Wall clock time and date at job start Mon Mar 30 2020 02:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40086 * 126.03748 * 2 1 4 4 C 1.30844 * 108.20537 * 180.02562 * 3 2 1 5 5 C 1.39868 * 108.20218 * 0.02562 * 4 3 2 6 6 C 1.34949 * 126.04009 * 179.69941 * 2 1 3 7 7 C 1.50703 * 126.12243 * 359.97438 * 6 2 1 8 8 H 1.08995 * 109.50383 * 24.99670 * 7 6 2 9 9 C 1.53121 * 109.50176 * 264.92078 * 7 6 2 10 10 C 1.53123 * 109.15949 * 182.44419 * 9 7 6 11 11 C 1.53035 * 109.31034 * 57.59700 * 10 9 7 12 12 N 1.46852 * 109.52461 * 300.84064 * 11 10 9 13 13 C 1.46897 * 111.00390 * 185.83771 * 12 11 10 14 14 C 1.52999 * 109.47079 * 45.78964 * 13 12 11 15 15 C 1.52994 * 109.47266 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47121 * 180.02562 * 15 14 13 17 17 H 1.07990 * 120.00079 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99718 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00346 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99540 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47077 * 60.00441 * 20 18 16 22 22 H 1.48508 * 109.46744 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47544 * 300.00097 * 20 18 16 24 24 C 1.46851 * 111.19287 * 61.73972 * 12 11 10 25 25 H 1.09002 * 109.47391 * 90.01945 * 1 2 3 26 26 H 1.09001 * 109.46813 * 330.02001 * 1 2 3 27 27 H 1.09004 * 109.47041 * 210.02128 * 1 2 3 28 28 H 1.07998 * 125.89908 * 180.02562 * 4 3 2 29 29 H 1.07994 * 126.04191 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.52761 * 302.30939 * 9 7 6 31 31 H 1.09003 * 109.52220 * 62.50342 * 9 7 6 32 32 H 1.09001 * 109.46869 * 297.65988 * 10 9 7 33 33 H 1.09002 * 109.53654 * 177.57488 * 10 9 7 34 34 H 1.08996 * 109.46804 * 180.82556 * 11 10 9 35 35 H 1.08998 * 109.45590 * 60.84868 * 11 10 9 36 36 H 1.08998 * 109.47351 * 165.79433 * 13 12 11 37 37 H 1.09006 * 109.47263 * 285.79075 * 13 12 11 38 38 H 1.09007 * 109.47272 * 300.00399 * 14 13 12 39 39 H 1.09006 * 109.46982 * 59.99939 * 14 13 12 40 40 H 1.08998 * 109.47198 * 300.00490 * 15 14 13 41 41 H 1.09006 * 109.47229 * 60.00017 * 15 14 13 42 42 H 0.96998 * 120.00458 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.45755 * 178.24291 * 24 12 11 44 44 H 1.08999 * 109.46688 * 58.27938 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 3.5437 -0.6666 -0.0015 6 6 2.2590 -1.0912 0.0057 7 6 1.7973 -2.5258 0.0138 8 1 0.7993 -2.5893 -0.4196 9 6 1.7629 -3.0436 1.4544 10 6 1.3520 -4.5186 1.4485 11 6 2.3341 -5.3141 0.5855 12 7 2.3288 -4.7805 -0.7826 13 6 3.1555 -5.6062 -1.6729 14 6 2.8399 -7.0845 -1.4365 15 6 3.7014 -7.9445 -2.3633 16 6 3.3900 -9.4006 -2.1309 17 1 2.6513 -9.6841 -1.3960 18 6 4.0477 -10.3706 -2.8573 19 7 4.9469 -10.0253 -3.7526 20 14 3.6612 -12.1754 -2.5697 21 1 2.2253 -12.4256 -2.8544 22 1 4.4975 -13.0101 -3.4693 23 1 3.9539 -12.5253 -1.1565 24 6 2.7665 -3.3790 -0.8075 25 1 -0.3634 -0.0003 -1.0277 26 1 -0.3633 0.8902 0.5135 27 1 -0.3633 -0.8898 0.5142 28 1 4.4054 1.3710 -0.0003 29 1 4.4211 -1.2963 -0.0025 30 1 2.7520 -2.9434 1.9013 31 1 1.0410 -2.4661 2.0319 32 1 0.3468 -4.6141 1.0379 33 1 1.3672 -4.9053 2.4675 34 1 2.0355 -6.3622 0.5677 35 1 3.3367 -5.2292 1.0045 36 1 2.9400 -5.3500 -2.7102 37 1 4.2095 -5.4219 -1.4647 38 1 3.0555 -7.3407 -0.3992 39 1 1.7859 -7.2688 -1.6448 40 1 3.4863 -7.6884 -3.4007 41 1 4.7553 -7.7601 -2.1547 42 1 5.4098 -10.7077 -4.2634 43 1 2.7819 -3.0217 -1.8372 44 1 3.7672 -3.3033 -0.3821 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363198492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:34 Heat of formation + Delta-G solvation = 42.345645 kcal Electronic energy + Delta-G solvation = -21424.794474 eV Core-core repulsion = 18377.138223 eV Total energy + Delta-G solvation = -3047.656251 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.31387 -40.03676 -36.54850 -34.98844 -34.09413 -32.92789 -32.54300 -29.56706 -28.36977 -27.58134 -25.77160 -24.59473 -23.53158 -22.29801 -21.72158 -20.72496 -20.06728 -18.51219 -17.82061 -16.83291 -16.41447 -16.39182 -16.22634 -15.70897 -15.49502 -14.91856 -14.80071 -14.64107 -14.38552 -14.23787 -13.87623 -13.61341 -13.48377 -13.28521 -13.20312 -13.06606 -12.66264 -12.47443 -12.34933 -12.14355 -11.81293 -11.72042 -11.54836 -11.50099 -11.37491 -11.22244 -10.98145 -10.53214 -10.18548 -9.46852 -9.24801 -8.18997 -6.30152 0.88877 1.40851 1.43979 1.51842 1.63175 1.88500 2.41774 2.89735 3.14197 3.56285 3.69928 3.80219 3.87697 4.13679 4.15072 4.24326 4.31586 4.36382 4.41199 4.45944 4.58711 4.65323 4.68475 4.72325 4.73528 4.75280 4.87268 4.91484 4.94943 5.02921 5.08780 5.12142 5.16824 5.26146 5.32985 5.45947 5.52672 5.73637 5.75394 5.86490 6.06764 6.10759 6.21895 6.28179 6.74848 6.86946 7.39136 8.92828 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036949 B = 0.002942 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.614191 B = 9516.490660 C = 9891.429755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.378 5.378 3 N -0.334 5.334 4 C 0.042 3.958 5 C -0.287 4.287 6 C 0.095 3.905 7 C -0.011 4.011 8 H 0.096 0.904 9 C -0.102 4.102 10 C -0.107 4.107 11 C 0.042 3.958 12 N -0.539 5.539 13 C 0.068 3.932 14 C -0.094 4.094 15 C 0.026 3.974 16 C -0.543 4.543 17 H 0.061 0.939 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.266 1.266 24 C 0.071 3.929 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.205 0.795 29 H 0.150 0.850 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.027 0.973 36 H 0.066 0.934 37 H 0.024 0.976 38 H 0.057 0.943 39 H 0.055 0.945 40 H -0.010 1.010 41 H -0.011 1.011 42 H 0.263 0.737 43 H 0.070 0.930 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.510 19.233 11.467 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.160 5.160 3 N -0.156 5.156 4 C -0.143 4.143 5 C -0.317 4.317 6 C -0.034 4.034 7 C -0.031 4.031 8 H 0.114 0.886 9 C -0.140 4.140 10 C -0.145 4.145 11 C -0.086 4.086 12 N -0.263 5.263 13 C -0.060 4.060 14 C -0.132 4.132 15 C -0.012 4.012 16 C -0.581 4.581 17 H 0.079 0.921 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.789 3.211 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.191 1.191 24 C -0.058 4.058 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.124 0.876 28 H 0.222 0.778 29 H 0.168 0.832 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.009 0.991 41 H 0.007 0.993 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.835 20.192 11.168 25.083 hybrid contribution 1.733 -1.561 -0.169 2.338 sum -8.103 18.630 10.999 23.102 Atomic orbital electron populations 1.22154 0.72760 1.05760 1.04466 1.48770 1.07600 1.02895 1.56732 1.77294 1.02710 1.09040 1.26550 1.24269 0.95590 0.95504 0.98927 1.21471 0.96895 0.95285 1.18014 1.21145 0.91463 0.90365 1.00379 1.19720 1.00204 0.85626 0.97589 0.88617 1.21570 1.02340 0.96179 0.93948 1.21564 0.99306 0.93854 0.99779 1.22316 0.98448 1.00019 0.87824 1.61972 1.53405 1.01772 1.09195 1.22011 0.94103 0.93010 0.96880 1.21535 0.99649 0.92643 0.99369 1.18968 0.94035 0.94091 0.94108 1.21672 1.22288 0.92864 1.21253 0.92086 1.25995 0.94835 1.04304 0.94780 1.70089 1.26965 1.35182 1.25255 0.85509 0.78509 0.78696 0.78392 1.19107 1.20920 1.19082 1.21986 0.96182 0.87618 1.00000 0.89906 0.88533 0.87563 0.77790 0.83182 0.91992 0.90363 0.90628 0.89633 0.90504 0.95446 0.91517 0.95798 0.92452 0.92655 0.99113 0.99280 0.92786 0.91172 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 11.07 127.77 1.41 2.52 16 2 N -0.38 -7.78 4.01 -356.02 -1.43 -9.21 16 3 N -0.33 -8.01 12.58 -57.02 -0.72 -8.73 16 4 C 0.04 0.87 12.03 85.23 1.02 1.90 16 5 C -0.29 -6.12 9.97 21.99 0.22 -5.90 16 6 C 0.10 1.97 5.86 41.41 0.24 2.22 16 7 C -0.01 -0.20 2.36 -11.49 -0.03 -0.23 16 8 H 0.10 1.70 7.49 -2.39 -0.02 1.69 16 9 C -0.10 -1.70 5.27 30.68 0.16 -1.54 16 10 C -0.11 -1.94 6.09 30.65 0.19 -1.75 16 11 C 0.04 1.04 4.85 86.32 0.42 1.46 16 12 N -0.54 -14.98 4.81 -896.36 -4.31 -19.29 16 13 C 0.07 2.33 5.27 86.30 0.46 2.78 16 14 C -0.09 -3.85 4.40 30.59 0.13 -3.72 16 15 C 0.03 1.36 4.97 29.85 0.15 1.51 16 16 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 17 H 0.06 3.32 7.74 -2.92 -0.02 3.30 16 18 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 19 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 20 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 C 0.07 1.67 4.31 86.32 0.37 2.04 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.11 0.89 7.53 -2.38 -0.02 0.87 16 28 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.15 2.93 7.34 -2.91 -0.02 2.91 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 2.14 5.81 -2.39 -0.01 2.13 16 35 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.02 0.84 8.08 -2.38 -0.02 0.82 16 38 H 0.06 2.26 6.21 -2.38 -0.01 2.24 16 39 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 40 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 41 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 42 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.07 1.73 8.12 -2.39 -0.02 1.71 16 44 H 0.04 0.90 7.23 -2.39 -0.02 0.89 16 Total: -1.00 -68.89 348.05 2.25 -66.64 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.95 Total: 10.53 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 5.45 Total: -29.14 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -6.17 Total: -94.30 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -68.89 2.25 -66.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363198492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.981 kcal (2) G-P(sol) polarization free energy of solvation -68.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds