Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46743 * 2 1 4 4 C 1.36938 * 119.99797 * 274.34550 * 3 2 1 5 5 H 1.07997 * 120.00033 * 323.95071 * 4 3 2 6 6 C 1.38813 * 119.99518 * 143.94567 * 4 3 2 7 7 N 1.31608 * 120.00552 * 334.26034 * 6 4 3 8 8 Si 1.86804 * 119.99638 * 154.25640 * 6 4 3 9 9 H 1.48501 * 109.47058 * 89.99954 * 8 6 4 10 10 H 1.48495 * 109.47432 * 210.00091 * 8 6 4 11 11 H 1.48501 * 109.47150 * 330.00505 * 8 6 4 12 12 C 1.46500 * 120.00378 * 94.35345 * 3 2 1 13 13 C 1.50705 * 109.47262 * 89.99583 * 12 3 2 14 14 C 1.38878 * 120.33681 * 90.00324 * 13 12 3 15 15 C 1.38298 * 118.50819 * 180.02562 * 14 13 12 16 16 C 1.39134 * 119.09281 * 359.97438 * 15 14 13 17 17 N 1.39011 * 119.70116 * 179.97438 * 16 15 14 18 18 C 1.46502 * 119.99711 * 191.26355 * 17 16 15 19 19 C 1.46497 * 119.99964 * 11.26690 * 17 16 15 20 20 C 1.53005 * 109.47172 * 125.43902 * 19 17 16 21 21 C 1.53003 * 109.46835 * 245.44048 * 19 17 16 22 22 N 1.32390 * 120.59573 * 359.97438 * 16 15 14 23 23 C 1.31977 * 121.62002 * 0.02562 * 22 16 15 24 24 H 1.08994 * 109.47454 * 60.00401 * 1 2 3 25 25 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47223 * 299.99860 * 1 2 3 27 27 H 1.08993 * 109.47263 * 239.99993 * 2 1 3 28 28 H 1.09000 * 109.47209 * 119.99223 * 2 1 3 29 29 H 0.97000 * 120.00580 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46824 * 329.99867 * 12 3 2 31 31 H 1.08990 * 109.47301 * 209.99794 * 12 3 2 32 32 H 1.08007 * 120.74408 * 359.97438 * 14 13 12 33 33 H 1.08004 * 120.45149 * 180.02562 * 15 14 13 34 34 H 1.08999 * 109.46933 * 90.00164 * 18 17 16 35 35 H 1.08993 * 109.46708 * 209.99947 * 18 17 16 36 36 H 1.09000 * 109.47188 * 329.99874 * 18 17 16 37 37 H 1.09004 * 109.47262 * 5.43469 * 19 17 16 38 38 H 1.08994 * 109.46945 * 59.99970 * 20 19 17 39 39 H 1.09002 * 109.46943 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.46868 * 299.99688 * 20 19 17 41 41 H 1.08992 * 109.47385 * 59.99704 * 21 19 17 42 42 H 1.08999 * 109.47103 * 180.02562 * 21 19 17 43 43 H 1.09004 * 109.46722 * 299.99751 * 21 19 17 44 44 H 1.08001 * 119.57598 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1617 2.0567 -1.1825 5 1 2.4904 1.5323 -2.0675 6 6 1.8844 3.4155 -1.2437 7 7 1.0398 3.9539 -0.3900 8 14 2.7104 4.4799 -2.5376 9 1 1.8737 4.5068 -3.7642 10 1 2.8680 5.8611 -2.0156 11 1 4.0461 3.9179 -2.8620 12 6 2.3532 2.0399 1.2650 13 6 3.8038 1.7935 1.5910 14 6 4.7820 2.6726 1.1452 15 6 6.1014 2.4097 1.4657 16 6 6.4022 1.2801 2.2202 17 7 7.7241 1.0034 2.5492 18 6 8.0793 -0.2967 3.1234 19 6 8.7620 2.0120 2.3218 20 6 9.5205 2.2663 3.6260 21 6 9.7365 1.5093 1.2547 22 7 5.4407 0.4663 2.6277 23 6 4.1734 0.6923 2.3367 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 0.8463 4.9035 -0.4325 30 1 1.7281 1.6360 2.0615 31 1 2.1783 3.1118 1.1740 32 1 4.5184 3.5417 0.5605 33 1 6.8875 3.0728 1.1356 34 1 8.3241 -0.9933 2.3216 35 1 8.9418 -0.1806 3.7797 36 1 7.2364 -0.6835 3.6961 37 1 8.2997 2.9394 1.9836 38 1 9.9829 1.3390 3.9642 39 1 10.2925 3.0171 3.4569 40 1 8.8262 2.6245 4.3862 41 1 9.1962 1.3281 0.3257 42 1 10.5090 2.2595 1.0858 43 1 10.1989 0.5819 1.5930 44 1 3.4157 0.0063 2.6857 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361575827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = 49.479054 kcal Electronic energy + Delta-G solvation = -22081.962603 eV Core-core repulsion = 19034.615680 eV Total energy + Delta-G solvation = -3047.346923 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.20818 -38.67511 -37.46119 -34.00984 -33.75149 -32.76621 -31.89871 -30.15602 -28.18349 -27.92038 -26.51002 -25.35481 -23.82364 -23.12421 -21.81836 -20.78769 -18.81406 -18.46309 -17.41500 -16.65380 -16.02695 -15.98694 -15.86620 -15.64000 -15.58533 -15.11266 -14.44888 -14.30116 -14.07439 -13.94054 -13.83845 -13.68295 -13.20224 -13.13824 -12.92136 -12.84430 -12.72122 -12.52141 -12.40760 -12.26683 -12.20182 -12.07403 -11.78728 -11.63676 -11.51543 -10.64370 -10.54150 -10.48292 -10.21722 -8.56547 -8.29139 -7.82979 -5.35971 0.45984 0.67287 1.42327 1.46861 1.55665 2.05997 2.52138 3.05102 3.26118 3.64808 3.90256 3.93163 4.08777 4.16479 4.20040 4.34801 4.41789 4.44288 4.48342 4.59039 4.74198 4.75223 4.76504 4.79843 4.84752 4.91193 4.94693 5.00928 5.03166 5.04845 5.12836 5.21808 5.31797 5.33314 5.37356 5.55778 5.63732 5.76102 5.81983 5.83630 6.22615 6.48678 6.54606 7.19046 7.30335 7.89314 8.42977 9.14617 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.005157 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.025920 B = 5427.978365 C = 6403.726334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.139 3.861 3 N -0.592 5.592 4 C -0.262 4.262 5 H 0.045 0.955 6 C -0.023 4.023 7 N -0.907 5.907 8 Si 0.937 3.063 9 H -0.285 1.285 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.198 3.802 13 C -0.190 4.190 14 C -0.031 4.031 15 C -0.241 4.241 16 C 0.379 3.621 17 N -0.614 5.614 18 C 0.101 3.899 19 C 0.137 3.863 20 C -0.155 4.155 21 C -0.157 4.157 22 N -0.554 5.554 23 C 0.139 3.861 24 H 0.026 0.974 25 H 0.065 0.935 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.057 0.943 29 H 0.252 0.748 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.142 0.858 34 H 0.040 0.960 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.828 -4.737 7.727 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.014 3.986 3 N -0.312 5.312 4 C -0.392 4.392 5 H 0.063 0.937 6 C -0.221 4.221 7 N -0.550 5.550 8 Si 0.765 3.235 9 H -0.212 1.212 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.071 3.929 13 C -0.197 4.197 14 C -0.058 4.058 15 C -0.265 4.265 16 C 0.145 3.855 17 N -0.330 5.330 18 C -0.042 4.042 19 C 0.033 3.967 20 C -0.213 4.213 21 C -0.215 4.215 22 N -0.271 5.271 23 C -0.018 4.018 24 H 0.045 0.955 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.160 0.840 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 16.140 -5.368 8.274 18.915 hybrid contribution -0.413 1.530 -1.441 2.142 sum 15.727 -3.838 6.834 17.571 Atomic orbital electron populations 1.22099 0.98655 0.99959 1.00070 1.20981 0.92640 0.86050 0.98978 1.44023 1.73817 1.10923 1.02470 1.19040 1.38423 0.92067 0.89670 0.93688 1.25543 0.97421 0.99609 0.99547 1.70171 1.32549 1.11783 1.40544 0.85774 0.79331 0.78619 0.79792 1.21219 1.21250 1.20079 1.19522 0.87418 0.99603 0.86346 1.21634 0.99515 0.97309 1.01274 1.21224 0.92400 0.97830 0.94362 1.21526 0.97231 1.01410 1.06333 1.18449 0.86295 0.90108 0.90687 1.46480 1.02006 1.16502 1.68029 1.21507 1.01406 0.83431 0.97829 1.21262 0.87781 0.90900 0.96707 1.22125 1.00294 1.02989 0.95895 1.22145 0.99057 1.02587 0.97748 1.67126 1.00856 1.32540 1.26592 1.22342 0.91473 0.94416 0.93546 0.95507 0.91585 0.94616 0.94746 0.92503 0.93888 0.94161 0.91705 0.87176 0.84026 0.94123 0.89586 0.91876 0.89820 0.91232 0.89502 0.93418 0.94049 0.89605 0.91684 0.82358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.89 10.22 71.98 0.74 -5.16 16 2 C 0.14 5.84 6.39 86.38 0.55 6.39 16 3 N -0.59 -29.25 2.42 -706.35 -1.71 -30.96 16 4 C -0.26 -14.30 9.44 84.03 0.79 -13.51 16 5 H 0.05 2.53 7.95 -2.91 -0.02 2.51 16 6 C -0.02 -1.25 4.85 84.86 0.41 -0.84 16 7 N -0.91 -51.89 11.65 21.65 0.25 -51.64 16 8 Si 0.94 44.02 29.62 68.60 2.03 46.05 16 9 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.20 9.23 5.43 85.63 0.47 9.70 16 13 C -0.19 -7.95 5.48 -19.76 -0.11 -8.06 16 14 C -0.03 -1.28 9.85 22.44 0.22 -1.06 16 15 C -0.24 -8.40 9.24 22.50 0.21 -8.19 16 16 C 0.38 12.79 7.33 133.06 0.98 13.77 16 17 N -0.61 -15.99 2.88 -704.67 -2.03 -18.02 16 18 C 0.10 2.22 9.83 127.77 1.26 3.47 16 19 C 0.14 2.70 3.10 44.99 0.14 2.84 16 20 C -0.16 -2.30 9.06 71.98 0.65 -1.65 16 21 C -0.16 -2.62 9.27 71.98 0.67 -1.95 16 22 N -0.55 -20.04 9.08 -193.26 -1.75 -21.79 16 23 C 0.14 5.20 10.85 84.62 0.92 6.12 16 24 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 28 H 0.06 2.11 8.04 -2.39 -0.02 2.10 16 29 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.04 1.77 8.02 -2.39 -0.02 1.75 16 31 H 0.07 3.46 5.54 -2.39 -0.01 3.45 16 32 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 33 H 0.14 4.19 5.99 -2.91 -0.02 4.17 16 34 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.38 6.16 -2.39 -0.01 1.36 16 36 H 0.06 1.59 7.24 -2.39 -0.02 1.57 16 37 H 0.08 1.77 5.52 -2.38 -0.01 1.75 16 38 H 0.07 0.89 6.51 -2.39 -0.02 0.88 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 0.98 7.81 -2.38 -0.02 0.96 16 44 H 0.16 5.27 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -63.09 353.71 5.63 -57.46 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.96 Total: 17.05 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 7.89 Total: 1.85 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -5.24 Total: -122.41 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -63.09 5.63 -57.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361575827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.938 kcal (2) G-P(sol) polarization free energy of solvation -63.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds