Wall clock time and date at job start Mon Mar 30 2020 01:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46971 * 2 1 4 4 C 1.52997 * 109.47286 * 119.99953 * 2 1 3 5 5 C 1.50705 * 109.47141 * 300.00262 * 4 2 1 6 6 H 1.08007 * 119.99816 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00393 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00349 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99490 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47415 * 90.00146 * 9 7 5 11 11 H 1.48504 * 109.46934 * 209.99929 * 9 7 5 12 12 H 1.48494 * 109.47612 * 329.99595 * 9 7 5 13 13 C 1.53002 * 109.47401 * 240.00325 * 2 1 3 14 14 N 1.46897 * 109.47315 * 44.01233 * 13 2 1 15 15 C 1.48537 * 110.99936 * 59.69203 * 14 13 2 16 16 C 1.54935 * 103.22587 * 159.72072 * 15 14 13 17 17 C 1.54596 * 102.92445 * 322.58760 * 16 15 14 18 18 H 1.08998 * 110.31165 * 263.04344 * 17 16 15 19 19 N 1.46495 * 110.30692 * 140.87166 * 17 16 15 20 20 C 1.34941 * 126.04137 * 328.99871 * 19 17 16 21 21 C 1.35321 * 107.74568 * 179.83854 * 20 19 17 22 22 C 1.39868 * 107.92087 * 0.42779 * 21 20 19 23 23 N 1.30839 * 108.20216 * 359.73377 * 22 21 20 24 24 C 1.47900 * 111.00243 * 177.08963 * 14 13 2 25 25 H 1.09000 * 109.47287 * 300.00223 * 1 2 3 26 26 H 1.09001 * 109.47083 * 60.00179 * 1 2 3 27 27 H 1.08999 * 109.47340 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47303 * 200.59139 * 3 2 1 29 29 H 1.08996 * 109.47052 * 320.58934 * 3 2 1 30 30 H 1.09003 * 109.47300 * 80.58877 * 3 2 1 31 31 H 1.09001 * 109.47401 * 180.02562 * 4 2 1 32 32 H 1.08999 * 109.46754 * 59.99858 * 4 2 1 33 33 H 0.96996 * 119.99710 * 180.02562 * 8 7 5 34 34 H 1.08994 * 109.47135 * 164.01618 * 13 2 1 35 35 H 1.09004 * 109.46637 * 284.01312 * 13 2 1 36 36 H 1.09001 * 110.66933 * 278.15394 * 15 14 13 37 37 H 1.09001 * 110.66605 * 41.28587 * 15 14 13 38 38 H 1.09000 * 110.72041 * 204.23006 * 16 15 14 39 39 H 1.09001 * 110.87584 * 81.01903 * 16 15 14 40 40 H 1.07999 * 126.12669 * 0.02562 * 20 19 17 41 41 H 1.07997 * 126.04079 * 180.16193 * 21 20 19 42 42 H 1.07998 * 125.89945 * 179.71814 * 22 21 20 43 43 H 1.09000 * 109.91237 * 333.51082 * 24 14 13 44 44 H 1.08996 * 109.91726 * 94.60660 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5376 -0.0108 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8702 -0.4821 3.7320 8 7 1.4322 0.1381 4.8058 9 14 2.9443 -2.0008 3.9033 10 1 4.3720 -1.5949 3.9494 11 1 2.5926 -2.7170 5.1558 12 1 2.7220 -2.8981 2.7412 13 6 2.0400 -0.7212 -1.2493 14 7 1.2642 -0.2846 -2.4178 15 6 1.3892 1.1813 -2.6223 16 6 0.9897 1.3673 -4.1076 17 6 1.5987 0.1201 -4.7884 18 1 2.5641 0.3644 -5.2316 19 7 0.6856 -0.3985 -5.8099 20 6 -0.6615 -0.3265 -5.7808 21 6 -1.1304 -0.9155 -6.9053 22 6 -0.0325 -1.3714 -7.6422 23 7 1.0567 -1.0621 -6.9865 24 6 1.7753 -0.9096 -3.6570 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.0681 1.4645 -0.3614 29 1 1.4125 2.0497 -0.6524 30 1 2.0026 1.8412 1.0138 31 1 3.1300 -0.7208 1.2495 32 1 1.6766 -1.7489 1.2492 33 1 1.6666 -0.1933 5.6867 34 1 3.0925 -0.4827 -1.4022 35 1 1.9265 -1.7975 -1.1192 36 1 0.7034 1.7207 -1.9690 37 1 2.4162 1.5066 -2.4565 38 1 1.4265 2.2800 -4.5131 39 1 -0.0945 1.3773 -4.2199 40 1 -1.2585 0.1235 -5.0013 41 1 -2.1690 -1.0194 -7.1825 42 1 -0.0762 -1.8896 -8.5887 43 1 2.8307 -1.1560 -3.5405 44 1 1.2059 -1.8119 -3.8799 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365848583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:26 Heat of formation + Delta-G solvation = 71.619541 kcal Electronic energy + Delta-G solvation = -22115.430205 eV Core-core repulsion = 19069.043365 eV Total energy + Delta-G solvation = -3046.386840 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.18235 -40.51193 -37.81795 -34.75254 -33.59511 -31.31140 -30.99895 -30.07947 -28.54466 -27.90938 -26.97339 -24.31019 -23.27086 -22.39458 -21.57567 -20.72793 -19.58769 -18.84890 -18.41986 -16.91360 -16.56529 -16.20393 -15.74490 -15.50578 -15.33543 -15.06291 -14.63642 -14.51211 -14.28798 -14.14035 -13.65770 -13.52411 -13.38375 -13.08489 -12.95193 -12.74781 -12.67317 -12.41072 -12.35748 -12.03697 -11.90828 -11.84195 -11.68615 -11.54934 -11.33069 -10.87482 -10.81720 -10.69727 -10.31673 -9.48316 -9.37409 -8.22282 -6.21927 1.01421 1.34212 1.36904 1.47233 1.58000 2.00418 2.38635 2.94682 3.13011 3.37501 3.48105 3.91133 3.98529 4.04168 4.12112 4.15382 4.20443 4.31879 4.34924 4.54734 4.66152 4.69528 4.78881 4.80301 4.83901 4.89058 4.92293 4.97097 5.00644 5.08497 5.11012 5.20228 5.21452 5.41539 5.45063 5.56921 5.63046 5.74268 5.79939 5.82344 5.95667 6.03606 6.17786 6.40784 6.82798 6.85062 7.40398 8.93823 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036815 B = 0.003573 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.369087 B = 7834.832518 C = 8021.588290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.047 4.047 3 C -0.142 4.142 4 C -0.002 4.002 5 C -0.501 4.501 6 H 0.047 0.953 7 C 0.002 3.998 8 N -0.954 5.954 9 Si 0.938 3.062 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.252 1.252 13 C 0.065 3.935 14 N -0.511 5.511 15 C 0.029 3.971 16 C -0.125 4.125 17 C 0.154 3.846 18 H 0.110 0.890 19 N -0.369 5.369 20 C 0.057 3.943 21 C -0.287 4.287 22 C 0.037 3.963 23 N -0.342 5.342 24 C 0.031 3.969 25 H 0.027 0.973 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.262 0.738 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.191 0.809 41 H 0.166 0.834 42 H 0.205 0.795 43 H 0.059 0.941 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 0.606 -23.997 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.047 4.047 3 C -0.199 4.199 4 C -0.040 4.040 5 C -0.539 4.539 6 H 0.066 0.934 7 C -0.194 4.194 8 N -0.596 5.596 9 Si 0.763 3.237 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.176 1.176 13 C -0.063 4.063 14 N -0.235 5.235 15 C -0.098 4.098 16 C -0.163 4.163 17 C 0.052 3.948 18 H 0.128 0.872 19 N -0.151 5.151 20 C -0.089 4.089 21 C -0.316 4.316 22 C -0.148 4.148 23 N -0.163 5.163 24 C -0.098 4.098 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.077 0.923 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.208 0.792 41 H 0.184 0.816 42 H 0.222 0.778 43 H 0.077 0.923 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.864 0.433 -23.614 23.633 hybrid contribution 0.442 -0.598 0.867 1.142 sum -0.421 -0.165 -22.747 22.751 Atomic orbital electron populations 1.21529 0.94300 1.00355 1.00148 1.20321 0.96328 0.95487 0.92595 1.22250 1.00147 0.95798 1.01659 1.19590 0.95415 0.95439 0.93561 1.21413 1.30071 1.12051 0.90338 0.93435 1.25883 0.97638 1.00008 0.95850 1.70054 1.48356 1.42737 0.98433 0.85843 0.79451 0.80568 0.77854 1.19579 1.21516 1.17572 1.22314 0.94618 0.99425 0.89946 1.64824 1.51455 1.05950 1.01267 1.23725 1.01487 0.89032 0.95600 1.23012 1.02935 0.96168 0.94234 1.22185 0.93405 0.93752 0.85483 0.87213 1.48877 1.05253 1.44462 1.16496 1.22931 0.84832 1.00653 1.00463 1.21845 1.01216 1.11127 0.97435 1.24388 0.89924 0.99583 1.00906 1.77297 1.25322 1.17180 0.96533 1.23207 0.99555 0.97620 0.89441 0.95375 0.90903 0.94786 0.93154 0.90403 0.94387 0.97154 0.97206 0.92909 0.94232 0.91870 0.88123 0.92348 0.87885 0.88866 0.79205 0.81635 0.77828 0.92323 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.81 7.70 71.98 0.55 -3.26 16 2 C -0.05 -1.68 0.53 -52.18 -0.03 -1.71 16 3 C -0.14 -4.73 7.19 71.98 0.52 -4.21 16 4 C 0.00 -0.10 3.05 29.85 0.09 -0.01 16 5 C -0.50 -27.69 7.91 25.60 0.20 -27.49 16 6 H 0.05 2.86 6.12 -2.91 -0.02 2.85 16 7 C 0.00 0.11 5.47 84.65 0.46 0.58 16 8 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 9 Si 0.94 44.61 27.47 68.60 1.88 46.50 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 12 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 13 C 0.07 1.91 4.15 86.30 0.36 2.26 16 14 N -0.51 -12.22 4.26 -883.02 -3.76 -15.98 16 15 C 0.03 0.56 4.20 86.65 0.36 0.93 16 16 C -0.12 -1.88 6.61 31.80 0.21 -1.67 16 17 C 0.15 2.87 4.11 45.87 0.19 3.06 16 18 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 19 N -0.37 -7.83 3.48 -323.34 -1.12 -8.95 16 20 C 0.06 1.06 10.44 83.54 0.87 1.93 16 21 C -0.29 -4.99 10.80 21.99 0.24 -4.75 16 22 C 0.04 0.71 12.03 85.24 1.02 1.74 16 23 N -0.34 -8.24 12.58 -57.02 -0.72 -8.96 16 24 C 0.03 0.67 6.49 86.45 0.56 1.23 16 25 H 0.03 1.16 6.62 -2.39 -0.02 1.15 16 26 H 0.07 2.18 5.74 -2.39 -0.01 2.16 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.51 7.41 -2.39 -0.02 1.49 16 29 H 0.08 2.12 4.77 -2.39 -0.01 2.11 16 30 H 0.04 1.56 6.24 -2.39 -0.01 1.54 16 31 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 32 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 33 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 34 H 0.04 1.10 7.61 -2.39 -0.02 1.08 16 35 H 0.06 1.96 8.04 -2.39 -0.02 1.94 16 36 H 0.10 2.07 4.68 -2.39 -0.01 2.06 16 37 H 0.06 1.12 7.05 -2.39 -0.02 1.11 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.32 5.94 -2.39 -0.01 1.30 16 40 H 0.19 2.66 6.87 -2.91 -0.02 2.64 16 41 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 42 H 0.21 2.49 8.06 -2.91 -0.02 2.47 16 43 H 0.06 1.25 7.69 -2.39 -0.02 1.23 16 44 H 0.07 1.73 7.93 -2.39 -0.02 1.71 16 Total: -1.00 -67.72 329.49 3.12 -64.60 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.93 Total: 13.45 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 5.62 Total: -31.37 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -5.30 Total: -93.18 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.50 kcal Total: -67.72 3.12 -64.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365848583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.221 kcal (2) G-P(sol) polarization free energy of solvation -67.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds