Wall clock time and date at job start Mon Mar 30 2020 01:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.52997 * 109.46991 * 239.99657 * 2 1 3 5 5 C 1.50696 * 109.47055 * 60.00330 * 4 2 1 6 6 H 1.08000 * 120.00290 * 0.02562 * 5 4 2 7 7 C 1.37887 * 120.00079 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99685 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00129 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46879 * 60.00177 * 9 7 5 11 11 H 1.48494 * 109.47196 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47151 * 300.00589 * 9 7 5 13 13 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 14 14 N 1.46898 * 109.47006 * 299.99747 * 13 2 1 15 15 C 1.46903 * 110.99673 * 180.02562 * 14 13 2 16 16 H 1.08995 * 109.42220 * 324.99546 * 15 14 13 17 17 C 1.53030 * 109.42059 * 205.11402 * 15 14 13 18 18 C 1.53428 * 109.69965 * 168.13689 * 17 15 14 19 19 C 1.50886 * 108.14711 * 50.66179 * 18 17 15 20 20 C 1.34565 * 128.32537 * 163.23672 * 19 18 17 21 21 N 1.35200 * 107.61879 * 180.16454 * 20 19 18 22 22 H 0.96997 * 126.00492 * 179.97438 * 21 20 19 23 23 N 1.40314 * 107.99124 * 359.96031 * 21 20 19 24 24 C 1.30124 * 108.12242 * 359.97037 * 23 21 20 25 25 C 1.50946 * 128.28863 * 180.09921 * 24 23 21 26 26 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 27 27 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 28 28 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 31 31 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 32 32 H 1.09001 * 109.47289 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47261 * 300.00382 * 4 2 1 34 34 H 0.96999 * 119.99910 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46801 * 59.99811 * 13 2 1 36 36 H 1.09001 * 109.46998 * 179.97438 * 13 2 1 37 37 H 1.00894 * 110.99951 * 56.04708 * 14 13 2 38 38 H 1.08997 * 109.42704 * 288.28052 * 17 15 14 39 39 H 1.08998 * 109.42573 * 48.12718 * 17 15 14 40 40 H 1.08993 * 109.79422 * 290.96732 * 18 17 15 41 41 H 1.09003 * 109.71935 * 170.30868 * 18 17 15 42 42 H 1.08006 * 126.19307 * 0.18036 * 20 19 18 43 43 H 1.09000 * 109.71349 * 43.61586 * 25 24 23 44 44 H 1.08996 * 109.71946 * 282.97657 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9172 0.8674 -2.3806 7 6 1.8712 -0.4818 -3.7320 8 7 2.6272 -1.5511 -3.8526 9 14 1.2492 0.3992 -5.2572 10 1 1.7444 1.7992 -5.2567 11 1 1.7440 -0.3009 -6.4697 12 1 -0.2359 0.3995 -5.2577 13 6 2.0399 -0.7213 1.2493 14 7 1.5502 -0.0288 2.4487 15 6 2.0216 -0.6946 3.6703 16 1 2.0609 -1.7711 3.5043 17 6 1.0573 -0.3918 4.8194 18 6 1.3675 -1.3083 6.0101 19 6 2.8459 -1.2197 6.2987 20 6 3.5027 -1.5943 7.4118 21 7 4.8141 -1.3247 7.2234 22 1 5.5273 -1.4896 7.8598 23 7 4.9622 -0.7649 5.9454 24 6 3.7862 -0.7029 5.3918 25 6 3.4232 -0.1813 4.0227 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6765 -1.7490 -1.2492 34 1 2.8615 -1.8826 -4.7335 35 1 1.6764 -1.7489 1.2493 36 1 3.1299 -0.7217 1.2492 37 1 0.5437 0.0414 2.4401 38 1 1.1701 0.6491 5.1225 39 1 0.0332 -0.5633 4.4879 40 1 1.1019 -2.3363 5.7636 41 1 0.8022 -0.9815 6.8828 42 1 3.0621 -2.0315 8.2957 43 1 4.1428 -0.5437 3.2885 44 1 3.4241 0.9086 4.0322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371138080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:04 Heat of formation + Delta-G solvation = 27.359727 kcal Electronic energy + Delta-G solvation = -21664.394367 eV Core-core repulsion = 18616.088278 eV Total energy + Delta-G solvation = -3048.306089 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.34470 -39.49434 -37.65581 -34.85910 -33.64541 -32.99692 -30.32558 -29.39263 -28.75795 -27.83638 -26.81859 -25.01886 -23.58868 -22.23263 -21.89648 -19.82078 -19.37332 -18.42572 -18.29783 -16.95381 -16.50661 -16.06708 -15.83512 -15.50206 -15.15265 -14.92852 -14.51572 -14.42564 -14.12620 -13.86088 -13.64182 -13.54255 -13.46956 -12.97337 -12.72200 -12.70426 -12.43998 -12.25847 -12.21065 -12.15496 -12.00153 -11.89278 -11.66706 -11.32306 -11.17383 -10.80493 -10.66644 -10.48140 -10.33352 -9.30448 -9.26347 -8.11999 -6.19144 1.01092 1.41978 1.44598 1.51768 1.80445 2.03428 2.45423 3.19820 3.21763 3.63090 3.91611 4.05014 4.15728 4.26524 4.27514 4.39829 4.43914 4.50904 4.58749 4.72151 4.75204 4.79280 4.86652 4.96450 5.00775 5.05068 5.10302 5.13690 5.25059 5.27085 5.27227 5.33986 5.46609 5.55320 5.57664 5.62887 5.69093 5.75581 5.91686 5.95681 6.15836 6.39568 6.53532 6.64344 6.76783 6.96284 7.48129 9.00328 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.037018 B = 0.003220 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.204497 B = 8694.558381 C = 9030.686838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.055 4.055 3 C -0.107 4.107 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.068 0.932 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.957 3.043 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.084 3.916 14 N -0.676 5.676 15 C 0.097 3.903 16 H 0.035 0.965 17 C -0.112 4.112 18 C -0.032 4.032 19 C -0.259 4.259 20 C 0.075 3.925 21 N -0.481 5.481 22 H 0.451 0.549 23 N -0.337 5.337 24 C 0.070 3.930 25 C -0.025 4.025 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.026 0.974 30 H 0.038 0.962 31 H 0.070 0.930 32 H -0.020 1.020 33 H -0.017 1.017 34 H 0.259 0.741 35 H 0.017 0.983 36 H 0.050 0.950 37 H 0.351 0.649 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.220 0.780 43 H 0.056 0.944 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 0.832 25.548 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.056 4.056 3 C -0.164 4.164 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.086 0.914 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.046 4.046 14 N -0.309 5.309 15 C -0.013 4.013 16 H 0.053 0.947 17 C -0.150 4.150 18 C -0.070 4.070 19 C -0.271 4.271 20 C -0.071 4.071 21 N -0.191 5.191 22 H 0.297 0.703 23 N -0.160 5.160 24 C -0.098 4.098 25 C -0.065 4.065 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.089 0.911 32 H -0.002 1.002 33 H 0.001 0.999 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.172 0.828 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.236 0.764 43 H 0.075 0.925 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.923 1.431 25.288 25.402 hybrid contribution -0.456 -1.093 -0.983 1.539 sum -2.379 0.338 24.305 24.424 Atomic orbital electron populations 1.21677 0.94331 1.00474 1.01376 1.20496 0.96068 0.96008 0.92995 1.21503 0.98925 0.95313 1.00639 1.19007 0.93857 0.94006 0.92914 1.21611 1.30243 1.11912 0.91417 0.91445 1.25946 0.95722 0.95914 1.02646 1.70114 1.38911 1.25032 1.24056 0.85623 0.79019 0.78738 0.78422 1.19362 1.21454 1.19089 1.21834 0.98837 0.94165 0.89731 1.60391 1.16895 1.53450 1.00189 1.21413 0.94056 0.95485 0.90356 0.94727 1.21712 0.98487 1.00791 0.93984 1.19994 0.88988 0.99770 0.98296 1.20494 0.98329 1.12841 0.95414 1.22730 0.84082 0.99547 1.00774 1.46396 1.08518 1.50643 1.13521 0.70306 1.76959 1.22997 1.21533 0.94517 1.22525 0.90915 0.98738 0.97607 1.19998 0.96701 1.00985 0.88853 0.90961 0.93508 0.94433 0.95491 0.94302 0.91064 1.00160 0.99863 0.93212 0.96494 0.93191 0.82789 0.91020 0.89893 0.90901 0.88667 0.76356 0.92489 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.29 7.89 71.98 0.57 -3.73 16 2 C -0.06 -2.21 0.60 -52.18 -0.03 -2.24 16 3 C -0.11 -4.10 8.06 71.98 0.58 -3.51 16 4 C 0.04 2.10 4.04 29.85 0.12 2.22 16 5 C -0.51 -28.79 7.65 25.60 0.20 -28.59 16 6 H 0.07 3.59 5.68 -2.91 -0.02 3.58 16 7 C -0.01 -0.34 5.46 84.66 0.46 0.13 16 8 N -0.94 -58.47 13.29 21.45 0.28 -58.18 16 9 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 13 C 0.08 2.92 4.44 86.31 0.38 3.30 16 14 N -0.68 -18.13 5.52 -490.87 -2.71 -20.84 16 15 C 0.10 2.32 2.44 45.05 0.11 2.43 16 16 H 0.03 0.91 7.75 -2.39 -0.02 0.90 16 17 C -0.11 -1.93 5.27 30.75 0.16 -1.77 16 18 C -0.03 -0.46 6.28 30.05 0.19 -0.27 16 19 C -0.26 -5.00 5.89 -20.10 -0.12 -5.11 16 20 C 0.08 1.05 11.95 83.33 1.00 2.04 16 21 N -0.48 -8.35 7.37 -57.88 -0.43 -8.77 16 22 H 0.45 4.62 8.96 -213.19 -1.91 2.71 16 23 N -0.34 -9.09 12.68 -47.14 -0.60 -9.69 16 24 C 0.07 1.82 7.10 43.44 0.31 2.12 16 25 C -0.03 -0.68 5.74 30.05 0.17 -0.51 16 26 H 0.07 2.00 6.57 -2.39 -0.02 1.99 16 27 H 0.05 1.81 6.62 -2.39 -0.02 1.80 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 1.59 6.62 -2.39 -0.02 1.57 16 31 H 0.07 2.33 7.60 -2.39 -0.02 2.31 16 32 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 33 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 34 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.02 0.61 8.05 -2.39 -0.02 0.59 16 36 H 0.05 1.90 7.65 -2.39 -0.02 1.88 16 37 H 0.35 8.29 6.21 -89.70 -0.56 7.73 16 38 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 39 H 0.08 1.19 7.85 -2.39 -0.02 1.17 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.22 0.87 8.06 -2.91 -0.02 0.84 16 43 H 0.06 1.74 7.73 -2.39 -0.02 1.73 16 44 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -71.65 341.30 1.20 -70.45 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -1.47 Total: 13.58 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 4.10 Total: -33.49 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -3.45 Total: -97.49 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -71.65 1.20 -70.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371138080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.808 kcal (2) G-P(sol) polarization free energy of solvation -71.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds