Wall clock time and date at job start Mon Mar 30 2020 02:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40085 * 126.03816 * 2 1 4 4 C 1.30841 * 108.20773 * 179.85105 * 3 2 1 5 5 C 1.39866 * 108.19911 * 0.40256 * 4 3 2 6 6 C 1.34944 * 126.03675 * 180.29997 * 2 1 3 7 7 C 1.50704 * 126.12903 * 359.96580 * 6 2 1 8 8 H 1.09000 * 109.46752 * 334.99255 * 7 6 2 9 9 C 1.52992 * 109.47150 * 94.99606 * 7 6 2 10 10 C 1.53006 * 109.47173 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46827 * 299.99882 * 10 9 7 12 12 C 1.53005 * 109.47049 * 59.99950 * 11 10 9 13 13 H 1.09001 * 109.46893 * 180.02562 * 12 11 10 14 14 N 1.46888 * 109.47185 * 60.00025 * 12 11 10 15 15 C 1.46905 * 111.00164 * 84.99967 * 14 12 11 16 16 C 1.53002 * 109.47102 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47031 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00160 * 359.97438 * 17 16 15 19 19 C 1.37883 * 120.00111 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99738 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47236 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46867 * 120.00078 * 21 19 17 24 24 H 1.48505 * 109.46784 * 239.99672 * 21 19 17 25 25 C 1.52997 * 109.46933 * 299.99718 * 12 11 10 26 26 H 1.09002 * 109.47391 * 269.69466 * 1 2 3 27 27 H 1.09001 * 109.46813 * 149.69523 * 1 2 3 28 28 H 1.09004 * 109.47041 * 29.69650 * 1 2 3 29 29 H 1.08002 * 125.90099 * 180.14088 * 4 3 2 30 30 H 1.07998 * 126.04130 * 179.74193 * 5 4 3 31 31 H 1.09001 * 109.46991 * 299.99898 * 9 7 6 32 32 H 1.09000 * 109.47579 * 60.00156 * 9 7 6 33 33 H 1.08993 * 109.47196 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.47011 * 59.99477 * 10 9 7 35 35 H 1.09004 * 109.46859 * 300.00091 * 11 10 9 36 36 H 1.09002 * 109.47319 * 179.97438 * 11 10 9 37 37 H 1.00907 * 111.00274 * 208.95178 * 14 12 11 38 38 H 1.08998 * 109.46911 * 299.99836 * 15 14 12 39 39 H 1.09001 * 109.46975 * 60.00102 * 15 14 12 40 40 H 1.09005 * 109.46604 * 299.99815 * 16 15 14 41 41 H 1.08994 * 109.47558 * 59.99486 * 16 15 14 42 42 H 0.97004 * 119.99899 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.47694 * 300.00298 * 25 12 11 44 44 H 1.09007 * 109.47026 * 180.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 0.0032 5 6 3.5437 -0.6665 -0.0039 6 6 2.2589 -1.0912 -0.0057 7 6 1.7973 -2.5258 -0.0125 8 1 0.7997 -2.5885 0.4221 9 6 1.7600 -3.0427 -1.4520 10 6 1.2908 -4.4990 -1.4589 11 6 2.2595 -5.3508 -0.6361 12 6 2.2968 -4.8338 0.8035 13 1 2.9873 -5.4404 1.3896 14 7 0.9523 -4.9179 1.3890 15 6 0.7017 -6.2553 1.9425 16 6 -0.7054 -6.3041 2.5413 17 6 -0.9622 -7.6759 3.1098 18 1 -0.1983 -8.4371 3.0496 19 6 -2.1723 -7.9594 3.7067 20 7 -3.1023 -7.0324 3.7805 21 14 -2.4908 -9.6601 4.4107 22 1 -1.2944 -10.5145 4.2014 23 1 -2.7723 -9.5493 5.8645 24 1 -3.6592 -10.2687 3.7252 25 6 2.7660 -3.3776 0.8103 26 1 -0.3634 -0.0055 1.0276 27 1 -0.3633 -0.8873 -0.5186 28 1 -0.3633 0.8927 -0.5091 29 1 4.4055 1.3710 0.0062 30 1 4.4211 -1.2963 -0.0074 31 1 1.0696 -2.4361 -2.0380 32 1 2.7577 -2.9800 -1.8866 33 1 1.2638 -4.8672 -2.4844 34 1 0.2931 -4.5614 -1.0244 35 1 3.2573 -5.2884 -1.0705 36 1 1.9251 -6.3883 -0.6406 37 1 0.8181 -4.2052 2.0906 38 1 0.7845 -6.9982 1.1492 39 1 1.4353 -6.4702 2.7196 40 1 -0.7886 -5.5611 3.3346 41 1 -1.4387 -6.0893 1.7641 42 1 -3.9535 -7.2318 4.2008 43 1 3.7638 -3.3152 0.3759 44 1 2.7930 -3.0094 1.8360 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363934810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:31 Heat of formation + Delta-G solvation = 32.192400 kcal Electronic energy + Delta-G solvation = -21765.406789 eV Core-core repulsion = 18717.310260 eV Total energy + Delta-G solvation = -3048.096529 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.26424 -39.88922 -36.49634 -34.82092 -34.10034 -32.91331 -31.89004 -29.45559 -29.15509 -27.56628 -25.92444 -24.10314 -23.12633 -22.45395 -21.89551 -20.61275 -19.71359 -18.41699 -17.82729 -16.72456 -16.52475 -16.34434 -16.10012 -15.53256 -15.52886 -14.80881 -14.72132 -14.56265 -14.28663 -14.05867 -13.61117 -13.42139 -13.23980 -13.20205 -13.07938 -12.93857 -12.89892 -12.75134 -12.34196 -12.06181 -11.88562 -11.66068 -11.46289 -11.36386 -11.20137 -11.10514 -10.94047 -10.55660 -10.14261 -9.40041 -9.16368 -8.19977 -6.30640 0.96880 1.40143 1.40591 1.53639 1.67885 1.96168 2.40687 3.13802 3.38303 3.51573 3.73672 3.89198 3.91610 4.16559 4.34233 4.37117 4.39892 4.43515 4.49872 4.58300 4.61746 4.66798 4.68307 4.72419 4.80941 4.85457 4.90628 5.05715 5.08396 5.11121 5.14728 5.28699 5.39118 5.40560 5.47658 5.48781 5.69058 5.71936 5.81043 5.83208 6.14109 6.18811 6.36053 6.61676 6.81667 6.87490 7.38618 8.92103 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025469 B = 0.003496 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.091478 B = 8007.174799 C = 8510.286284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.382 5.382 3 N -0.341 5.341 4 C 0.040 3.960 5 C -0.283 4.283 6 C 0.092 3.908 7 C -0.013 4.013 8 H 0.078 0.922 9 C -0.093 4.093 10 C -0.106 4.106 11 C -0.104 4.104 12 C 0.084 3.916 13 H 0.041 0.959 14 N -0.682 5.682 15 C 0.087 3.913 16 C 0.034 3.966 17 C -0.543 4.543 18 H 0.058 0.942 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.964 3.036 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.278 1.278 25 C -0.095 4.095 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.207 0.793 30 H 0.163 0.837 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.334 0.666 38 H 0.056 0.944 39 H 0.013 0.987 40 H -0.011 1.011 41 H -0.005 1.005 42 H 0.263 0.737 43 H 0.093 0.907 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.637 11.303 -10.555 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.165 5.165 3 N -0.163 5.163 4 C -0.145 4.145 5 C -0.312 4.312 6 C -0.036 4.036 7 C -0.033 4.033 8 H 0.097 0.903 9 C -0.131 4.131 10 C -0.144 4.144 11 C -0.142 4.142 12 C -0.025 4.025 13 H 0.059 0.941 14 N -0.314 5.314 15 C -0.042 4.042 16 C -0.004 4.004 17 C -0.581 4.581 18 H 0.077 0.923 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.789 3.211 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.134 4.134 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.224 0.776 30 H 0.181 0.819 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.152 0.848 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.007 0.993 41 H 0.014 0.986 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.220 12.233 -11.102 20.549 hybrid contribution 0.297 -1.324 1.470 2.000 sum 12.518 10.909 -9.632 19.196 Atomic orbital electron populations 1.22052 0.73460 1.05365 1.04115 1.48745 1.07331 1.03357 1.57035 1.77286 1.02943 1.09218 1.26860 1.24331 0.95408 0.95855 0.98879 1.21494 0.96743 0.95020 1.17922 1.21464 0.91632 0.90548 0.99933 1.19694 1.00083 0.85711 0.97855 0.90331 1.21420 1.01973 0.95818 0.93857 1.21334 0.99623 0.94161 0.99273 1.21513 1.00010 0.98679 0.94020 1.21590 0.88724 0.96082 0.96129 0.94128 1.60571 1.27969 1.04704 1.38130 1.21767 0.96281 0.90197 0.95966 1.18896 0.92439 0.95012 0.94004 1.21661 1.00159 0.98710 1.37579 0.92349 1.25942 0.95976 1.01285 0.96478 1.70106 1.06300 1.35366 1.45336 0.85417 0.78388 0.79394 0.77949 1.18606 1.20429 1.20395 1.21635 0.99371 0.92601 0.99748 0.90386 0.88322 0.88552 0.77594 0.81920 0.92497 0.90746 0.91635 0.92587 0.90086 0.93530 0.84781 0.92514 0.96851 0.99296 0.98636 0.92821 0.88880 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.70 11.06 127.77 1.41 3.12 16 2 N -0.38 -9.24 4.01 -356.02 -1.43 -10.67 16 3 N -0.34 -8.92 12.58 -57.02 -0.72 -9.64 16 4 C 0.04 0.85 12.03 85.23 1.02 1.87 16 5 C -0.28 -5.77 9.98 21.99 0.22 -5.56 16 6 C 0.09 2.06 5.86 41.41 0.24 2.31 16 7 C -0.01 -0.27 2.04 -11.54 -0.02 -0.30 16 8 H 0.08 1.90 6.83 -2.39 -0.02 1.89 16 9 C -0.09 -1.79 5.19 30.59 0.16 -1.63 16 10 C -0.11 -2.37 5.77 30.60 0.18 -2.19 16 11 C -0.10 -2.38 5.53 30.60 0.17 -2.21 16 12 C 0.08 2.10 2.82 44.92 0.13 2.23 16 13 H 0.04 1.05 7.80 -2.39 -0.02 1.03 16 14 N -0.68 -22.04 4.82 -491.58 -2.37 -24.41 16 15 C 0.09 3.52 5.42 86.30 0.47 3.99 16 16 C 0.03 1.78 5.23 29.85 0.16 1.93 16 17 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 18 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 19 C 0.00 0.06 5.46 84.66 0.46 0.53 16 20 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 21 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 C -0.10 -1.93 4.17 30.59 0.13 -1.80 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.10 1.63 7.55 -2.39 -0.02 1.61 16 28 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.21 2.84 8.06 -2.91 -0.02 2.81 16 30 H 0.16 2.57 7.37 -2.91 -0.02 2.55 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.56 7.60 -2.39 -0.02 1.55 16 35 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.05 1.23 7.45 -2.39 -0.02 1.21 16 37 H 0.33 10.82 8.19 -89.69 -0.73 10.08 16 38 H 0.06 2.31 7.43 -2.39 -0.02 2.30 16 39 H 0.01 0.54 8.06 -2.39 -0.02 0.52 16 40 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 41 H 0.00 -0.28 8.14 -2.39 -0.02 -0.29 16 42 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.09 1.52 7.28 -2.38 -0.02 1.51 16 44 H 0.06 1.28 8.12 -2.38 -0.02 1.26 16 Total: -1.00 -67.47 348.15 2.98 -64.49 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.23 Total: 18.58 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 4.95 Total: -28.27 kcal Atomic # 7 Polarization: -96.70 SS G_CDS: -4.23 Total: -100.93 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -67.47 2.98 -64.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363934810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.682 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds