Wall clock time and date at job start Mon Mar 30 2020 02:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34948 * 126.03291 * 2 1 4 4 C 1.35318 * 107.75053 * 180.14452 * 3 2 1 5 5 C 1.50693 * 126.04628 * 179.87035 * 4 3 2 6 6 C 1.52996 * 109.47545 * 269.72173 * 5 4 3 7 7 H 1.09004 * 110.63933 * 303.30029 * 6 5 4 8 8 C 1.54600 * 110.72452 * 66.44822 * 6 5 4 9 9 C 1.53992 * 105.13532 * 140.31864 * 8 6 5 10 10 N 1.47895 * 107.06387 * 1.22856 * 9 8 6 11 11 C 1.46905 * 111.00216 * 214.15769 * 10 9 8 12 12 C 1.52995 * 109.47209 * 175.70477 * 11 10 9 13 13 C 1.53000 * 109.47226 * 174.85887 * 12 11 10 14 14 C 1.50700 * 109.47400 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99915 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99893 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99971 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99721 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47508 * 270.00078 * 18 16 14 20 20 H 1.48506 * 109.47115 * 30.00162 * 18 16 14 21 21 H 1.48507 * 109.46990 * 149.99698 * 18 16 14 22 22 C 1.48535 * 105.81782 * 334.66819 * 10 9 8 23 23 C 1.39872 * 107.91572 * 359.61108 * 4 3 2 24 24 N 1.30840 * 108.19994 * 0.24277 * 23 4 3 25 25 H 1.08999 * 109.47469 * 270.25350 * 1 2 3 26 26 H 1.08994 * 109.47698 * 30.26572 * 1 2 3 27 27 H 1.09007 * 109.46507 * 150.26025 * 1 2 3 28 28 H 1.08008 * 126.12990 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.47593 * 149.71482 * 5 4 3 30 30 H 1.09002 * 109.46675 * 29.71939 * 5 4 3 31 31 H 1.08994 * 110.30997 * 21.40478 * 8 6 5 32 32 H 1.08998 * 110.30771 * 259.23387 * 8 6 5 33 33 H 1.09001 * 109.91496 * 241.87043 * 9 8 6 34 34 H 1.09013 * 109.91654 * 120.58083 * 9 8 6 35 35 H 1.08995 * 109.47162 * 55.70299 * 11 10 9 36 36 H 1.08997 * 109.47131 * 295.70433 * 11 10 9 37 37 H 1.08999 * 109.47150 * 54.85735 * 12 11 10 38 38 H 1.09002 * 109.47236 * 294.85571 * 12 11 10 39 39 H 1.08999 * 109.47181 * 59.99866 * 13 12 11 40 40 H 1.09002 * 109.46754 * 299.99979 * 13 12 11 41 41 H 0.97000 * 120.00083 * 359.97438 * 17 16 14 42 42 H 1.09003 * 110.67118 * 157.64262 * 22 10 9 43 43 H 1.08999 * 110.66815 * 280.77198 * 22 10 9 44 44 H 1.08000 * 125.89779 * 180.21800 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6668 -0.0033 5 6 4.7679 1.5456 -0.0072 6 6 5.1824 1.8364 -1.4509 7 1 5.3547 0.9080 -1.9956 8 6 4.1151 2.6986 -2.1634 9 6 4.9130 3.7017 -3.0170 10 7 6.3465 3.3973 -2.8178 11 6 7.1555 4.6229 -2.8573 12 6 8.6133 4.2821 -2.5420 13 6 9.4772 5.5338 -2.7084 14 6 10.9132 5.1981 -2.3984 15 1 11.1827 4.1925 -2.1110 16 6 11.8828 6.1749 -2.4807 17 7 11.5545 7.3995 -2.8302 18 14 13.6627 5.7588 -2.0958 19 1 13.9199 5.9747 -0.6492 20 1 13.9240 4.3376 -2.4383 21 1 14.5592 6.6332 -2.8939 22 6 6.4400 2.7404 -1.4889 23 6 3.5348 -0.7319 0.0037 24 7 2.2892 -1.1326 0.0056 25 1 -0.3634 0.0045 1.0276 26 1 -0.3634 0.8875 -0.5179 27 1 -0.3632 -0.8924 -0.5098 28 1 1.9280 2.1195 -0.0004 29 1 5.5820 1.0369 0.5092 30 1 4.5439 2.4828 0.5023 31 1 3.5047 3.2267 -1.4310 32 1 3.4881 2.0746 -2.8003 33 1 4.7005 4.7194 -2.6895 34 1 4.6512 3.5850 -4.0688 35 1 6.7797 5.3303 -2.1182 36 1 7.0930 5.0676 -3.8505 37 1 8.9612 3.5071 -3.2250 38 1 8.6886 3.9225 -1.5158 39 1 9.1293 6.3088 -2.0254 40 1 9.4018 5.8934 -3.7346 41 1 10.6303 7.6154 -3.0304 42 1 7.3474 2.1404 -1.4193 43 1 6.4054 3.4813 -0.6902 44 1 4.4056 -1.3707 0.0066 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362881334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:09 Heat of formation + Delta-G solvation = 36.619485 kcal Electronic energy + Delta-G solvation = -20899.377429 eV Core-core repulsion = 17851.472873 eV Total energy + Delta-G solvation = -3047.904556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.11740 -40.11736 -36.68702 -35.29554 -34.03856 -32.93391 -30.86032 -30.17818 -28.30324 -27.40836 -25.81097 -24.51878 -22.58266 -22.12499 -21.68083 -21.16073 -20.59798 -18.91410 -17.56070 -17.05984 -16.52161 -16.18703 -16.08938 -15.64939 -15.33675 -15.26347 -14.95914 -14.34425 -14.21212 -14.02252 -13.82903 -13.63651 -13.52274 -13.19694 -13.12319 -12.84825 -12.70805 -12.40860 -12.11234 -12.00892 -11.94880 -11.69740 -11.63677 -11.52956 -11.43076 -11.27635 -10.65729 -10.54380 -10.32814 -9.37893 -9.21136 -8.69631 -6.39600 0.99846 1.52364 1.62149 1.74466 1.80188 1.87615 2.56773 3.06350 3.15399 3.63895 3.75531 3.78292 3.99720 4.07459 4.14412 4.29777 4.32521 4.37595 4.44445 4.52009 4.53385 4.59089 4.64055 4.69720 4.70164 4.81856 4.87495 4.91652 4.93079 4.99918 5.02468 5.05738 5.14147 5.19637 5.38709 5.42262 5.49881 5.52759 5.75650 5.97556 6.01825 6.11252 6.18821 6.19786 6.58140 6.77990 7.42387 8.71344 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038479 B = 0.002614 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.496951 B =10707.699405 C =11190.415213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.384 5.384 3 C 0.060 3.940 4 C -0.241 4.241 5 C -0.023 4.023 6 C -0.073 4.073 7 H 0.073 0.927 8 C -0.109 4.109 9 C 0.030 3.970 10 N -0.532 5.532 11 C 0.061 3.939 12 C -0.083 4.083 13 C 0.009 3.991 14 C -0.618 4.618 15 H 0.049 0.951 16 C -0.042 4.042 17 N -0.938 5.938 18 Si 1.121 2.879 19 H -0.270 1.270 20 H -0.269 1.269 21 H -0.282 1.282 22 C 0.037 3.963 23 C 0.040 3.960 24 N -0.339 5.339 25 H 0.084 0.916 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.199 0.801 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.051 0.949 39 H -0.012 1.012 40 H -0.012 1.012 41 H 0.255 0.745 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.238 -13.528 6.667 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.166 5.166 3 C -0.087 4.087 4 C -0.252 4.252 5 C -0.062 4.062 6 C -0.093 4.093 7 H 0.092 0.908 8 C -0.147 4.147 9 C -0.098 4.098 10 N -0.256 5.256 11 C -0.068 4.068 12 C -0.121 4.121 13 C -0.028 4.028 14 C -0.656 4.656 15 H 0.068 0.932 16 C -0.239 4.239 17 N -0.576 5.576 18 Si 0.942 3.058 19 H -0.196 1.196 20 H -0.194 1.194 21 H -0.207 1.207 22 C -0.090 4.090 23 C -0.145 4.145 24 N -0.162 5.162 25 H 0.102 0.898 26 H 0.131 0.869 27 H 0.105 0.895 28 H 0.216 0.784 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.007 0.993 40 H 0.006 0.994 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -23.529 -14.242 6.326 28.222 hybrid contribution -1.191 0.914 0.231 1.519 sum -24.720 -13.328 6.557 28.840 Atomic orbital electron populations 1.22150 0.72371 1.05752 1.04427 1.48780 1.07804 1.03495 1.56517 1.22786 0.90599 0.94225 1.01043 1.20139 0.95029 0.93610 1.16443 1.19794 0.93702 0.98111 0.94619 1.21987 0.93044 0.97736 0.96495 0.90830 1.22363 0.97250 0.96600 0.98449 1.22955 0.87350 0.98362 1.01119 1.64757 1.07622 1.23090 1.30106 1.22171 0.93460 0.90907 1.00233 1.21273 0.93059 0.97606 1.00179 1.19152 0.95166 0.94355 0.94143 1.22516 0.94626 0.98241 1.50201 0.93216 1.27512 1.10073 0.92831 0.93469 1.70888 1.20668 1.20910 1.45121 0.82892 0.69579 0.75938 0.77394 1.19561 1.19424 1.20707 1.23303 0.99290 0.96928 0.89508 1.24131 0.95306 0.95539 0.99497 1.77278 1.02576 1.10024 1.26303 0.89760 0.86894 0.89452 0.78432 0.90716 0.90690 0.89929 0.91035 0.93865 0.90670 0.95287 0.91872 0.93268 0.93060 0.99344 0.99406 0.93574 0.91095 0.93851 0.79138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 11.47 127.77 1.47 2.16 16 2 N -0.38 -6.23 4.01 -369.56 -1.48 -7.71 16 3 C 0.06 0.86 10.89 83.54 0.91 1.77 16 4 C -0.24 -4.15 5.01 -20.14 -0.10 -4.25 16 5 C -0.02 -0.39 5.10 29.84 0.15 -0.23 16 6 C -0.07 -1.47 3.08 -9.59 -0.03 -1.50 16 7 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 8 C -0.11 -1.98 5.77 31.47 0.18 -1.80 16 9 C 0.03 0.71 6.70 86.45 0.58 1.29 16 10 N -0.53 -16.13 5.35 -883.03 -4.73 -20.85 16 11 C 0.06 2.18 4.84 86.30 0.42 2.60 16 12 C -0.08 -3.62 4.83 30.59 0.15 -3.47 16 13 C 0.01 0.51 4.28 29.85 0.13 0.64 16 14 C -0.62 -36.63 9.11 25.60 0.23 -36.40 16 15 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 16 C -0.04 -2.50 5.46 84.66 0.46 -2.04 16 17 N -0.94 -59.66 13.65 21.45 0.29 -59.36 16 18 Si 1.12 51.44 29.90 68.60 2.05 53.49 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 C 0.04 0.99 4.81 86.65 0.42 1.41 16 23 C 0.04 0.79 11.96 85.24 1.02 1.81 16 24 N -0.34 -7.47 12.58 -57.02 -0.72 -8.19 16 25 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.20 1.52 8.06 -2.91 -0.02 1.50 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 31 H 0.08 1.19 7.64 -2.39 -0.02 1.17 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.01 7.67 -2.39 -0.02 0.99 16 34 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.03 1.03 7.97 -2.39 -0.02 1.01 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 2.17 7.18 -2.39 -0.02 2.16 16 39 H -0.01 -0.67 8.01 -2.39 -0.02 -0.69 16 40 H -0.01 -0.71 8.01 -2.39 -0.02 -0.73 16 41 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 42 H 0.07 2.03 7.77 -2.39 -0.02 2.01 16 43 H 0.04 1.16 7.92 -2.39 -0.02 1.14 16 44 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -73.90 354.73 2.44 -71.46 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.04 Total: 9.19 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 5.98 Total: -38.02 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -6.63 Total: -96.12 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 2.05 Total: 53.49 kcal Total: -73.90 2.44 -71.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362881334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.076 kcal (2) G-P(sol) polarization free energy of solvation -73.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds