 7.33 -155.02 -1.14 5.51 16 17 N -0.62 -8.74 2.88 -174.08 -0.50 -9.24 16 18 C 0.10 1.27 9.83 59.85 0.59 1.86 16 19 C 0.15 1.65 3.10 -67.93 -0.21 1.44 16 20 C -0.16 -1.49 9.06 37.16 0.34 -1.15 16 21 C -0.16 -1.61 9.27 37.16 0.34 -1.27 16 22 N -0.55 -10.19 9.08 -12.44 -0.11 -10.30 16 23 C 0.13 2.54 10.85 -17.57 -0.19 2.35 16 24 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 28 H 0.03 0.66 8.04 -51.93 -0.42 0.24 16 29 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.03 0.74 8.02 -51.93 -0.42 0.32 16 31 H 0.10 2.47 5.54 -51.93 -0.29 2.18 16 32 H 0.13 2.65 8.06 -52.48 -0.42 2.23 16 33 H 0.12 1.84 5.99 -52.48 -0.31 1.53 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.56 6.16 -51.93 -0.32 0.24 16 36 H 0.08 1.05 7.24 -51.93 -0.38 0.67 16 37 H 0.09 1.06 5.52 -51.93 -0.29 0.77 16 38 H 0.06 0.50 6.51 -51.93 -0.34 0.16 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.53 7.81 -51.93 -0.41 0.12 16 44 H 0.14 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -29.03 353.71 -8.95 -37.98 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.36 Total: 1.51 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -1.49 Total: -2.92 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.39 Total: -57.84 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.04 Total: 15.94 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.03 -8.95 -37.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361575827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.105 kcal (2) G-P(sol) polarization free energy of solvation -29.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds