Wall clock time and date at job start Mon Mar 30 2020 02:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40083 * 126.04077 * 2 1 4 4 C 1.30843 * 108.20467 * 179.97438 * 3 2 1 5 5 C 1.39873 * 108.20136 * 359.77953 * 4 3 2 6 6 C 1.34950 * 126.03153 * 179.97438 * 2 1 3 7 7 C 1.50697 * 126.12868 * 359.97438 * 6 2 1 8 8 H 1.08999 * 109.47183 * 25.00343 * 7 6 2 9 9 C 1.52999 * 109.47156 * 265.00204 * 7 6 2 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47366 * 59.99995 * 10 9 7 12 12 C 1.52999 * 109.47035 * 300.00020 * 11 10 9 13 13 H 1.08995 * 109.47524 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.47083 * 300.00178 * 12 11 10 15 15 C 1.46906 * 110.99573 * 274.99770 * 14 12 11 16 16 C 1.52998 * 109.47020 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.47332 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99871 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00534 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99727 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00639 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46912 * 59.99621 * 21 19 17 23 23 H 1.48492 * 109.47375 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46668 * 300.00370 * 21 19 17 25 25 C 1.53000 * 109.47060 * 59.99792 * 12 11 10 26 26 H 1.09002 * 109.47173 * 270.02976 * 1 2 3 27 27 H 1.09005 * 109.46695 * 30.02743 * 1 2 3 28 28 H 1.09002 * 109.47552 * 150.01944 * 1 2 3 29 29 H 1.07996 * 125.89641 * 180.02562 * 4 3 2 30 30 H 1.07999 * 126.03992 * 180.23507 * 5 4 3 31 31 H 1.08995 * 109.47524 * 60.00132 * 9 7 6 32 32 H 1.09000 * 109.46801 * 299.99470 * 9 7 6 33 33 H 1.08999 * 109.47227 * 300.00107 * 10 9 7 34 34 H 1.09004 * 109.47340 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47466 * 179.97438 * 11 10 9 36 36 H 1.09004 * 109.47186 * 59.99569 * 11 10 9 37 37 H 1.00896 * 111.00219 * 38.95409 * 14 12 11 38 38 H 1.09002 * 109.46991 * 299.99841 * 15 14 12 39 39 H 1.09000 * 109.47202 * 60.00133 * 15 14 12 40 40 H 1.08995 * 109.47213 * 300.00679 * 16 15 14 41 41 H 1.09008 * 109.47264 * 60.00068 * 16 15 14 42 42 H 0.97001 * 120.00114 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.47319 * 60.00354 * 25 12 11 44 44 H 1.09004 * 109.47340 * 180.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7319 0.0006 5 6 3.5436 -0.6667 0.0060 6 6 2.2588 -1.0913 0.0005 7 6 1.7971 -2.5258 0.0017 8 1 0.7991 -2.5867 -0.4323 9 6 1.7610 -3.0488 1.4391 10 6 1.2929 -4.5054 1.4402 11 6 2.2617 -5.3532 0.6132 12 6 2.2978 -4.8302 -0.8242 13 1 2.9882 -5.4338 -1.4132 14 7 0.9528 -4.9127 -1.4092 15 6 0.7029 -6.2481 -1.9681 16 6 -0.7045 -6.2954 -2.5662 17 6 -0.9607 -7.6650 -3.1402 18 1 -0.1962 -8.4258 -3.0837 19 6 -2.1713 -7.9472 -3.7366 20 7 -3.1024 -7.0209 -3.8051 21 14 -2.4891 -9.6452 -4.4475 22 1 -2.3737 -10.6619 -3.3713 23 1 -3.8550 -9.6910 -5.0281 24 1 -1.4908 -9.9322 -5.5086 25 6 2.7659 -3.3736 -0.8253 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3634 -0.8902 -0.5135 29 1 4.4055 1.3708 0.0011 30 1 4.4210 -1.2966 0.0114 31 1 1.0712 -2.4447 2.0283 32 1 2.7591 -2.9880 1.8729 33 1 0.2950 -4.5667 1.0061 34 1 1.2676 -4.8782 2.4642 35 1 1.9285 -6.3910 0.6144 36 1 3.2597 -5.2919 1.0473 37 1 0.2477 -4.6669 -0.7306 38 1 1.4362 -6.4592 -2.7465 39 1 0.7868 -6.9942 -1.1780 40 1 -1.4375 -6.0843 -1.7876 41 1 -0.7888 -5.5491 -3.3564 42 1 -3.9540 -7.2193 -4.2250 43 1 3.7639 -3.3123 -0.3912 44 1 2.7912 -3.0008 -1.8493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363934546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:23 Heat of formation + Delta-G solvation = 33.108774 kcal Electronic energy + Delta-G solvation = -21779.621714 eV Core-core repulsion = 18731.564923 eV Total energy + Delta-G solvation = -3048.056792 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.27133 -40.10153 -36.44810 -34.82150 -34.09051 -32.89918 -31.84855 -29.56510 -29.11418 -27.56482 -25.92006 -24.09944 -23.35365 -22.49105 -21.93897 -20.69440 -19.58755 -18.40583 -17.93116 -16.79128 -16.46570 -16.30060 -16.10065 -15.61124 -15.46369 -14.89531 -14.79788 -14.54976 -14.26527 -14.02482 -13.75771 -13.42080 -13.24065 -13.19954 -13.15101 -12.92619 -12.86960 -12.78207 -12.39931 -12.13691 -11.89212 -11.69445 -11.54555 -11.33453 -11.27858 -11.14314 -10.96475 -10.54978 -10.14661 -9.38980 -9.15022 -8.19689 -6.30841 0.97663 1.40504 1.43447 1.51316 1.68171 1.96762 2.40916 3.13808 3.43188 3.51298 3.72751 3.80256 3.90836 4.17892 4.21607 4.29393 4.37418 4.38750 4.50122 4.52909 4.57093 4.65200 4.65782 4.72225 4.77120 4.84552 4.88570 5.03059 5.06563 5.10972 5.12574 5.20159 5.30437 5.34310 5.43328 5.48087 5.54248 5.71324 5.81528 5.81765 6.14470 6.18591 6.36017 6.63930 6.81949 6.86884 7.38429 8.92083 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025488 B = 0.003496 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.292247 B = 8007.920051 C = 8511.177906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.383 5.383 3 N -0.342 5.342 4 C 0.040 3.960 5 C -0.283 4.283 6 C 0.094 3.906 7 C -0.019 4.019 8 H 0.075 0.925 9 C -0.096 4.096 10 C -0.117 4.117 11 C -0.145 4.145 12 C 0.084 3.916 13 H 0.074 0.926 14 N -0.691 5.691 15 C 0.085 3.915 16 C 0.033 3.967 17 C -0.545 4.545 18 H 0.060 0.940 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.283 1.283 24 H -0.268 1.268 25 C -0.082 4.082 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.208 0.792 30 H 0.163 0.837 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.337 0.663 38 H 0.054 0.946 39 H 0.019 0.981 40 H -0.010 1.010 41 H -0.008 1.008 42 H 0.263 0.737 43 H 0.089 0.911 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.073 10.523 12.238 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.165 5.165 3 N -0.163 5.163 4 C -0.145 4.145 5 C -0.312 4.312 6 C -0.034 4.034 7 C -0.039 4.039 8 H 0.093 0.907 9 C -0.134 4.134 10 C -0.155 4.155 11 C -0.184 4.184 12 C -0.026 4.026 13 H 0.093 0.907 14 N -0.324 5.324 15 C -0.044 4.044 16 C -0.004 4.004 17 C -0.583 4.583 18 H 0.078 0.922 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.209 1.209 24 H -0.192 1.192 25 C -0.120 4.120 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.224 0.776 30 H 0.181 0.819 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.157 0.843 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.008 0.992 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.135 11.868 11.567 20.540 hybrid contribution -0.339 -1.826 0.108 1.861 sum 11.795 10.042 11.675 19.398 Atomic orbital electron populations 1.22060 0.73491 1.05154 1.04347 1.48744 1.07346 1.03373 1.57043 1.77284 1.02938 1.09193 1.26922 1.24332 0.95415 0.95846 0.98869 1.21493 0.96750 0.95022 1.17911 1.21405 0.91663 0.90448 0.99898 1.19774 1.00265 0.86274 0.97569 0.90675 1.21463 1.02543 0.95320 0.94034 1.21507 0.98522 0.94870 1.00612 1.22146 1.01283 0.98870 0.96067 1.21631 0.90572 0.96661 0.93731 0.90733 1.60696 1.04168 1.28017 1.39492 1.21760 0.97446 0.88356 0.96797 1.18903 0.91916 0.95186 0.94444 1.21604 1.00158 0.98730 1.37837 0.92202 1.25955 0.95961 1.01339 0.96421 1.70098 1.06234 1.35520 1.45286 0.85509 0.77284 0.79399 0.78908 1.19086 1.20889 1.19243 1.21453 0.98441 0.92704 0.99437 0.89420 0.88983 0.88783 0.77565 0.81899 0.91985 0.90312 0.93122 0.90309 0.93113 0.89463 0.84261 0.92717 0.96266 0.99158 0.98995 0.92796 0.89254 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.71 11.27 127.77 1.44 3.15 16 2 N -0.38 -9.42 4.01 -356.02 -1.43 -10.85 16 3 N -0.34 -9.08 12.58 -57.02 -0.72 -9.80 16 4 C 0.04 0.87 12.03 85.24 1.03 1.89 16 5 C -0.28 -5.93 9.98 21.99 0.22 -5.71 16 6 C 0.09 2.15 5.85 41.40 0.24 2.39 16 7 C -0.02 -0.39 2.14 -11.54 -0.02 -0.41 16 8 H 0.08 1.83 6.02 -2.39 -0.01 1.81 16 9 C -0.10 -1.71 5.19 30.59 0.16 -1.55 16 10 C -0.12 -2.29 5.67 30.60 0.17 -2.11 16 11 C -0.14 -3.04 5.52 30.60 0.17 -2.87 16 12 C 0.08 2.10 2.85 44.91 0.13 2.23 16 13 H 0.07 1.93 7.80 -2.39 -0.02 1.91 16 14 N -0.69 -22.89 5.77 -491.56 -2.83 -25.72 16 15 C 0.09 3.49 5.42 86.30 0.47 3.96 16 16 C 0.03 1.74 5.23 29.85 0.16 1.90 16 17 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 18 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 19 C 0.00 0.07 5.46 84.65 0.46 0.53 16 20 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 21 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 C -0.08 -1.76 4.51 30.60 0.14 -1.63 16 26 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.09 1.71 6.98 -2.39 -0.02 1.69 16 29 H 0.21 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.16 2.66 7.37 -2.91 -0.02 2.64 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.16 6.26 -2.39 -0.01 1.15 16 34 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.05 1.22 7.46 -2.39 -0.02 1.21 16 36 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.34 10.93 5.56 -89.70 -0.50 10.43 16 38 H 0.05 2.25 8.06 -2.39 -0.02 2.24 16 39 H 0.02 0.77 7.44 -2.39 -0.02 0.75 16 40 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 41 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 42 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 43 H 0.09 1.52 7.28 -2.38 -0.02 1.50 16 44 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -68.33 344.32 2.79 -65.54 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.47 Total: 20.13 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 4.99 Total: -28.98 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -4.70 Total: -102.78 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.33 2.79 -65.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363934546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.652 kcal (2) G-P(sol) polarization free energy of solvation -68.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds