Wall clock time and date at job start Mon Mar 30 2020 02:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34948 * 126.03993 * 2 1 4 4 C 1.35315 * 107.74520 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.03610 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47279 * 90.00230 * 5 4 3 7 7 C 1.53000 * 109.46935 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.46719 * 180.02562 * 7 6 5 9 9 C 1.46845 * 111.00132 * 294.21067 * 8 7 6 10 10 C 1.53040 * 109.52431 * 174.16118 * 9 8 7 11 11 C 1.53124 * 109.27808 * 59.17883 * 10 9 8 12 12 C 1.50697 * 109.57200 * 182.41121 * 11 10 9 13 13 H 1.08007 * 119.99961 * 119.71804 * 12 11 10 14 14 C 1.37870 * 120.00046 * 299.70617 * 12 11 10 15 15 N 1.31514 * 119.99996 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00279 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46949 * 90.00446 * 16 14 12 18 18 H 1.48494 * 109.47655 * 210.00360 * 16 14 12 19 19 H 1.48501 * 109.47110 * 330.00895 * 16 14 12 20 20 C 1.53126 * 109.15798 * 302.34333 * 11 10 9 21 21 C 1.46848 * 110.99812 * 169.99881 * 8 7 6 22 22 C 1.39870 * 107.92205 * 0.02562 * 4 3 2 23 23 N 1.30839 * 108.19862 * 359.97438 * 22 4 3 24 24 H 1.09008 * 109.47064 * 89.99169 * 1 2 3 25 25 H 1.08998 * 109.47431 * 209.99518 * 1 2 3 26 26 H 1.08999 * 109.46741 * 329.99840 * 1 2 3 27 27 H 1.08007 * 126.12251 * 0.27272 * 3 2 1 28 28 H 1.08995 * 109.47101 * 210.00393 * 5 4 3 29 29 H 1.09005 * 109.47445 * 329.99822 * 5 4 3 30 30 H 1.08995 * 109.47187 * 300.00110 * 6 5 4 31 31 H 1.09000 * 109.46780 * 59.99611 * 6 5 4 32 32 H 1.09006 * 109.47023 * 299.99714 * 7 6 5 33 33 H 1.08992 * 109.47332 * 60.00044 * 7 6 5 34 34 H 1.09003 * 109.46103 * 294.17453 * 9 8 7 35 35 H 1.08999 * 109.46039 * 54.14505 * 9 8 7 36 36 H 1.08999 * 109.50411 * 299.23653 * 10 9 8 37 37 H 1.09001 * 109.50447 * 179.11796 * 10 9 8 38 38 H 1.08998 * 109.52521 * 62.25000 * 11 10 9 39 39 H 0.97003 * 120.00142 * 179.97438 * 15 14 12 40 40 H 1.08991 * 109.50130 * 297.71350 * 20 11 10 41 41 H 1.09004 * 109.50009 * 177.59206 * 20 11 10 42 42 H 1.08999 * 109.46328 * 305.85336 * 21 8 7 43 43 H 1.08990 * 109.46359 * 65.83746 * 21 8 7 44 44 H 1.07997 * 125.89658 * 179.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 0.0006 5 6 4.7680 1.5452 0.0002 6 6 5.1821 1.8435 1.4426 7 6 6.4254 2.7352 1.4422 8 7 6.8233 3.0211 2.8271 9 6 5.8065 3.8308 3.5103 10 6 6.1826 3.9858 4.9856 11 6 7.5534 4.6601 5.0897 12 6 7.9569 4.7626 6.5381 13 1 8.8588 4.2787 6.8829 14 6 7.1749 5.4742 7.4228 15 7 6.0765 6.0632 7.0030 16 14 7.6754 5.6019 9.2180 17 1 8.5390 6.7951 9.4074 18 1 6.4609 5.7309 10.0626 19 1 8.4244 4.3814 9.6111 20 6 8.5848 3.8218 4.3293 21 6 8.1390 3.6716 2.8729 22 6 3.5346 -0.7322 0.0003 23 7 2.2891 -1.1328 0.0002 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 1.9281 2.1193 0.0042 28 1 5.5822 1.0337 -0.5131 29 1 4.5444 2.4797 -0.5143 30 1 4.3679 2.3550 1.9560 31 1 5.4057 0.9090 1.9571 32 1 7.2395 2.2232 0.9290 33 1 6.2022 3.6697 0.9276 34 1 5.7521 4.8145 3.0441 35 1 4.8373 3.3380 3.4324 36 1 6.2236 3.0033 5.4559 37 1 5.4358 4.5999 5.4890 38 1 7.5025 5.6580 4.6542 39 1 5.5261 6.5636 7.6256 40 1 8.6636 2.8369 4.7892 41 1 9.5543 4.3189 4.3636 42 1 8.8640 3.0633 2.3322 43 1 8.0737 4.6561 2.4099 44 1 4.4054 -1.3711 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397124119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:25 Heat of formation + Delta-G solvation = 43.585533 kcal Electronic energy + Delta-G solvation = -21165.435355 eV Core-core repulsion = 18117.832870 eV Total energy + Delta-G solvation = -3047.602485 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.05932 -39.84385 -36.55140 -35.06298 -33.82455 -32.74679 -31.43408 -30.51498 -28.37412 -27.24595 -25.39656 -23.93474 -23.33987 -21.97385 -21.71471 -20.90701 -20.30968 -18.43091 -17.68411 -16.80530 -16.30501 -16.28687 -16.11737 -15.48879 -15.19276 -15.01284 -14.70606 -14.40697 -14.19021 -14.04737 -13.76925 -13.65456 -13.27601 -13.14103 -12.87268 -12.79098 -12.64688 -12.42695 -12.33163 -12.00972 -11.93880 -11.83042 -11.60470 -11.31492 -11.18199 -10.76863 -10.58325 -10.35482 -10.32767 -9.22074 -9.08662 -8.06714 -6.19927 0.99588 1.41124 1.42011 1.52405 1.74805 1.89003 2.44631 3.14056 3.20219 3.71481 4.02209 4.10325 4.23883 4.28511 4.36957 4.37503 4.43867 4.45964 4.53699 4.64653 4.67572 4.69042 4.79514 4.81755 4.90077 4.93791 4.98915 5.02579 5.08062 5.11989 5.17793 5.27376 5.37818 5.54188 5.55542 5.59956 5.65076 5.78557 6.03224 6.06993 6.19532 6.36583 6.42787 6.45698 6.78064 6.91785 7.47562 8.97803 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024581 B = 0.003098 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.814572 B = 9035.869644 C = 9762.758957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.386 5.386 3 C 0.052 3.948 4 C -0.246 4.246 5 C -0.027 4.027 6 C -0.099 4.099 7 C 0.056 3.944 8 N -0.546 5.546 9 C 0.070 3.930 10 C -0.095 4.095 11 C 0.044 3.956 12 C -0.533 4.533 13 H 0.050 0.950 14 C 0.011 3.989 15 N -0.918 5.918 16 Si 0.953 3.047 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.270 1.270 20 C -0.101 4.101 21 C 0.066 3.934 22 C 0.042 3.958 23 N -0.341 5.341 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.198 0.802 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.031 0.969 34 H 0.012 0.988 35 H 0.072 0.928 36 H 0.027 0.973 37 H 0.059 0.941 38 H -0.013 1.013 39 H 0.260 0.740 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.089 0.911 43 H 0.020 0.980 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.235 -9.103 -17.249 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.168 5.168 3 C -0.094 4.094 4 C -0.258 4.258 5 C -0.066 4.066 6 C -0.138 4.138 7 C -0.071 4.071 8 N -0.271 5.271 9 C -0.057 4.057 10 C -0.134 4.134 11 C 0.025 3.975 12 C -0.571 4.571 13 H 0.068 0.932 14 C -0.187 4.187 15 N -0.557 5.557 16 Si 0.779 3.221 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.139 4.139 21 C -0.061 4.061 22 C -0.143 4.143 23 N -0.163 5.163 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.128 0.872 27 H 0.215 0.785 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.030 0.970 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.006 0.994 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.038 0.962 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.315 -10.455 -16.939 21.978 hybrid contribution 0.504 1.771 0.927 2.062 sum -8.811 -8.684 -16.013 20.235 Atomic orbital electron populations 1.22142 0.72399 1.05626 1.04496 1.48792 1.07844 1.03528 1.56683 1.22853 0.90914 0.94343 1.01302 1.20327 0.95336 0.93928 1.16182 1.19759 0.93449 0.97932 0.95435 1.21495 0.96022 0.99156 0.97093 1.22196 0.98632 0.98420 0.87899 1.61944 1.02396 1.46529 1.16242 1.22025 0.94945 0.93807 0.94960 1.21419 1.00119 0.98283 0.93576 1.18664 0.92485 0.92635 0.93717 1.21602 1.08282 1.31865 0.95363 0.93181 1.25747 0.95061 0.95202 1.02715 1.70020 1.14975 1.34765 1.35984 0.85635 0.77711 0.78517 0.80266 1.20139 1.20859 1.19430 1.21558 0.98235 0.99470 0.94627 1.22036 0.90908 0.96416 0.96763 1.24175 0.95333 0.95495 0.99336 1.77252 1.02683 1.10000 1.26353 0.89456 0.89478 0.87221 0.78499 0.90044 0.90605 0.93335 0.92502 0.89497 0.95051 0.96964 0.90951 0.95421 0.92259 0.99442 0.93128 0.93207 0.92878 0.89312 0.96155 0.78707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 11.47 127.77 1.47 2.49 16 2 N -0.39 -7.70 4.01 -369.55 -1.48 -9.19 16 3 C 0.05 0.97 11.40 83.54 0.95 1.92 16 4 C -0.25 -5.03 5.35 -20.14 -0.11 -5.14 16 5 C -0.03 -0.48 5.70 29.85 0.17 -0.31 16 6 C -0.10 -2.32 5.12 30.59 0.16 -2.17 16 7 C 0.06 1.43 4.96 86.30 0.43 1.86 16 8 N -0.55 -18.85 4.66 -896.36 -4.17 -23.03 16 9 C 0.07 2.79 5.29 86.33 0.46 3.24 16 10 C -0.10 -4.71 5.12 30.65 0.16 -4.56 16 11 C 0.04 2.26 2.16 -11.46 -0.02 2.23 16 12 C -0.53 -30.33 8.56 25.60 0.22 -30.11 16 13 H 0.05 2.81 7.75 -2.91 -0.02 2.79 16 14 C 0.01 0.62 5.31 84.65 0.45 1.07 16 15 N -0.92 -53.98 11.37 21.44 0.24 -53.73 16 16 Si 0.95 44.55 29.54 68.60 2.03 46.57 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 20 C -0.10 -4.31 5.32 30.65 0.16 -4.15 16 21 C 0.07 2.32 5.46 86.33 0.47 2.79 16 22 C 0.04 0.93 11.96 85.24 1.02 1.95 16 23 N -0.34 -8.52 12.57 -57.02 -0.72 -9.24 16 24 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.05 1.26 6.43 -2.39 -0.02 1.24 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.91 7.99 -2.38 -0.02 1.89 16 33 H 0.03 0.79 8.12 -2.39 -0.02 0.77 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 2.63 6.21 -2.39 -0.01 2.62 16 36 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 3.28 6.17 -2.39 -0.01 3.26 16 38 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 40 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.09 2.56 8.01 -2.39 -0.02 2.55 16 43 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.20 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -69.13 349.49 2.82 -66.31 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.95 Total: 11.18 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 5.98 Total: -28.87 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -6.13 Total: -95.19 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.13 2.82 -66.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397124119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.896 kcal (2) G-P(sol) polarization free energy of solvation -69.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds