Wall clock time and date at job start Mon Mar 30 2020 01:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46971 * 2 1 4 4 C 1.52997 * 109.47286 * 119.99953 * 2 1 3 5 5 C 1.50705 * 109.47141 * 300.00262 * 4 2 1 6 6 H 1.08007 * 119.99816 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00393 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00349 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99490 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47415 * 90.00146 * 9 7 5 11 11 H 1.48504 * 109.46934 * 209.99929 * 9 7 5 12 12 H 1.48494 * 109.47612 * 329.99595 * 9 7 5 13 13 C 1.53002 * 109.47401 * 240.00325 * 2 1 3 14 14 N 1.46897 * 109.47315 * 44.01233 * 13 2 1 15 15 C 1.48537 * 110.99936 * 59.69203 * 14 13 2 16 16 C 1.54935 * 103.22587 * 159.72072 * 15 14 13 17 17 C 1.54596 * 102.92445 * 322.58760 * 16 15 14 18 18 H 1.08998 * 110.31165 * 263.04344 * 17 16 15 19 19 N 1.46495 * 110.30692 * 140.87166 * 17 16 15 20 20 C 1.34941 * 126.04137 * 328.99871 * 19 17 16 21 21 C 1.35321 * 107.74568 * 179.83854 * 20 19 17 22 22 C 1.39868 * 107.92087 * 0.42779 * 21 20 19 23 23 N 1.30839 * 108.20216 * 359.73377 * 22 21 20 24 24 C 1.47900 * 111.00243 * 177.08963 * 14 13 2 25 25 H 1.09000 * 109.47287 * 300.00223 * 1 2 3 26 26 H 1.09001 * 109.47083 * 60.00179 * 1 2 3 27 27 H 1.08999 * 109.47340 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47303 * 200.59139 * 3 2 1 29 29 H 1.08996 * 109.47052 * 320.58934 * 3 2 1 30 30 H 1.09003 * 109.47300 * 80.58877 * 3 2 1 31 31 H 1.09001 * 109.47401 * 180.02562 * 4 2 1 32 32 H 1.08999 * 109.46754 * 59.99858 * 4 2 1 33 33 H 0.96996 * 119.99710 * 180.02562 * 8 7 5 34 34 H 1.08994 * 109.47135 * 164.01618 * 13 2 1 35 35 H 1.09004 * 109.46637 * 284.01312 * 13 2 1 36 36 H 1.09001 * 110.66933 * 278.15394 * 15 14 13 37 37 H 1.09001 * 110.66605 * 41.28587 * 15 14 13 38 38 H 1.09000 * 110.72041 * 204.23006 * 16 15 14 39 39 H 1.09001 * 110.87584 * 81.01903 * 16 15 14 40 40 H 1.07999 * 126.12669 * 0.02562 * 20 19 17 41 41 H 1.07997 * 126.04079 * 180.16193 * 21 20 19 42 42 H 1.07998 * 125.89945 * 179.71814 * 22 21 20 43 43 H 1.09000 * 109.91237 * 333.51082 * 24 14 13 44 44 H 1.08996 * 109.91726 * 94.60660 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5376 -0.0108 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8702 -0.4821 3.7320 8 7 1.4322 0.1381 4.8058 9 14 2.9443 -2.0008 3.9033 10 1 4.3720 -1.5949 3.9494 11 1 2.5926 -2.7170 5.1558 12 1 2.7220 -2.8981 2.7412 13 6 2.0400 -0.7212 -1.2493 14 7 1.2642 -0.2846 -2.4178 15 6 1.3892 1.1813 -2.6223 16 6 0.9897 1.3673 -4.1076 17 6 1.5987 0.1201 -4.7884 18 1 2.5641 0.3644 -5.2316 19 7 0.6856 -0.3985 -5.8099 20 6 -0.6615 -0.3265 -5.7808 21 6 -1.1304 -0.9155 -6.9053 22 6 -0.0325 -1.3714 -7.6422 23 7 1.0567 -1.0621 -6.9865 24 6 1.7753 -0.9096 -3.6570 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.0681 1.4645 -0.3614 29 1 1.4125 2.0497 -0.6524 30 1 2.0026 1.8412 1.0138 31 1 3.1300 -0.7208 1.2495 32 1 1.6766 -1.7489 1.2492 33 1 1.6666 -0.1933 5.6867 34 1 3.0925 -0.4827 -1.4022 35 1 1.9265 -1.7975 -1.1192 36 1 0.7034 1.7207 -1.9690 37 1 2.4162 1.5066 -2.4565 38 1 1.4265 2.2800 -4.5131 39 1 -0.0945 1.3773 -4.2199 40 1 -1.2585 0.1235 -5.0013 41 1 -2.1690 -1.0194 -7.1825 42 1 -0.0762 -1.8896 -8.5887 43 1 2.8307 -1.1560 -3.5405 44 1 1.2059 -1.8119 -3.8799 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365848583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:27 Heat of formation + Delta-G solvation = 90.707460 kcal Electronic energy + Delta-G solvation = -22114.602490 eV Core-core repulsion = 19069.043365 eV Total energy + Delta-G solvation = -3045.559125 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39054 -39.42928 -36.49271 -33.19607 -32.04174 -30.41989 -30.18510 -28.60933 -27.20590 -26.48154 -25.71282 -22.79319 -22.20001 -21.44628 -20.67540 -19.91789 -18.08275 -17.63173 -16.77486 -15.89098 -15.51082 -14.74987 -14.59499 -14.48057 -14.09667 -13.74055 -13.47143 -13.15974 -13.08988 -12.72375 -12.51979 -12.42912 -12.07584 -11.96373 -11.88474 -11.53454 -11.09831 -11.03754 -10.88021 -10.82941 -10.64249 -10.49182 -10.26713 -9.80614 -9.72086 -9.54568 -9.26004 -8.94849 -8.69521 -8.52194 -8.34500 -6.02821 -3.99104 1.80008 2.34166 2.74855 3.30102 3.38373 3.41716 3.94092 4.18214 4.35268 4.45997 4.69763 4.75995 4.81221 4.98744 5.11023 5.30167 5.38279 5.42298 5.45830 5.51286 5.54513 5.66029 5.70474 5.75385 5.82091 5.90849 5.94545 6.07512 6.17893 6.36975 6.48508 6.53947 6.56417 6.78969 6.87393 6.92323 7.01914 7.10210 7.15726 7.22629 7.31600 7.46159 7.61069 7.81920 8.56171 9.02487 9.60327 11.10201 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036815 B = 0.003573 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.369087 B = 7834.832518 C = 8021.588290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.149 4.149 4 C -0.003 4.003 5 C -0.508 4.508 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.054 3.946 14 N -0.505 5.505 15 C 0.031 3.969 16 C -0.137 4.137 17 C 0.152 3.848 18 H 0.105 0.895 19 N -0.360 5.360 20 C 0.066 3.934 21 C -0.282 4.282 22 C 0.041 3.959 23 N -0.303 5.303 24 C 0.025 3.975 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.008 0.992 32 H 0.015 0.985 33 H 0.262 0.738 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.174 0.826 41 H 0.145 0.855 42 H 0.180 0.820 43 H 0.056 0.944 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 0.928 -21.504 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.048 4.048 3 C -0.206 4.206 4 C -0.041 4.041 5 C -0.546 4.546 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.074 4.074 14 N -0.229 5.229 15 C -0.096 4.096 16 C -0.176 4.176 17 C 0.049 3.951 18 H 0.123 0.877 19 N -0.142 5.142 20 C -0.081 4.081 21 C -0.311 4.311 22 C -0.145 4.145 23 N -0.124 5.124 24 C -0.104 4.104 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.026 0.974 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.191 0.809 41 H 0.163 0.837 42 H 0.197 0.803 43 H 0.074 0.926 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.186 0.755 -21.093 21.140 hybrid contribution 0.632 -0.745 0.150 0.989 sum -0.554 0.009 -20.943 20.951 Atomic orbital electron populations 1.21630 0.94243 1.00997 1.00427 1.20408 0.96420 0.94938 0.93070 1.22324 0.98565 0.96362 1.03332 1.19621 0.95460 0.95826 0.93164 1.21117 1.31622 1.13163 0.88660 0.90375 1.25009 0.95830 0.96675 0.96026 1.69903 1.46114 1.40580 0.97851 0.86856 0.81104 0.84177 0.77565 1.20508 1.21519 1.19139 1.22592 0.94067 1.00383 0.90324 1.64916 1.51837 1.04574 1.01576 1.23715 1.01256 0.90505 0.94143 1.23066 1.02445 0.96005 0.96111 1.22197 0.92945 0.93890 0.86044 0.87703 1.48799 1.04755 1.44083 1.16523 1.22516 0.85030 1.00716 0.99802 1.21492 1.00257 1.11674 0.97722 1.23852 0.90228 1.00224 1.00175 1.77345 1.23894 1.15722 0.95479 1.23305 0.99783 0.97794 0.89558 0.92195 0.93680 0.93990 0.94582 0.93337 0.90494 0.97409 0.96654 0.92854 0.95037 0.91011 0.87669 0.92801 0.89892 0.89520 0.80903 0.83696 0.80308 0.92596 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 7.70 37.16 0.29 -1.82 16 2 C -0.05 -0.88 0.53 -154.51 -0.08 -0.96 16 3 C -0.15 -2.57 7.19 37.16 0.27 -2.30 16 4 C 0.00 -0.07 3.05 -27.88 -0.08 -0.15 16 5 C -0.51 -13.71 7.91 -34.44 -0.27 -13.98 16 6 H 0.08 2.25 6.12 -52.48 -0.32 1.92 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.42 13.96 55.43 0.77 -26.65 16 9 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.05 0.84 4.15 -3.82 -0.02 0.83 16 14 N -0.50 -6.64 4.26 -230.45 -0.98 -7.63 16 15 C 0.03 0.35 4.20 -1.90 -0.01 0.35 16 16 C -0.14 -1.27 6.61 -24.87 -0.16 -1.43 16 17 C 0.15 1.60 4.11 -66.58 -0.27 1.33 16 18 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 19 N -0.36 -4.20 3.48 -53.55 -0.19 -4.38 16 20 C 0.07 0.69 10.44 -17.22 -0.18 0.51 16 21 C -0.28 -2.79 10.80 -40.01 -0.43 -3.23 16 22 C 0.04 0.43 12.03 -17.37 -0.21 0.22 16 23 N -0.30 -3.90 12.58 30.62 0.39 -3.52 16 24 C 0.02 0.30 6.49 -2.76 -0.02 0.28 16 25 H 0.06 1.23 6.62 -51.93 -0.34 0.88 16 26 H 0.04 0.71 5.74 -51.93 -0.30 0.41 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.57 7.41 -51.93 -0.39 0.19 16 29 H 0.05 0.71 4.77 -51.93 -0.25 0.46 16 30 H 0.08 1.57 6.24 -51.93 -0.32 1.24 16 31 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 32 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.03 0.48 7.61 -51.93 -0.40 0.08 16 35 H 0.07 1.17 8.04 -51.93 -0.42 0.76 16 36 H 0.11 1.25 4.68 -51.93 -0.24 1.01 16 37 H 0.05 0.61 7.05 -51.93 -0.37 0.25 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.77 5.94 -51.93 -0.31 0.46 16 40 H 0.17 1.47 6.87 -52.49 -0.36 1.10 16 41 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.06 0.65 7.69 -51.93 -0.40 0.25 16 44 H 0.08 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -30.71 329.49 -7.86 -38.58 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.87 Total: 0.34 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -1.28 Total: -18.60 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.01 Total: -42.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.71 -7.86 -38.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365848583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.287 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds