Wall clock time and date at job start Mon Mar 30 2020 02:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46903 * 110.99664 * 2 1 4 4 C 1.53001 * 109.47350 * 66.04743 * 3 2 1 5 5 C 1.53001 * 109.47019 * 179.97438 * 4 3 2 6 6 C 1.50691 * 109.46856 * 179.97438 * 5 4 3 7 7 H 1.08005 * 120.00565 * 0.02562 * 6 5 4 8 8 C 1.37886 * 120.00017 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99509 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00254 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47120 * 60.00086 * 10 8 6 12 12 H 1.48502 * 109.47267 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47233 * 300.00235 * 10 8 6 14 14 C 1.46893 * 111.00091 * 236.04289 * 2 1 3 15 15 C 1.50701 * 109.47310 * 293.95652 * 14 2 1 16 16 C 1.34852 * 125.96413 * 94.99928 * 15 14 2 17 17 N 1.36319 * 106.68751 * 180.02562 * 16 15 14 18 18 C 1.35425 * 107.39870 * 0.03949 * 17 16 15 19 19 N 1.30096 * 108.62682 * 359.94451 * 18 17 16 20 20 C 1.51039 * 123.98330 * 179.97438 * 18 17 16 21 21 C 1.53403 * 108.24410 * 344.01707 * 20 18 17 22 22 C 1.53220 * 109.20304 * 48.79332 * 21 20 18 23 23 C 1.46468 * 127.77524 * 180.02562 * 17 16 15 24 24 H 1.08996 * 109.47078 * 183.95285 * 1 2 3 25 25 H 1.08999 * 109.46811 * 303.95611 * 1 2 3 26 26 H 1.09000 * 109.47281 * 63.95537 * 1 2 3 27 27 H 1.09002 * 109.46693 * 186.04319 * 3 2 1 28 28 H 1.08997 * 109.46916 * 306.04387 * 3 2 1 29 29 H 1.09002 * 109.46876 * 299.99464 * 4 3 2 30 30 H 1.09002 * 109.47234 * 59.99502 * 4 3 2 31 31 H 1.08997 * 109.47016 * 300.00076 * 5 4 3 32 32 H 1.08997 * 109.46891 * 59.99862 * 5 4 3 33 33 H 0.97003 * 119.99617 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47264 * 173.95323 * 14 2 1 35 35 H 1.09008 * 109.46990 * 53.95590 * 14 2 1 36 36 H 1.07992 * 126.65972 * 0.02562 * 16 15 14 37 37 H 1.09002 * 109.71592 * 103.71935 * 20 18 17 38 38 H 1.09001 * 109.71479 * 224.31837 * 20 18 17 39 39 H 1.09004 * 109.50552 * 168.76588 * 21 20 18 40 40 H 1.08994 * 109.51016 * 288.90422 * 21 20 18 41 41 H 1.08997 * 109.45505 * 170.53651 * 22 21 20 42 42 H 1.09001 * 109.44849 * 50.56772 * 22 21 20 43 43 H 1.08998 * 109.58157 * 282.60169 * 23 17 16 44 44 H 1.08992 * 109.58559 * 43.01857 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3183 5 6 2.1802 3.4857 1.3184 6 6 1.8212 4.1616 2.6166 7 1 1.2583 3.6259 3.3667 8 6 2.2123 5.4635 2.8472 9 7 2.8982 6.1156 1.9340 10 14 1.7679 6.3011 4.4566 11 1 2.3587 5.5432 5.5887 12 1 2.3004 7.6874 4.4567 13 1 0.2906 6.3389 4.6036 14 6 1.9955 -0.7660 -1.1375 15 6 1.6369 -2.2204 -0.9727 16 6 0.5650 -2.8376 -1.5099 17 7 0.6228 -4.1400 -1.1116 18 6 1.7284 -4.2794 -0.3419 19 7 2.3288 -3.1279 -0.2647 20 6 2.1525 -5.5797 0.2988 21 6 0.9581 -6.5418 0.2691 22 6 0.3633 -6.5633 -1.1428 23 6 -0.3142 -5.2189 -1.4328 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3633 0.5740 0.8524 26 1 -0.3634 0.4512 -0.9233 27 1 3.0797 1.3444 -0.1082 28 1 1.5611 1.9273 -0.8309 29 1 0.5471 2.0846 1.4265 30 1 2.0658 1.5016 2.1492 31 1 3.2645 3.4583 1.2104 32 1 1.7462 4.0418 0.4875 33 1 3.1730 7.0316 2.0961 34 1 3.0798 -0.6611 -1.1755 35 1 1.5611 -0.3872 -2.0628 36 1 -0.1923 -2.3875 -2.1345 37 1 2.9850 -6.0097 -0.2581 38 1 2.4543 -5.3999 1.3307 39 1 1.2910 -7.5438 0.5402 40 1 0.2014 -6.2048 0.9775 41 1 -0.3731 -7.3637 -1.2144 42 1 1.1580 -6.7348 -1.8689 43 1 -1.2096 -5.1199 -0.8191 44 1 -0.5841 -5.1666 -2.4874 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365382827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:49 Heat of formation + Delta-G solvation = 23.670676 kcal Electronic energy + Delta-G solvation = -21038.090320 eV Core-core repulsion = 17989.624262 eV Total energy + Delta-G solvation = -3048.466058 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.24863 -38.91399 -37.37144 -35.65341 -34.13541 -33.45137 -31.21507 -29.66123 -28.61303 -28.14304 -25.93763 -24.65174 -23.16770 -23.09336 -21.49278 -20.94795 -19.89256 -18.47381 -17.72533 -17.08557 -16.64084 -16.47135 -16.17627 -15.72301 -15.33327 -15.07041 -15.02073 -14.69669 -14.49584 -14.39663 -14.21474 -13.64717 -13.30017 -13.14675 -12.85435 -12.70622 -12.67042 -12.53637 -12.36041 -12.23039 -12.03045 -11.91531 -11.84683 -11.42752 -11.35841 -11.13341 -10.78049 -10.53907 -10.41655 -9.31402 -9.06402 -8.19304 -6.30444 1.09290 1.39412 1.43407 1.51304 1.92490 2.06108 2.41746 3.13212 3.21286 3.36833 3.64600 3.74713 3.82337 4.05065 4.16063 4.20225 4.27207 4.36990 4.37430 4.45526 4.52754 4.55744 4.64929 4.70691 4.73369 4.85948 4.87660 4.94208 4.99145 5.00553 5.03556 5.10101 5.12198 5.26555 5.29757 5.41448 5.52218 5.75319 5.79965 5.86369 6.13506 6.20288 6.29632 6.35957 6.85606 7.25951 7.38234 8.92564 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038132 B = 0.002653 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.114421 B =10553.543439 C =10756.238158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.550 5.550 3 C 0.070 3.930 4 C -0.088 4.088 5 C 0.027 3.973 6 C -0.545 4.545 7 H 0.057 0.943 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.967 3.033 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.266 1.266 14 C 0.142 3.858 15 C -0.013 4.013 16 C -0.043 4.043 17 N -0.455 5.455 18 C 0.194 3.806 19 N -0.523 5.523 20 C -0.036 4.036 21 C -0.120 4.120 22 C -0.129 4.129 23 C 0.094 3.906 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.032 0.968 29 H 0.051 0.949 30 H 0.043 0.957 31 H -0.010 1.010 32 H -0.007 1.007 33 H 0.264 0.736 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.196 0.804 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.961 -29.757 -9.760 32.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.274 5.274 3 C -0.058 4.058 4 C -0.126 4.126 5 C -0.010 4.010 6 C -0.583 4.583 7 H 0.075 0.925 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.791 3.209 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.190 1.190 14 C 0.014 3.986 15 C -0.142 4.142 16 C -0.177 4.177 17 N -0.138 5.138 18 C -0.069 4.069 19 N -0.243 5.243 20 C -0.074 4.074 21 C -0.158 4.158 22 C -0.167 4.167 23 C -0.027 4.027 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.009 0.991 32 H 0.012 0.988 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.213 0.787 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.084 0.916 41 H 0.135 0.865 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.130 -29.786 -9.000 32.161 hybrid contribution -0.781 1.424 -0.451 1.685 sum -8.911 -28.363 -9.451 31.196 Atomic orbital electron populations 1.22343 0.86897 1.01742 1.00674 1.61876 1.08745 1.13249 1.43565 1.22009 0.99385 0.87259 0.97097 1.21386 0.99744 0.95288 0.96142 1.18956 0.94606 0.91969 0.95501 1.21655 1.35099 0.98410 1.03090 0.92471 1.26007 0.94903 0.98232 1.00769 1.70095 1.39190 1.11794 1.36264 0.85480 0.78958 0.77300 0.79182 1.19314 1.20560 1.19050 1.20188 0.99835 0.87039 0.91549 1.20564 0.95911 0.95504 1.02254 1.22590 1.02966 0.84546 1.07634 1.45574 1.21365 1.09079 1.37744 1.23892 0.87536 0.96976 0.98489 1.69880 1.31609 1.00141 1.22626 1.20354 0.99719 0.86675 1.00696 1.21692 0.96425 1.00370 0.97269 1.21941 1.01851 0.95499 0.97393 1.22361 0.91595 0.85115 1.03595 0.91287 0.92206 0.94717 0.91860 0.94935 0.92992 0.93771 0.99125 0.98817 0.92713 0.91292 0.92230 0.78691 0.88629 0.89511 0.87717 0.91600 0.86493 0.90834 0.88752 0.87526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.12 127.69 1.16 2.10 16 2 N -0.55 -19.13 4.75 -927.03 -4.41 -23.54 16 3 C 0.07 2.73 4.96 86.30 0.43 3.16 16 4 C -0.09 -4.03 5.08 30.60 0.16 -3.87 16 5 C 0.03 1.54 4.97 29.85 0.15 1.69 16 6 C -0.54 -32.78 9.11 25.60 0.23 -32.55 16 7 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 8 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 9 N -0.93 -58.77 13.29 21.45 0.28 -58.49 16 10 Si 0.97 45.95 29.54 68.60 2.03 47.98 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 14 C 0.14 4.34 5.50 85.56 0.47 4.81 16 15 C -0.01 -0.39 5.84 41.41 0.24 -0.15 16 16 C -0.04 -0.94 10.51 83.22 0.88 -0.07 16 17 N -0.45 -8.70 3.13 -513.76 -1.61 -10.31 16 18 C 0.19 4.68 7.65 138.23 1.06 5.74 16 19 N -0.52 -17.01 11.24 -175.69 -1.98 -18.98 16 20 C -0.04 -0.55 6.33 30.09 0.19 -0.36 16 21 C -0.12 -0.96 5.97 30.80 0.18 -0.78 16 22 C -0.13 -0.71 5.94 30.77 0.18 -0.52 16 23 C 0.09 0.84 6.98 86.49 0.60 1.44 16 24 H 0.07 1.90 6.54 -2.39 -0.02 1.89 16 25 H 0.06 1.93 6.30 -2.39 -0.02 1.91 16 26 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 28 H 0.03 1.22 8.12 -2.39 -0.02 1.21 16 29 H 0.05 2.31 6.47 -2.39 -0.02 2.29 16 30 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 31 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.07 2.26 7.93 -2.38 -0.02 2.25 16 35 H 0.06 1.56 8.12 -2.38 -0.02 1.54 16 36 H 0.20 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 40 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 41 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16 43 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -77.08 349.89 1.66 -75.42 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 0.95 Total: 6.91 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 6.40 Total: -18.99 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -7.71 Total: -111.32 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -77.08 1.66 -75.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365382827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.087 kcal (2) G-P(sol) polarization free energy of solvation -77.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds