Wall clock time and date at job start Mon Mar 30 2020 02:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35039 * 126.39794 * 2 1 4 4 N 1.30504 * 108.70033 * 179.97438 * 3 2 1 5 5 C 1.34121 * 109.25569 * 0.02562 * 4 3 2 6 6 C 1.34666 * 108.02399 * 359.97438 * 5 4 3 7 7 C 1.50696 * 126.59589 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47358 * 85.02511 * 7 6 5 9 9 C 1.52997 * 109.47477 * 180.02562 * 8 7 6 10 10 N 1.46893 * 109.47451 * 179.97438 * 9 8 7 11 11 C 1.46846 * 110.99946 * 66.04396 * 10 9 8 12 12 C 1.53040 * 109.52543 * 174.16109 * 11 10 9 13 13 C 1.53125 * 109.27539 * 59.17942 * 12 11 10 14 14 C 1.53115 * 109.15790 * 302.34596 * 13 12 11 15 15 H 1.09000 * 109.50416 * 297.67291 * 14 13 12 16 16 C 1.50703 * 109.49868 * 177.59724 * 14 13 12 17 17 H 1.07997 * 119.99769 * 239.99622 * 16 14 13 18 18 C 1.37878 * 120.00210 * 60.00154 * 16 14 13 19 19 N 1.31514 * 119.99874 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00284 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47135 * 59.99375 * 20 18 16 22 22 H 1.48494 * 109.47349 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47085 * 299.99984 * 20 18 16 24 24 C 1.46846 * 110.99980 * 301.83414 * 10 9 8 25 25 H 1.08997 * 109.47624 * 90.02671 * 1 2 3 26 26 H 1.09000 * 109.47276 * 210.02556 * 1 2 3 27 27 H 1.08997 * 109.47335 * 330.02379 * 1 2 3 28 28 H 1.08003 * 125.65338 * 0.02562 * 3 2 1 29 29 H 1.08001 * 125.99017 * 179.97438 * 5 4 3 30 30 H 1.08995 * 109.47384 * 205.02519 * 7 6 5 31 31 H 1.08998 * 109.46926 * 325.02646 * 7 6 5 32 32 H 1.09004 * 109.46771 * 300.00040 * 8 7 6 33 33 H 1.08998 * 109.46991 * 60.00176 * 8 7 6 34 34 H 1.09008 * 109.46726 * 300.00092 * 9 8 7 35 35 H 1.09004 * 109.47127 * 59.99422 * 9 8 7 36 36 H 1.09002 * 109.46290 * 294.17534 * 11 10 9 37 37 H 1.09005 * 109.46472 * 54.14415 * 11 10 9 38 38 H 1.09000 * 109.50580 * 179.12063 * 12 11 10 39 39 H 1.08996 * 109.50562 * 299.24176 * 12 11 10 40 40 H 1.08994 * 109.52151 * 62.25256 * 13 12 11 41 41 H 1.09003 * 109.52056 * 182.37998 * 13 12 11 42 42 H 0.97002 * 120.00016 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.46484 * 305.85615 * 24 10 9 44 44 H 1.09005 * 109.46166 * 65.82145 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6902 0.0006 5 6 3.5460 -0.6505 0.0004 6 6 2.2772 -1.1018 0.0002 7 6 1.8363 -2.5428 -0.0006 8 6 1.8068 -3.0680 1.4362 9 6 1.3597 -4.5312 1.4354 10 7 1.3320 -5.0356 2.8147 11 6 0.2973 -4.3546 3.6034 12 6 0.1986 -5.0029 4.9861 13 6 1.5542 -4.8999 5.6907 14 6 2.6226 -5.5744 4.8258 15 1 2.3863 -6.6327 4.7151 16 6 3.9701 -5.4259 5.4841 17 1 4.7685 -4.9117 4.9697 18 6 4.1836 -5.9465 6.7428 19 7 3.2112 -6.5722 7.3692 20 14 5.8541 -5.7630 7.5584 21 1 6.1768 -4.3211 7.7070 22 1 5.8241 -6.4037 8.8977 23 1 6.8895 -6.4179 6.7189 24 6 2.6510 -4.9095 3.4478 25 1 -0.3634 -0.0005 -1.0276 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 1.9334 2.1144 0.0004 29 1 4.4368 -1.2612 0.0003 30 1 0.8395 -2.6176 -0.4352 31 1 2.5352 -3.1363 -0.5900 32 1 2.8036 -2.9933 1.8708 33 1 1.1079 -2.4745 2.0257 34 1 0.3630 -4.6063 1.0005 35 1 2.0589 -5.1244 0.8459 36 1 0.5586 -3.3021 3.7136 37 1 -0.6624 -4.4389 3.0934 38 1 -0.5586 -4.4872 5.5767 39 1 -0.0762 -6.0521 4.8774 40 1 1.8111 -3.8504 5.8345 41 1 1.5002 -5.3977 6.6589 42 1 3.3616 -6.9388 8.2546 43 1 3.4010 -5.3969 2.8248 44 1 2.9013 -3.8544 3.5587 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397794638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:35 Heat of formation + Delta-G solvation = 28.765475 kcal Electronic energy + Delta-G solvation = -21828.528562 eV Core-core repulsion = 18780.283430 eV Total energy + Delta-G solvation = -3048.245131 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.00494 -40.06942 -36.51205 -35.04454 -34.58525 -33.03359 -31.67431 -29.84633 -27.77330 -26.94688 -26.62570 -24.35860 -23.18761 -22.39139 -22.19497 -20.79201 -19.93325 -18.45128 -17.89880 -16.83182 -16.61604 -16.27343 -16.15119 -15.63654 -15.22350 -15.01319 -14.83086 -14.63454 -14.30022 -14.08533 -13.87308 -13.75040 -13.48450 -13.22230 -12.89499 -12.87184 -12.81503 -12.59552 -12.46199 -12.45355 -11.90961 -11.71202 -11.38059 -11.37839 -10.91421 -10.84189 -10.65540 -10.48179 -10.37335 -9.35736 -8.97258 -8.08197 -6.22155 1.09108 1.40501 1.41577 1.49258 1.95885 2.18538 2.42402 3.18507 3.21169 3.68692 3.89856 3.92580 4.01088 4.15403 4.26061 4.29542 4.35356 4.42133 4.44715 4.48587 4.64022 4.66295 4.67568 4.69912 4.77833 4.87506 4.93297 4.95907 4.98149 5.10655 5.14938 5.20823 5.37229 5.41352 5.48041 5.53973 5.63324 5.79827 5.98038 6.14055 6.22641 6.33341 6.44007 6.47798 6.90648 7.12672 7.45612 8.96132 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.004058 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.575602 B = 6897.901015 C = 7730.224850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.460 5.460 3 C 0.173 3.827 4 N -0.541 5.541 5 C -0.063 4.063 6 C -0.018 4.018 7 C -0.028 4.028 8 C -0.140 4.140 9 C 0.058 3.942 10 N -0.548 5.548 11 C 0.067 3.933 12 C -0.113 4.113 13 C -0.103 4.103 14 C 0.051 3.949 15 H -0.004 1.004 16 C -0.538 4.538 17 H 0.048 0.952 18 C 0.016 3.984 19 N -0.915 5.915 20 Si 0.951 3.049 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.271 1.271 24 C 0.084 3.916 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.237 0.763 29 H 0.163 0.837 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.024 0.976 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.017 0.983 41 H 0.056 0.944 42 H 0.260 0.740 43 H 0.053 0.947 44 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.739 11.455 -16.161 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.142 5.142 3 C -0.109 4.109 4 N -0.260 5.260 5 C -0.210 4.210 6 C -0.134 4.134 7 C -0.067 4.067 8 C -0.180 4.180 9 C -0.069 4.069 10 N -0.271 5.271 11 C -0.060 4.060 12 C -0.151 4.151 13 C -0.142 4.142 14 C 0.032 3.968 15 H 0.015 0.985 16 C -0.576 4.576 17 H 0.066 0.934 18 C -0.183 4.183 19 N -0.554 5.554 20 Si 0.776 3.224 21 H -0.200 1.200 22 H -0.207 1.207 23 H -0.196 1.196 24 C -0.044 4.044 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.253 0.747 29 H 0.180 0.820 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -10.394 11.367 -16.007 22.214 hybrid contribution 0.844 0.339 1.025 1.371 sum -9.550 11.706 -14.982 21.276 Atomic orbital electron populations 1.22362 0.74160 1.06116 1.05122 1.45560 1.09076 1.05944 1.53655 1.25562 0.85120 0.94949 1.05286 1.70185 1.21731 1.12723 1.21312 1.22252 0.97015 0.91305 1.10421 1.21539 0.90982 0.91110 1.09755 1.19967 1.03328 0.86720 0.96694 1.22126 1.01136 0.97949 0.96744 1.22306 1.02935 0.92327 0.89371 1.62154 1.05422 1.56596 1.02888 1.22014 0.95363 0.94780 0.93862 1.21610 0.97234 1.00418 0.95826 1.21446 0.94551 0.97423 1.00739 1.18604 0.93515 0.93957 0.90753 0.98540 1.21508 0.98093 1.36175 1.01864 0.93365 1.25687 1.00016 0.94779 0.97829 1.70023 1.33197 1.37986 1.14199 0.85727 0.80587 0.78331 0.77707 1.19956 1.20720 1.19588 1.21918 0.89489 0.97127 0.95862 0.88643 0.89165 0.87367 0.74679 0.82008 0.88778 0.88717 0.93805 0.92780 0.88604 0.90499 0.95761 0.88959 0.91388 0.93027 0.96433 0.92541 0.93059 0.92863 0.96650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 10.82 127.77 1.38 1.92 16 2 N -0.46 -8.38 3.15 -537.91 -1.70 -10.07 16 3 C 0.17 3.58 12.56 180.26 2.26 5.85 16 4 N -0.54 -15.69 11.25 -200.32 -2.25 -17.94 16 5 C -0.06 -1.76 11.79 83.52 0.98 -0.77 16 6 C -0.02 -0.40 6.21 40.95 0.25 -0.15 16 7 C -0.03 -0.50 5.40 29.85 0.16 -0.34 16 8 C -0.14 -3.32 4.50 30.59 0.14 -3.18 16 9 C 0.06 1.43 5.36 86.30 0.46 1.89 16 10 N -0.55 -18.77 4.86 -896.36 -4.35 -23.12 16 11 C 0.07 2.14 5.05 86.33 0.44 2.58 16 12 C -0.11 -4.31 6.09 30.65 0.19 -4.12 16 13 C -0.10 -5.05 5.02 30.67 0.15 -4.89 16 14 C 0.05 2.63 2.26 -11.49 -0.03 2.60 16 15 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 16 C -0.54 -30.67 8.56 25.60 0.22 -30.45 16 17 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 18 C 0.02 0.89 5.30 84.66 0.45 1.34 16 19 N -0.91 -54.06 11.35 21.45 0.24 -53.82 16 20 Si 0.95 44.79 29.54 68.60 2.03 46.81 16 21 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 C 0.08 3.56 4.06 86.33 0.35 3.91 16 25 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.09 0.74 7.69 -2.39 -0.02 0.72 16 27 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.24 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.09 1.21 7.64 -2.39 -0.02 1.19 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.32 6.50 -2.39 -0.02 1.30 16 33 H 0.05 1.33 6.68 -2.39 -0.02 1.32 16 34 H 0.10 1.82 8.06 -2.38 -0.02 1.80 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.02 0.78 6.76 -2.39 -0.02 0.76 16 37 H 0.09 2.31 8.06 -2.38 -0.02 2.29 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 3.12 6.15 -2.39 -0.01 3.11 16 42 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.05 2.27 8.12 -2.39 -0.02 2.25 16 44 H 0.02 0.67 6.61 -2.38 -0.02 0.66 16 Total: -1.00 -71.96 344.04 2.34 -69.63 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.95 Total: 12.33 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 7.42 Total: -23.82 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -8.06 Total: -104.95 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -71.96 2.34 -69.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397794638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.394 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds