Wall clock time and date at job start Mon Mar 30 2020 02:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40085 * 126.03816 * 2 1 4 4 C 1.30841 * 108.20773 * 179.85105 * 3 2 1 5 5 C 1.39866 * 108.19911 * 0.40256 * 4 3 2 6 6 C 1.34944 * 126.03675 * 180.29997 * 2 1 3 7 7 C 1.50704 * 126.12903 * 359.96580 * 6 2 1 8 8 H 1.09000 * 109.46752 * 334.99255 * 7 6 2 9 9 C 1.52992 * 109.47150 * 94.99606 * 7 6 2 10 10 C 1.53006 * 109.47173 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46827 * 299.99882 * 10 9 7 12 12 C 1.53005 * 109.47049 * 59.99950 * 11 10 9 13 13 H 1.09001 * 109.46893 * 180.02562 * 12 11 10 14 14 N 1.46888 * 109.47185 * 60.00025 * 12 11 10 15 15 C 1.46905 * 111.00164 * 84.99967 * 14 12 11 16 16 C 1.53002 * 109.47102 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47031 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00160 * 359.97438 * 17 16 15 19 19 C 1.37883 * 120.00111 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99738 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47236 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46867 * 120.00078 * 21 19 17 24 24 H 1.48505 * 109.46784 * 239.99672 * 21 19 17 25 25 C 1.52997 * 109.46933 * 299.99718 * 12 11 10 26 26 H 1.09002 * 109.47391 * 269.69466 * 1 2 3 27 27 H 1.09001 * 109.46813 * 149.69523 * 1 2 3 28 28 H 1.09004 * 109.47041 * 29.69650 * 1 2 3 29 29 H 1.08002 * 125.90099 * 180.14088 * 4 3 2 30 30 H 1.07998 * 126.04130 * 179.74193 * 5 4 3 31 31 H 1.09001 * 109.46991 * 299.99898 * 9 7 6 32 32 H 1.09000 * 109.47579 * 60.00156 * 9 7 6 33 33 H 1.08993 * 109.47196 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.47011 * 59.99477 * 10 9 7 35 35 H 1.09004 * 109.46859 * 300.00091 * 11 10 9 36 36 H 1.09002 * 109.47319 * 179.97438 * 11 10 9 37 37 H 1.00907 * 111.00274 * 208.95178 * 14 12 11 38 38 H 1.08998 * 109.46911 * 299.99836 * 15 14 12 39 39 H 1.09001 * 109.46975 * 60.00102 * 15 14 12 40 40 H 1.09005 * 109.46604 * 299.99815 * 16 15 14 41 41 H 1.08994 * 109.47558 * 59.99486 * 16 15 14 42 42 H 0.97004 * 119.99899 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.47694 * 300.00298 * 25 12 11 44 44 H 1.09007 * 109.47026 * 180.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 0.0032 5 6 3.5437 -0.6665 -0.0039 6 6 2.2589 -1.0912 -0.0057 7 6 1.7973 -2.5258 -0.0125 8 1 0.7997 -2.5885 0.4221 9 6 1.7600 -3.0427 -1.4520 10 6 1.2908 -4.4990 -1.4589 11 6 2.2595 -5.3508 -0.6361 12 6 2.2968 -4.8338 0.8035 13 1 2.9873 -5.4404 1.3896 14 7 0.9523 -4.9179 1.3890 15 6 0.7017 -6.2553 1.9425 16 6 -0.7054 -6.3041 2.5413 17 6 -0.9622 -7.6759 3.1098 18 1 -0.1983 -8.4371 3.0496 19 6 -2.1723 -7.9594 3.7067 20 7 -3.1023 -7.0324 3.7805 21 14 -2.4908 -9.6601 4.4107 22 1 -1.2944 -10.5145 4.2014 23 1 -2.7723 -9.5493 5.8645 24 1 -3.6592 -10.2687 3.7252 25 6 2.7660 -3.3776 0.8103 26 1 -0.3634 -0.0055 1.0276 27 1 -0.3633 -0.8873 -0.5186 28 1 -0.3633 0.8927 -0.5091 29 1 4.4055 1.3710 0.0062 30 1 4.4211 -1.2963 -0.0074 31 1 1.0696 -2.4361 -2.0380 32 1 2.7577 -2.9800 -1.8866 33 1 1.2638 -4.8672 -2.4844 34 1 0.2931 -4.5614 -1.0244 35 1 3.2573 -5.2884 -1.0705 36 1 1.9251 -6.3883 -0.6406 37 1 0.8181 -4.2052 2.0906 38 1 0.7845 -6.9982 1.1492 39 1 1.4353 -6.4702 2.7196 40 1 -0.7886 -5.5611 3.3346 41 1 -1.4387 -6.0893 1.7641 42 1 -3.9535 -7.2318 4.2008 43 1 3.7638 -3.3152 0.3759 44 1 2.7930 -3.0094 1.8360 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363934810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:31 Heat of formation + Delta-G solvation = 50.549602 kcal Electronic energy + Delta-G solvation = -21764.610761 eV Core-core repulsion = 18717.310260 eV Total energy + Delta-G solvation = -3047.300501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38776 -38.84029 -34.99391 -33.35278 -32.83079 -31.91011 -30.39512 -28.43009 -27.70313 -26.76665 -24.04191 -23.13095 -22.13470 -21.18520 -20.46716 -19.68830 -18.68384 -16.92987 -16.28049 -15.54743 -15.46715 -15.09691 -14.64092 -14.44350 -14.25896 -13.76927 -13.67759 -13.36515 -12.98499 -12.69185 -12.49553 -12.39177 -12.28649 -12.23857 -11.89224 -11.62149 -11.12898 -10.98599 -10.97024 -10.76418 -10.55809 -10.48592 -10.29212 -10.10300 -9.84012 -9.36983 -9.24037 -9.13887 -8.52360 -8.37348 -7.80563 -6.01939 -4.04128 1.85326 2.48899 2.81106 3.29555 3.37163 3.41051 4.39876 4.42196 4.50798 4.63826 4.82431 4.91217 5.07766 5.09605 5.17623 5.30465 5.34434 5.37245 5.40685 5.45438 5.56729 5.60031 5.68700 5.72463 5.81093 5.94265 5.99378 6.03977 6.22007 6.30966 6.34293 6.35663 6.39880 6.48037 6.62204 6.68248 6.98071 6.99099 7.48923 7.68757 7.71867 7.81393 7.95181 8.06761 8.42366 9.03477 9.59884 11.09476 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025469 B = 0.003496 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.091478 B = 8007.174799 C = 8510.286284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.371 5.371 3 N -0.307 5.307 4 C 0.043 3.957 5 C -0.279 4.279 6 C 0.101 3.899 7 C -0.021 4.021 8 H 0.094 0.906 9 C -0.101 4.101 10 C -0.110 4.110 11 C -0.105 4.105 12 C 0.084 3.916 13 H 0.041 0.959 14 N -0.683 5.683 15 C 0.066 3.934 16 C 0.026 3.974 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.104 4.104 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.179 0.821 30 H 0.144 0.856 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.334 0.666 38 H 0.058 0.942 39 H 0.014 0.986 40 H 0.012 0.988 41 H 0.024 0.976 42 H 0.260 0.740 43 H 0.070 0.930 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.901 11.786 -10.014 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.153 5.153 3 N -0.128 5.128 4 C -0.143 4.143 5 C -0.308 4.308 6 C -0.027 4.027 7 C -0.041 4.041 8 H 0.112 0.888 9 C -0.139 4.139 10 C -0.148 4.148 11 C -0.143 4.143 12 C -0.026 4.026 13 H 0.059 0.941 14 N -0.315 5.315 15 C -0.062 4.062 16 C -0.011 4.011 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.142 4.142 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.196 0.804 30 H 0.162 0.838 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.152 0.848 38 H 0.076 0.924 39 H 0.032 0.968 40 H 0.030 0.970 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.471 12.710 -10.551 19.558 hybrid contribution 0.833 -1.524 1.321 2.182 sum 11.304 11.186 -9.231 18.388 Atomic orbital electron populations 1.21895 0.74366 1.04471 1.03736 1.48507 1.06545 1.03399 1.56865 1.77327 1.01865 1.08197 1.25431 1.23778 0.95160 0.95177 1.00138 1.21186 0.96392 0.94756 1.18459 1.21310 0.91178 0.90529 0.99660 1.19799 1.00916 0.85802 0.97580 0.88773 1.21487 1.01283 0.96883 0.94214 1.21401 1.01188 0.93243 0.98949 1.21499 0.98576 0.99748 0.94525 1.21494 0.90723 0.94451 0.95912 0.94058 1.60652 1.25389 1.06817 1.38632 1.22187 0.99656 0.87993 0.96346 1.19055 0.89925 0.96597 0.95555 1.21222 0.99766 0.97568 1.37380 0.92766 1.24999 0.96222 0.96977 0.96168 1.69977 1.05752 1.33053 1.44495 0.86549 0.78209 0.84571 0.78745 1.19769 1.21047 1.20986 1.21702 0.98445 0.94393 0.99696 0.90490 0.89147 0.89470 0.80379 0.83847 0.92627 0.92087 0.92790 0.89869 0.92647 0.91815 0.84826 0.92356 0.96796 0.96971 0.95734 0.93075 0.91119 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.91 11.06 59.85 0.66 1.58 16 2 N -0.37 -4.63 4.01 -63.88 -0.26 -4.88 16 3 N -0.31 -4.16 12.58 30.62 0.39 -3.77 16 4 C 0.04 0.49 12.03 -17.36 -0.21 0.28 16 5 C -0.28 -3.18 9.98 -40.01 -0.40 -3.58 16 6 C 0.10 1.21 5.86 -82.26 -0.48 0.73 16 7 C -0.02 -0.23 2.04 -91.77 -0.19 -0.42 16 8 H 0.09 1.15 6.83 -51.93 -0.35 0.80 16 9 C -0.10 -1.07 5.19 -26.73 -0.14 -1.21 16 10 C -0.11 -1.30 5.77 -26.73 -0.15 -1.46 16 11 C -0.11 -1.30 5.53 -26.73 -0.15 -1.45 16 12 C 0.08 1.11 2.82 -67.72 -0.19 0.92 16 13 H 0.04 0.57 7.80 -51.93 -0.41 0.17 16 14 N -0.68 -11.00 4.82 -106.73 -0.51 -11.52 16 15 C 0.07 1.33 5.42 -3.82 -0.02 1.31 16 16 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 17 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 21 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.10 -1.16 4.17 -26.73 -0.11 -1.27 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 0.75 7.55 -51.93 -0.39 0.36 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.14 1.38 7.37 -52.49 -0.39 0.99 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.16 7.60 -51.93 -0.39 0.77 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.87 7.45 -51.93 -0.39 0.49 16 37 H 0.33 5.33 8.19 -39.29 -0.32 5.01 16 38 H 0.06 1.18 7.43 -51.93 -0.39 0.80 16 39 H 0.01 0.28 8.06 -51.93 -0.42 -0.14 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.07 0.71 7.28 -51.93 -0.38 0.33 16 44 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -31.25 348.15 -8.95 -40.21 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.59 Total: 1.52 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -1.94 Total: -17.39 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.35 Total: -46.06 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.25 -8.95 -40.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363934810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.756 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds