Wall clock time and date at job start Mon Mar 30 2020 02:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36885 * 126.39872 * 2 1 4 4 C 1.34668 * 106.81739 * 179.74288 * 3 2 1 5 5 N 1.34129 * 108.02266 * 359.97438 * 4 3 2 6 6 C 1.30503 * 109.25413 * 359.97438 * 5 4 3 7 7 C 1.50700 * 125.64576 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.50060 * 180.02562 * 7 6 5 9 9 C 1.53119 * 109.50169 * 60.00600 * 7 6 5 10 10 C 1.53121 * 109.16249 * 182.39999 * 9 7 6 11 11 C 1.53044 * 109.27604 * 57.65301 * 10 9 7 12 12 N 1.46849 * 109.52094 * 300.82444 * 11 10 9 13 13 C 1.46903 * 110.99379 * 185.83906 * 12 11 10 14 14 C 1.53002 * 109.47258 * 66.04517 * 13 12 11 15 15 C 1.53000 * 109.46902 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46816 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00123 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99847 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99836 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99922 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47137 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46621 * 120.00372 * 20 18 16 23 23 H 1.48494 * 109.47315 * 240.00154 * 20 18 16 24 24 C 1.46842 * 111.20369 * 61.74163 * 12 11 10 25 25 H 1.09003 * 109.46957 * 90.02575 * 1 2 3 26 26 H 1.09001 * 109.47065 * 210.02041 * 1 2 3 27 27 H 1.08999 * 109.46660 * 330.01998 * 1 2 3 28 28 H 1.07999 * 126.58807 * 359.70697 * 3 2 1 29 29 H 1.08001 * 125.98408 * 180.02562 * 4 3 2 30 30 H 1.08996 * 109.52371 * 302.31086 * 9 7 6 31 31 H 1.09003 * 109.52391 * 62.43699 * 9 7 6 32 32 H 1.08988 * 109.50661 * 177.59590 * 10 9 7 33 33 H 1.09005 * 109.49959 * 297.71724 * 10 9 7 34 34 H 1.09000 * 109.46058 * 60.83927 * 11 10 9 35 35 H 1.08998 * 109.45939 * 180.80923 * 11 10 9 36 36 H 1.09001 * 109.46877 * 186.04418 * 13 12 11 37 37 H 1.08997 * 109.47170 * 306.04057 * 13 12 11 38 38 H 1.08996 * 109.47110 * 300.00232 * 14 13 12 39 39 H 1.09000 * 109.46723 * 60.00286 * 14 13 12 40 40 H 1.09001 * 109.47513 * 300.00073 * 15 14 13 41 41 H 1.09005 * 109.46996 * 60.00171 * 15 14 13 42 42 H 0.97006 * 119.99722 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.46537 * 178.23771 * 24 12 11 44 44 H 1.09001 * 109.46163 * 58.26572 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 0.0058 5 7 3.5096 -0.6903 0.0098 6 6 2.2663 -1.0870 0.0073 7 6 1.8019 -2.5206 0.0097 8 1 0.7123 -2.5501 0.0062 9 6 2.3271 -3.2260 1.2632 10 6 1.9015 -4.6964 1.2281 11 6 2.4350 -5.3465 -0.0506 12 7 1.9034 -4.6362 -1.2208 13 6 2.2827 -5.3163 -2.4664 14 6 1.5995 -6.6839 -2.5293 15 6 1.9941 -7.3920 -3.8269 16 6 1.3217 -8.7392 -3.8884 17 1 0.6771 -9.0584 -3.0828 18 6 1.5287 -9.5641 -4.9738 19 7 2.3133 -9.1752 -5.9550 20 14 0.6947 -11.2338 -5.0504 21 1 -0.1304 -11.4314 -3.8317 22 1 -0.1752 -11.2978 -6.2523 23 1 1.7261 -12.2992 -5.1286 24 6 2.3382 -3.2337 -1.2336 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3632 0.8902 0.5135 28 1 1.9613 2.1345 -0.0044 29 1 4.4368 1.2612 0.0078 30 1 3.4149 -3.1621 1.2882 31 1 1.9136 -2.7473 2.1508 32 1 2.3086 -5.2140 2.0965 33 1 0.8135 -4.7607 1.2423 34 1 3.5238 -5.2940 -0.0577 35 1 2.1215 -6.3898 -0.0857 36 1 1.9693 -4.7141 -3.3192 37 1 3.3643 -5.4489 -2.4932 38 1 1.9129 -7.2861 -1.6765 39 1 0.5180 -6.5513 -2.5026 40 1 1.6804 -6.7896 -4.6795 41 1 3.0758 -7.5245 -3.8540 42 1 2.4586 -9.7554 -6.7187 43 1 1.9546 -2.7426 -2.1278 44 1 3.4274 -3.1911 -1.2350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365661528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:12 Heat of formation + Delta-G solvation = 44.580575 kcal Electronic energy + Delta-G solvation = -21418.110187 eV Core-core repulsion = 18370.550850 eV Total energy + Delta-G solvation = -3047.559337 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.28507 -38.88649 -34.92202 -34.20032 -33.05727 -31.70132 -30.84707 -28.50036 -27.18717 -26.61888 -24.19580 -23.41155 -22.07708 -21.59003 -20.38617 -19.65160 -19.13122 -17.32406 -16.30273 -15.93145 -15.54013 -15.10134 -14.81094 -14.44328 -14.25530 -13.92667 -13.72679 -13.59082 -13.29658 -13.12438 -12.96848 -12.91956 -12.29911 -12.18494 -11.64605 -11.34926 -11.20695 -10.88073 -10.80707 -10.68057 -10.55133 -10.36481 -10.31381 -10.03672 -9.76545 -9.53147 -9.29146 -9.00194 -8.50225 -8.30624 -8.00423 -5.95795 -3.97611 1.86261 2.57072 3.02208 3.33702 3.40979 3.45450 4.01802 4.38960 4.41884 4.50190 4.60983 4.75889 4.82906 4.89390 5.01752 5.10439 5.19040 5.33594 5.39534 5.40187 5.52461 5.59482 5.71096 5.73737 5.80980 5.91917 5.98520 6.03135 6.14383 6.15477 6.20234 6.37495 6.39229 6.62425 6.76530 6.83255 6.98306 7.18241 7.42889 7.45929 7.73831 7.89090 7.99617 8.05303 8.48612 9.10021 9.66185 11.15724 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032551 B = 0.002969 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.987366 B = 9427.720748 C = 9649.479377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.460 5.460 3 C -0.066 4.066 4 C -0.029 4.029 5 N -0.486 5.486 6 C 0.219 3.781 7 C 0.003 3.997 8 H 0.088 0.912 9 C -0.106 4.106 10 C -0.115 4.115 11 C 0.050 3.950 12 N -0.539 5.539 13 C 0.058 3.942 14 C -0.104 4.104 15 C 0.021 3.979 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.070 3.930 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.172 0.828 29 H 0.168 0.832 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.030 0.970 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.259 0.741 43 H 0.070 0.930 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.891 20.261 15.140 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.142 5.142 3 C -0.198 4.198 4 C -0.177 4.177 5 N -0.204 5.204 6 C -0.044 4.044 7 C -0.017 4.017 8 H 0.107 0.893 9 C -0.144 4.144 10 C -0.153 4.153 11 C -0.078 4.078 12 N -0.263 5.263 13 C -0.069 4.069 14 C -0.142 4.142 15 C -0.017 4.017 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.059 4.059 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.189 0.811 29 H 0.185 0.815 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.809 19.709 15.001 24.927 hybrid contribution -0.243 -0.084 -0.315 0.407 sum -3.052 19.625 14.686 24.701 Atomic orbital electron populations 1.22077 0.76721 1.04635 1.03925 1.45337 1.07595 1.06653 1.54639 1.22662 0.91469 0.92435 1.13257 1.22308 0.96353 0.91313 1.07729 1.70235 1.18517 1.11782 1.19872 1.23275 0.85741 0.90670 1.04760 1.19604 1.00396 0.84592 0.97144 0.89345 1.21565 1.01845 0.95382 0.95639 1.21597 1.01712 0.94640 0.97329 1.22165 0.96954 0.98955 0.89751 1.61978 1.60052 1.01031 1.03280 1.22269 0.97902 0.96826 0.89935 1.21651 0.99610 0.92431 1.00461 1.19084 0.96619 0.94710 0.91266 1.21296 1.28126 1.01459 1.04603 0.92633 1.25037 0.95407 0.98355 0.95791 1.69984 1.37683 1.37042 1.08908 0.86551 0.79355 0.84250 0.77940 1.19729 1.21065 1.21071 1.21931 0.98557 0.89243 0.96169 0.90256 0.89227 0.89670 0.81060 0.81469 0.90954 0.92260 0.91328 0.91125 0.94966 0.89715 0.91330 0.95207 0.93391 0.92653 0.96646 0.96809 0.93129 0.91182 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 10.83 59.85 0.65 1.06 16 2 N -0.46 -4.53 3.15 -121.27 -0.38 -4.91 16 3 C -0.07 -0.61 11.58 -16.56 -0.19 -0.80 16 4 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 5 N -0.49 -6.79 11.25 -10.81 -0.12 -6.91 16 6 C 0.22 2.68 6.42 -155.41 -1.00 1.68 16 7 C 0.00 0.04 2.68 -91.69 -0.25 -0.21 16 8 H 0.09 0.94 6.73 -51.93 -0.35 0.59 16 9 C -0.11 -1.18 5.27 -26.61 -0.14 -1.32 16 10 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 11 C 0.05 0.70 5.29 -3.83 -0.02 0.68 16 12 N -0.54 -8.28 4.65 -234.67 -1.09 -9.37 16 13 C 0.06 1.04 4.96 -3.82 -0.02 1.02 16 14 C -0.10 -2.18 5.09 -26.73 -0.14 -2.32 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.07 0.98 4.72 -3.84 -0.02 0.96 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.47 7.04 -51.93 -0.37 0.11 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.68 8.14 -51.94 -0.42 0.25 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 1.26 6.22 -51.93 -0.32 0.94 16 36 H 0.07 1.24 7.98 -51.93 -0.41 0.82 16 37 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 38 H 0.05 0.99 6.44 -51.93 -0.33 0.66 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.07 0.99 8.01 -51.93 -0.42 0.58 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 349.82 15.07 5.27 5.27 Total: -1.00 -33.15 349.82 -10.31 -43.47 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.66 Total: -3.29 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -2.04 Total: -14.51 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.86 Total: -47.84 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.15 -10.31 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365661528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.049 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds