Wall clock time and date at job start Mon Mar 30 2020 02:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34948 * 126.03291 * 2 1 4 4 C 1.35318 * 107.75053 * 180.14452 * 3 2 1 5 5 C 1.50693 * 126.04628 * 179.87035 * 4 3 2 6 6 C 1.52996 * 109.47545 * 269.72173 * 5 4 3 7 7 H 1.09004 * 110.63933 * 303.30029 * 6 5 4 8 8 C 1.54600 * 110.72452 * 66.44822 * 6 5 4 9 9 C 1.53992 * 105.13532 * 140.31864 * 8 6 5 10 10 N 1.47895 * 107.06387 * 1.22856 * 9 8 6 11 11 C 1.46905 * 111.00216 * 214.15769 * 10 9 8 12 12 C 1.52995 * 109.47209 * 175.70477 * 11 10 9 13 13 C 1.53000 * 109.47226 * 174.85887 * 12 11 10 14 14 C 1.50700 * 109.47400 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99915 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99893 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99971 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99721 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47508 * 270.00078 * 18 16 14 20 20 H 1.48506 * 109.47115 * 30.00162 * 18 16 14 21 21 H 1.48507 * 109.46990 * 149.99698 * 18 16 14 22 22 C 1.48535 * 105.81782 * 334.66819 * 10 9 8 23 23 C 1.39872 * 107.91572 * 359.61108 * 4 3 2 24 24 N 1.30840 * 108.19994 * 0.24277 * 23 4 3 25 25 H 1.08999 * 109.47469 * 270.25350 * 1 2 3 26 26 H 1.08994 * 109.47698 * 30.26572 * 1 2 3 27 27 H 1.09007 * 109.46507 * 150.26025 * 1 2 3 28 28 H 1.08008 * 126.12990 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.47593 * 149.71482 * 5 4 3 30 30 H 1.09002 * 109.46675 * 29.71939 * 5 4 3 31 31 H 1.08994 * 110.30997 * 21.40478 * 8 6 5 32 32 H 1.08998 * 110.30771 * 259.23387 * 8 6 5 33 33 H 1.09001 * 109.91496 * 241.87043 * 9 8 6 34 34 H 1.09013 * 109.91654 * 120.58083 * 9 8 6 35 35 H 1.08995 * 109.47162 * 55.70299 * 11 10 9 36 36 H 1.08997 * 109.47131 * 295.70433 * 11 10 9 37 37 H 1.08999 * 109.47150 * 54.85735 * 12 11 10 38 38 H 1.09002 * 109.47236 * 294.85571 * 12 11 10 39 39 H 1.08999 * 109.47181 * 59.99866 * 13 12 11 40 40 H 1.09002 * 109.46754 * 299.99979 * 13 12 11 41 41 H 0.97000 * 120.00083 * 359.97438 * 17 16 14 42 42 H 1.09003 * 110.67118 * 157.64262 * 22 10 9 43 43 H 1.08999 * 110.66815 * 280.77198 * 22 10 9 44 44 H 1.08000 * 125.89779 * 180.21800 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6668 -0.0033 5 6 4.7679 1.5456 -0.0072 6 6 5.1824 1.8364 -1.4509 7 1 5.3547 0.9080 -1.9956 8 6 4.1151 2.6986 -2.1634 9 6 4.9130 3.7017 -3.0170 10 7 6.3465 3.3973 -2.8178 11 6 7.1555 4.6229 -2.8573 12 6 8.6133 4.2821 -2.5420 13 6 9.4772 5.5338 -2.7084 14 6 10.9132 5.1981 -2.3984 15 1 11.1827 4.1925 -2.1110 16 6 11.8828 6.1749 -2.4807 17 7 11.5545 7.3995 -2.8302 18 14 13.6627 5.7588 -2.0958 19 1 13.9199 5.9747 -0.6492 20 1 13.9240 4.3376 -2.4383 21 1 14.5592 6.6332 -2.8939 22 6 6.4400 2.7404 -1.4889 23 6 3.5348 -0.7319 0.0037 24 7 2.2892 -1.1326 0.0056 25 1 -0.3634 0.0045 1.0276 26 1 -0.3634 0.8875 -0.5179 27 1 -0.3632 -0.8924 -0.5098 28 1 1.9280 2.1195 -0.0004 29 1 5.5820 1.0369 0.5092 30 1 4.5439 2.4828 0.5023 31 1 3.5047 3.2267 -1.4310 32 1 3.4881 2.0746 -2.8003 33 1 4.7005 4.7194 -2.6895 34 1 4.6512 3.5850 -4.0688 35 1 6.7797 5.3303 -2.1182 36 1 7.0930 5.0676 -3.8505 37 1 8.9612 3.5071 -3.2250 38 1 8.6886 3.9225 -1.5158 39 1 9.1293 6.3088 -2.0254 40 1 9.4018 5.8934 -3.7346 41 1 10.6303 7.6154 -3.0304 42 1 7.3474 2.1404 -1.4193 43 1 6.4054 3.4813 -0.6902 44 1 4.4056 -1.3707 0.0066 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362881334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:10 Heat of formation + Delta-G solvation = 57.951116 kcal Electronic energy + Delta-G solvation = -20898.452420 eV Core-core repulsion = 17851.472873 eV Total energy + Delta-G solvation = -3046.979547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.45230 -39.02112 -35.14189 -33.93245 -32.96563 -31.57706 -29.74459 -29.11666 -27.54656 -25.83272 -24.78492 -22.73935 -21.41459 -21.10744 -20.81190 -19.92303 -19.68726 -16.95766 -16.71027 -15.98985 -15.76896 -15.07383 -14.79762 -14.69113 -13.89447 -13.72614 -13.60429 -13.52066 -13.16466 -13.05791 -12.84567 -12.57430 -12.40036 -12.10693 -12.02242 -11.48349 -11.13795 -11.09478 -10.74364 -10.68499 -10.65046 -10.53513 -10.37517 -10.08616 -9.76791 -9.66684 -9.65208 -8.55245 -8.47768 -8.27198 -8.14427 -6.31143 -3.99320 1.64364 2.26490 2.58682 3.46642 3.50859 3.66596 4.20247 4.25431 4.55222 4.59221 4.63789 4.73858 4.75808 4.85122 4.96410 5.00219 5.19473 5.28187 5.38189 5.46122 5.48000 5.58929 5.68593 5.72870 5.78165 5.79973 5.84232 5.89934 5.99443 6.09986 6.22574 6.26743 6.35218 6.44859 6.59703 6.71355 6.74845 6.98991 7.20284 7.36150 7.45671 7.48571 7.62267 8.29065 8.52870 8.94583 9.72878 11.09638 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038479 B = 0.002614 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.496951 B =10707.699405 C =11190.415213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.380 5.380 3 C 0.054 3.946 4 C -0.225 4.225 5 C -0.033 4.033 6 C -0.085 4.085 7 H 0.082 0.918 8 C -0.119 4.119 9 C 0.033 3.967 10 N -0.518 5.518 11 C 0.048 3.952 12 C -0.099 4.099 13 C 0.008 3.992 14 C -0.598 4.598 15 H 0.049 0.951 16 C 0.012 3.988 17 N -0.916 5.916 18 Si 1.071 2.929 19 H -0.288 1.288 20 H -0.288 1.288 21 H -0.285 1.285 22 C 0.041 3.959 23 C 0.053 3.947 24 N -0.301 5.301 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.170 0.830 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.004 0.996 40 H 0.007 0.993 41 H 0.268 0.732 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.149 -12.973 5.877 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.163 5.163 3 C -0.092 4.092 4 C -0.237 4.237 5 C -0.072 4.072 6 C -0.104 4.104 7 H 0.100 0.900 8 C -0.157 4.157 9 C -0.095 4.095 10 N -0.242 5.242 11 C -0.080 4.080 12 C -0.137 4.137 13 C -0.029 4.029 14 C -0.637 4.637 15 H 0.067 0.933 16 C -0.191 4.191 17 N -0.553 5.553 18 Si 0.900 3.100 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.210 1.210 22 C -0.087 4.087 23 C -0.133 4.133 24 N -0.122 5.122 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.187 0.813 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.022 0.978 40 H 0.025 0.975 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.062 0.938 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -22.394 -13.663 5.535 26.811 hybrid contribution -1.445 0.741 0.493 1.697 sum -23.839 -12.923 6.028 27.778 Atomic orbital electron populations 1.21824 0.74434 1.04420 1.03221 1.48430 1.06516 1.03925 1.57405 1.22315 0.90950 0.93165 1.02738 1.20089 0.94493 0.93943 1.15143 1.19909 0.93614 0.97754 0.95936 1.22096 0.94328 0.98731 0.95243 0.90007 1.22402 0.97632 0.97222 0.98411 1.22863 0.88964 0.97382 1.00308 1.64812 1.06023 1.24547 1.28798 1.22462 0.95237 0.89682 1.00632 1.21516 0.91455 1.00444 1.00262 1.19207 0.95146 0.92672 0.95896 1.22086 0.93049 0.98096 1.50435 0.93299 1.25866 1.05377 0.93430 0.94454 1.70750 1.21429 1.19744 1.43328 0.83513 0.74817 0.75124 0.76549 1.21511 1.21459 1.21030 1.23263 0.98222 0.96736 0.90490 1.23837 0.95116 0.94724 0.99658 1.77339 1.01813 1.08327 1.24767 0.90905 0.89564 0.89389 0.81305 0.90754 0.91481 0.91991 0.91709 0.94170 0.90913 0.95448 0.91261 0.92377 0.93349 0.97802 0.97511 0.92150 0.89858 0.93755 0.80070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.47 59.85 0.69 1.19 16 2 N -0.38 -3.47 4.01 -68.16 -0.27 -3.75 16 3 C 0.05 0.46 10.89 -17.22 -0.19 0.27 16 4 C -0.23 -2.16 5.01 -105.05 -0.53 -2.69 16 5 C -0.03 -0.31 5.10 -27.89 -0.14 -0.45 16 6 C -0.08 -0.92 3.08 -88.76 -0.27 -1.20 16 7 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 8 C -0.12 -1.24 5.77 -25.37 -0.15 -1.39 16 9 C 0.03 0.42 6.70 -2.76 -0.02 0.40 16 10 N -0.52 -8.08 5.35 -230.46 -1.23 -9.32 16 11 C 0.05 0.86 4.84 -3.82 -0.02 0.84 16 12 C -0.10 -2.13 4.83 -26.73 -0.13 -2.26 16 13 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 14 C -0.60 -17.56 9.11 -34.44 -0.31 -17.87 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 16 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 17 N -0.92 -28.71 13.65 55.43 0.76 -27.96 16 18 Si 1.07 25.90 29.90 -169.99 -5.08 20.82 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.04 0.56 4.81 -1.90 -0.01 0.55 16 23 C 0.05 0.54 11.96 -17.36 -0.21 0.33 16 24 N -0.30 -3.45 12.58 30.63 0.39 -3.06 16 25 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.06 0.57 7.64 -51.93 -0.40 0.17 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.51 7.67 -51.93 -0.40 0.11 16 34 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 35 H 0.03 0.49 7.97 -51.93 -0.41 0.08 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.05 1.02 7.18 -51.93 -0.37 0.65 16 39 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 40 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 41 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 42 H 0.08 1.20 7.77 -51.93 -0.40 0.80 16 43 H 0.04 0.62 7.92 -51.93 -0.41 0.21 16 44 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -34.14 354.73 -9.40 -43.55 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -7.79 Total: -3.73 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -1.50 Total: -21.90 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.37 Total: -44.08 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.08 Total: 20.82 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.14 -9.40 -43.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362881334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.496 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds