Wall clock time and date at job start Mon Mar 30 2020 01:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.52997 * 109.46991 * 239.99657 * 2 1 3 5 5 C 1.50696 * 109.47055 * 60.00330 * 4 2 1 6 6 H 1.08000 * 120.00290 * 0.02562 * 5 4 2 7 7 C 1.37887 * 120.00079 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99685 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00129 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46879 * 60.00177 * 9 7 5 11 11 H 1.48494 * 109.47196 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47151 * 300.00589 * 9 7 5 13 13 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 14 14 N 1.46898 * 109.47006 * 299.99747 * 13 2 1 15 15 C 1.46903 * 110.99673 * 180.02562 * 14 13 2 16 16 H 1.08995 * 109.42220 * 324.99546 * 15 14 13 17 17 C 1.53030 * 109.42059 * 205.11402 * 15 14 13 18 18 C 1.53428 * 109.69965 * 168.13689 * 17 15 14 19 19 C 1.50886 * 108.14711 * 50.66179 * 18 17 15 20 20 C 1.34565 * 128.32537 * 163.23672 * 19 18 17 21 21 N 1.35200 * 107.61879 * 180.16454 * 20 19 18 22 22 H 0.96997 * 126.00492 * 179.97438 * 21 20 19 23 23 N 1.40314 * 107.99124 * 359.96031 * 21 20 19 24 24 C 1.30124 * 108.12242 * 359.97037 * 23 21 20 25 25 C 1.50946 * 128.28863 * 180.09921 * 24 23 21 26 26 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 27 27 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 28 28 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 31 31 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 32 32 H 1.09001 * 109.47289 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47261 * 300.00382 * 4 2 1 34 34 H 0.96999 * 119.99910 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46801 * 59.99811 * 13 2 1 36 36 H 1.09001 * 109.46998 * 179.97438 * 13 2 1 37 37 H 1.00894 * 110.99951 * 56.04708 * 14 13 2 38 38 H 1.08997 * 109.42704 * 288.28052 * 17 15 14 39 39 H 1.08998 * 109.42573 * 48.12718 * 17 15 14 40 40 H 1.08993 * 109.79422 * 290.96732 * 18 17 15 41 41 H 1.09003 * 109.71935 * 170.30868 * 18 17 15 42 42 H 1.08006 * 126.19307 * 0.18036 * 20 19 18 43 43 H 1.09000 * 109.71349 * 43.61586 * 25 24 23 44 44 H 1.08996 * 109.71946 * 282.97657 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9172 0.8674 -2.3806 7 6 1.8712 -0.4818 -3.7320 8 7 2.6272 -1.5511 -3.8526 9 14 1.2492 0.3992 -5.2572 10 1 1.7444 1.7992 -5.2567 11 1 1.7440 -0.3009 -6.4697 12 1 -0.2359 0.3995 -5.2577 13 6 2.0399 -0.7213 1.2493 14 7 1.5502 -0.0288 2.4487 15 6 2.0216 -0.6946 3.6703 16 1 2.0609 -1.7711 3.5043 17 6 1.0573 -0.3918 4.8194 18 6 1.3675 -1.3083 6.0101 19 6 2.8459 -1.2197 6.2987 20 6 3.5027 -1.5943 7.4118 21 7 4.8141 -1.3247 7.2234 22 1 5.5273 -1.4896 7.8598 23 7 4.9622 -0.7649 5.9454 24 6 3.7862 -0.7029 5.3918 25 6 3.4232 -0.1813 4.0227 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6765 -1.7490 -1.2492 34 1 2.8615 -1.8826 -4.7335 35 1 1.6764 -1.7489 1.2493 36 1 3.1299 -0.7217 1.2492 37 1 0.5437 0.0414 2.4401 38 1 1.1701 0.6491 5.1225 39 1 0.0332 -0.5633 4.4879 40 1 1.1019 -2.3363 5.7636 41 1 0.8022 -0.9815 6.8828 42 1 3.0621 -2.0315 8.2957 43 1 4.1428 -0.5437 3.2885 44 1 3.4241 0.9086 4.0322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371138080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:04 Heat of formation + Delta-G solvation = 47.843236 kcal Electronic energy + Delta-G solvation = -21663.506135 eV Core-core repulsion = 18616.088278 eV Total energy + Delta-G solvation = -3047.417858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54372 -38.19359 -36.36054 -33.27199 -32.25290 -31.91029 -29.27273 -28.47108 -26.83388 -26.27993 -25.41957 -23.62233 -22.14461 -21.21509 -21.11578 -18.87351 -17.89265 -17.57744 -16.18367 -15.82773 -15.18474 -14.79516 -14.49360 -14.37876 -13.84810 -13.72149 -13.37397 -13.23519 -12.80068 -12.52511 -12.39812 -12.15555 -11.94814 -11.76255 -11.40093 -11.23070 -11.01982 -10.85637 -10.75613 -10.68123 -10.44071 -10.30708 -10.16982 -10.06857 -9.62880 -9.44565 -8.95444 -8.78136 -8.55993 -8.27208 -8.04680 -5.91946 -3.91924 1.76978 2.64237 2.72071 3.37674 3.42253 3.44482 4.20606 4.49498 4.55741 4.64699 4.88951 5.08586 5.12780 5.33722 5.42736 5.43816 5.53025 5.54817 5.69336 5.76094 5.84158 5.94414 5.95481 6.02024 6.05270 6.16998 6.24073 6.35580 6.41607 6.55321 6.60406 6.72451 6.85524 6.88951 7.14255 7.26979 7.29730 7.32501 7.46562 7.58462 7.73486 7.77435 7.91496 8.08712 8.53205 9.13450 9.70580 11.19734 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.037018 B = 0.003220 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.204497 B = 8694.558381 C = 9030.686838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.116 4.116 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.070 3.930 14 N -0.683 5.683 15 C 0.092 3.908 16 H 0.045 0.955 17 C -0.118 4.118 18 C -0.038 4.038 19 C -0.237 4.237 20 C 0.056 3.944 21 N -0.489 5.489 22 H 0.437 0.563 23 N -0.290 5.290 24 C 0.092 3.908 25 C -0.028 4.028 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.259 0.741 35 H 0.023 0.977 36 H 0.066 0.934 37 H 0.341 0.659 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.174 0.826 43 H 0.081 0.919 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 0.083 23.268 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.059 4.059 14 N -0.315 5.315 15 C -0.018 4.018 16 H 0.063 0.937 17 C -0.156 4.156 18 C -0.077 4.077 19 C -0.248 4.248 20 C -0.090 4.090 21 N -0.197 5.197 22 H 0.280 0.720 23 N -0.112 5.112 24 C -0.078 4.078 25 C -0.068 4.068 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.161 0.839 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.191 0.809 43 H 0.099 0.901 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.113 0.665 22.990 22.999 hybrid contribution -1.168 -0.820 -0.369 1.474 sum -1.055 -0.154 22.620 22.645 Atomic orbital electron populations 1.21764 0.96127 1.00317 1.00387 1.20628 0.94688 0.96146 0.94435 1.21596 0.99789 0.95790 1.00134 1.19116 0.96110 0.94944 0.90193 1.21213 1.30775 1.11863 0.90640 0.92345 1.25018 0.95432 0.95127 0.99024 1.69959 1.37280 1.23214 1.23351 0.86733 0.79118 0.79849 0.82739 1.20312 1.21485 1.20384 1.22167 0.99858 0.94588 0.89288 1.60496 1.16315 1.53897 1.00828 1.21424 0.93740 0.96423 0.90243 0.93688 1.21747 0.98660 1.00465 0.94700 1.19970 0.89939 0.99764 0.97989 1.20165 0.97481 1.12026 0.95165 1.22031 0.85018 1.01730 1.00189 1.46343 1.07271 1.51636 1.14488 0.71957 1.77059 1.22098 1.19660 0.92417 1.22495 0.90034 0.97784 0.97446 1.20114 0.96687 1.01402 0.88614 0.94759 0.91795 0.94149 0.94184 0.92804 0.93821 0.96702 0.96974 0.93142 0.95843 0.91554 0.83854 0.90957 0.91486 0.91354 0.91197 0.80931 0.90071 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 7.89 37.16 0.29 -2.06 16 2 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 3 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 4 C 0.03 0.86 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -13.92 7.65 -34.44 -0.26 -14.18 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.07 1.19 4.44 -3.82 -0.02 1.18 16 14 N -0.68 -9.53 5.52 -106.51 -0.59 -10.12 16 15 C 0.09 1.14 2.44 -67.51 -0.16 0.97 16 16 H 0.05 0.60 7.75 -51.93 -0.40 0.20 16 17 C -0.12 -1.17 5.27 -26.49 -0.14 -1.31 16 18 C -0.04 -0.33 6.28 -27.57 -0.17 -0.51 16 19 C -0.24 -2.54 5.89 -104.98 -0.62 -3.16 16 20 C 0.06 0.48 11.95 -17.37 -0.21 0.27 16 21 N -0.49 -4.68 7.37 30.35 0.22 -4.45 16 22 H 0.44 2.65 8.96 -182.44 -1.64 1.01 16 23 N -0.29 -3.92 12.68 33.75 0.43 -3.50 16 24 C 0.09 1.20 7.10 -82.35 -0.58 0.61 16 25 C -0.03 -0.37 5.74 -27.57 -0.16 -0.53 16 26 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 27 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 31 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 35 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 36 H 0.07 1.19 7.65 -51.93 -0.40 0.80 16 37 H 0.34 4.48 6.21 -39.29 -0.24 4.24 16 38 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.08 1.15 7.73 -51.93 -0.40 0.75 16 44 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 341.30 15.07 5.14 5.14 Total: -1.00 -31.76 341.30 -9.68 -41.44 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -8.57 Total: 0.83 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -2.04 Total: -19.71 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.80 Total: -44.42 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.76 -9.68 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371138080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.287 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds