Wall clock time and date at job start Mon Mar 30 2020 02:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34948 * 126.03993 * 2 1 4 4 C 1.35315 * 107.74520 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.03610 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47279 * 90.00230 * 5 4 3 7 7 C 1.53000 * 109.46935 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.46719 * 180.02562 * 7 6 5 9 9 C 1.46845 * 111.00132 * 294.21067 * 8 7 6 10 10 C 1.53040 * 109.52431 * 174.16118 * 9 8 7 11 11 C 1.53124 * 109.27808 * 59.17883 * 10 9 8 12 12 C 1.50697 * 109.57200 * 182.41121 * 11 10 9 13 13 H 1.08007 * 119.99961 * 119.71804 * 12 11 10 14 14 C 1.37870 * 120.00046 * 299.70617 * 12 11 10 15 15 N 1.31514 * 119.99996 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00279 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46949 * 90.00446 * 16 14 12 18 18 H 1.48494 * 109.47655 * 210.00360 * 16 14 12 19 19 H 1.48501 * 109.47110 * 330.00895 * 16 14 12 20 20 C 1.53126 * 109.15798 * 302.34333 * 11 10 9 21 21 C 1.46848 * 110.99812 * 169.99881 * 8 7 6 22 22 C 1.39870 * 107.92205 * 0.02562 * 4 3 2 23 23 N 1.30839 * 108.19862 * 359.97438 * 22 4 3 24 24 H 1.09008 * 109.47064 * 89.99169 * 1 2 3 25 25 H 1.08998 * 109.47431 * 209.99518 * 1 2 3 26 26 H 1.08999 * 109.46741 * 329.99840 * 1 2 3 27 27 H 1.08007 * 126.12251 * 0.27272 * 3 2 1 28 28 H 1.08995 * 109.47101 * 210.00393 * 5 4 3 29 29 H 1.09005 * 109.47445 * 329.99822 * 5 4 3 30 30 H 1.08995 * 109.47187 * 300.00110 * 6 5 4 31 31 H 1.09000 * 109.46780 * 59.99611 * 6 5 4 32 32 H 1.09006 * 109.47023 * 299.99714 * 7 6 5 33 33 H 1.08992 * 109.47332 * 60.00044 * 7 6 5 34 34 H 1.09003 * 109.46103 * 294.17453 * 9 8 7 35 35 H 1.08999 * 109.46039 * 54.14505 * 9 8 7 36 36 H 1.08999 * 109.50411 * 299.23653 * 10 9 8 37 37 H 1.09001 * 109.50447 * 179.11796 * 10 9 8 38 38 H 1.08998 * 109.52521 * 62.25000 * 11 10 9 39 39 H 0.97003 * 120.00142 * 179.97438 * 15 14 12 40 40 H 1.08991 * 109.50130 * 297.71350 * 20 11 10 41 41 H 1.09004 * 109.50009 * 177.59206 * 20 11 10 42 42 H 1.08999 * 109.46328 * 305.85336 * 21 8 7 43 43 H 1.08990 * 109.46359 * 65.83746 * 21 8 7 44 44 H 1.07997 * 125.89658 * 179.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 0.0006 5 6 4.7680 1.5452 0.0002 6 6 5.1821 1.8435 1.4426 7 6 6.4254 2.7352 1.4422 8 7 6.8233 3.0211 2.8271 9 6 5.8065 3.8308 3.5103 10 6 6.1826 3.9858 4.9856 11 6 7.5534 4.6601 5.0897 12 6 7.9569 4.7626 6.5381 13 1 8.8588 4.2787 6.8829 14 6 7.1749 5.4742 7.4228 15 7 6.0765 6.0632 7.0030 16 14 7.6754 5.6019 9.2180 17 1 8.5390 6.7951 9.4074 18 1 6.4609 5.7309 10.0626 19 1 8.4244 4.3814 9.6111 20 6 8.5848 3.8218 4.3293 21 6 8.1390 3.6716 2.8729 22 6 3.5346 -0.7322 0.0003 23 7 2.2891 -1.1328 0.0002 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 1.9281 2.1193 0.0042 28 1 5.5822 1.0337 -0.5131 29 1 4.5444 2.4797 -0.5143 30 1 4.3679 2.3550 1.9560 31 1 5.4057 0.9090 1.9571 32 1 7.2395 2.2232 0.9290 33 1 6.2022 3.6697 0.9276 34 1 5.7521 4.8145 3.0441 35 1 4.8373 3.3380 3.4324 36 1 6.2236 3.0033 5.4559 37 1 5.4358 4.5999 5.4890 38 1 7.5025 5.6580 4.6542 39 1 5.5261 6.5636 7.6256 40 1 8.6636 2.8369 4.7892 41 1 9.5543 4.3189 4.3636 42 1 8.8640 3.0633 2.3322 43 1 8.0737 4.6561 2.4099 44 1 4.4054 -1.3711 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397124119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:25 Heat of formation + Delta-G solvation = 62.297022 kcal Electronic energy + Delta-G solvation = -21164.623964 eV Core-core repulsion = 18117.832870 eV Total energy + Delta-G solvation = -3046.791094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.28877 -38.29527 -35.24465 -33.70235 -32.69963 -31.21934 -29.72589 -29.45236 -27.35958 -25.78372 -24.12412 -22.35139 -21.74376 -21.21567 -20.46451 -20.07117 -18.51731 -16.94689 -16.32365 -15.59988 -15.18530 -15.04210 -14.57263 -14.39084 -14.01874 -13.81991 -13.25726 -13.08940 -13.02590 -12.78911 -12.53507 -12.42413 -12.33743 -11.78187 -11.65237 -11.19818 -11.19169 -10.90543 -10.65634 -10.64887 -10.33136 -10.30566 -10.13763 -9.90847 -9.54331 -9.34789 -8.89722 -8.63409 -8.42320 -8.24604 -7.64614 -5.92987 -3.97953 1.76410 2.38717 2.70782 3.33903 3.40509 3.44475 4.33082 4.48270 4.52879 4.70292 4.85877 4.96386 5.06209 5.11521 5.24992 5.37140 5.43738 5.54955 5.65030 5.73415 5.85311 5.90296 5.95505 5.98610 6.02134 6.19572 6.29080 6.39672 6.43184 6.50757 6.57862 6.70161 6.72983 6.87327 6.92664 7.15386 7.24360 7.51463 7.57266 7.69864 7.80164 7.90691 8.11311 8.21886 8.53745 9.05811 9.66111 11.13170 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024581 B = 0.003098 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.814572 B = 9035.869644 C = 9762.758957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.053 3.947 4 C -0.228 4.228 5 C -0.039 4.039 6 C -0.109 4.109 7 C 0.055 3.945 8 N -0.537 5.537 9 C 0.056 3.944 10 C -0.104 4.104 11 C 0.048 3.952 12 C -0.509 4.509 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.107 4.107 21 C 0.061 3.939 22 C 0.053 3.947 23 N -0.302 5.302 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.172 0.828 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.024 0.976 34 H 0.019 0.981 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.091 0.909 38 H 0.019 0.981 39 H 0.258 0.742 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.022 0.978 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 -8.770 -16.141 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.163 5.163 3 C -0.093 4.093 4 C -0.239 4.239 5 C -0.078 4.078 6 C -0.147 4.147 7 C -0.074 4.074 8 N -0.262 5.262 9 C -0.071 4.071 10 C -0.142 4.142 11 C 0.029 3.971 12 C -0.547 4.547 13 H 0.072 0.928 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.145 4.145 21 C -0.067 4.067 22 C -0.133 4.133 23 N -0.124 5.124 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.189 0.811 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.037 0.963 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.364 -10.107 -15.814 20.974 hybrid contribution 0.561 1.659 0.587 1.847 sum -8.803 -8.448 -15.227 19.512 Atomic orbital electron populations 1.21825 0.74423 1.04499 1.03127 1.48427 1.06533 1.03926 1.57429 1.22350 0.90976 0.93299 1.02640 1.20144 0.94612 0.94020 1.15155 1.19866 0.93339 0.97388 0.97194 1.21596 0.97189 1.00392 0.95519 1.22087 0.97307 0.97667 0.90317 1.61983 1.03082 1.47471 1.13624 1.22298 0.93603 0.93495 0.97686 1.21653 1.01594 1.00200 0.90801 1.18683 0.90534 0.93446 0.94431 1.21225 1.08217 1.31571 0.93681 0.92782 1.24969 0.95068 0.95516 0.98522 1.69883 1.14230 1.34422 1.34674 0.86640 0.77928 0.78351 0.85342 1.20841 1.21330 1.19956 1.21681 0.99154 1.00835 0.92791 1.22096 0.89983 0.95623 0.98966 1.23818 0.95088 0.94730 0.99685 1.77320 1.01834 1.08388 1.24836 0.90963 0.89407 0.89489 0.81099 0.91276 0.91771 0.91979 0.91223 0.91595 0.95768 0.96227 0.92462 0.93903 0.89125 0.96252 0.93181 0.92514 0.93301 0.92551 0.96009 0.80102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 11.47 59.85 0.69 1.33 16 2 N -0.38 -4.06 4.01 -68.16 -0.27 -4.33 16 3 C 0.05 0.54 11.40 -17.22 -0.20 0.34 16 4 C -0.23 -2.53 5.35 -105.05 -0.56 -3.09 16 5 C -0.04 -0.40 5.70 -27.88 -0.16 -0.56 16 6 C -0.11 -1.39 5.12 -26.73 -0.14 -1.53 16 7 C 0.05 0.78 4.96 -3.82 -0.02 0.76 16 8 N -0.54 -9.72 4.66 -234.67 -1.09 -10.82 16 9 C 0.06 1.13 5.29 -3.83 -0.02 1.11 16 10 C -0.10 -2.51 5.12 -26.65 -0.14 -2.65 16 11 C 0.05 1.21 2.16 -91.64 -0.20 1.01 16 12 C -0.51 -14.19 8.56 -34.44 -0.29 -14.48 16 13 H 0.05 1.49 7.75 -52.48 -0.41 1.09 16 14 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 15 N -0.89 -25.68 11.37 55.43 0.63 -25.05 16 16 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.11 -2.30 5.32 -26.64 -0.14 -2.44 16 21 C 0.06 1.12 5.46 -3.83 -0.02 1.10 16 22 C 0.05 0.61 11.96 -17.36 -0.21 0.40 16 23 N -0.30 -3.88 12.57 30.62 0.39 -3.49 16 24 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 25 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 33 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 1.06 6.21 -51.93 -0.32 0.74 16 36 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.91 8.01 -51.93 -0.42 0.50 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -31.58 349.49 -9.30 -40.88 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.69 Total: -1.87 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -1.50 Total: -17.10 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: -0.35 Total: -43.69 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.58 -9.30 -40.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397124119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.177 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds