Wall clock time and date at job start Mon Mar 30 2020 02:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.35051 * 126.39543 * 2 1 4 4 N 1.30498 * 108.69793 * 180.02562 * 3 2 1 5 5 C 1.34129 * 109.25737 * 359.74961 * 4 3 2 6 6 C 1.34669 * 108.01862 * 0.40474 * 5 4 3 7 7 C 1.50704 * 126.58798 * 179.87234 * 6 5 4 8 8 C 1.52994 * 109.47139 * 84.68531 * 7 6 5 9 9 C 1.53002 * 109.47274 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47055 * 179.97438 * 9 8 7 11 11 C 1.46847 * 111.00144 * 66.04768 * 10 9 8 12 12 C 1.53044 * 109.51335 * 185.83239 * 11 10 9 13 13 C 1.53117 * 109.27792 * 300.82256 * 12 11 10 14 14 C 1.53127 * 109.15989 * 57.65607 * 13 12 11 15 15 H 1.08997 * 109.50037 * 62.28538 * 14 13 12 16 16 C 1.50694 * 109.50110 * 182.36245 * 14 13 12 17 17 H 1.08002 * 119.99775 * 120.00089 * 16 14 13 18 18 C 1.37877 * 120.00467 * 300.00260 * 16 14 13 19 19 N 1.31512 * 119.99474 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00189 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47119 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47179 * 119.99915 * 20 18 16 23 23 H 1.48506 * 109.46847 * 239.99821 * 20 18 16 24 24 C 1.46830 * 110.98168 * 190.26186 * 10 9 8 25 25 H 1.08998 * 109.47242 * 270.00133 * 1 2 3 26 26 H 1.09005 * 109.47752 * 30.00117 * 1 2 3 27 27 H 1.09003 * 109.47016 * 150.00411 * 1 2 3 28 28 H 1.07997 * 125.64790 * 0.02562 * 3 2 1 29 29 H 1.07996 * 125.98990 * 180.24558 * 5 4 3 30 30 H 1.08999 * 109.47151 * 324.68352 * 7 6 5 31 31 H 1.08996 * 109.47044 * 204.68619 * 7 6 5 32 32 H 1.08999 * 109.47245 * 59.99878 * 8 7 6 33 33 H 1.09006 * 109.47175 * 300.00065 * 8 7 6 34 34 H 1.08999 * 109.47028 * 59.99813 * 9 8 7 35 35 H 1.08996 * 109.47036 * 299.99606 * 9 8 7 36 36 H 1.09002 * 109.46448 * 65.81961 * 11 10 9 37 37 H 1.08994 * 109.45958 * 305.84326 * 11 10 9 38 38 H 1.09001 * 109.49858 * 60.76701 * 12 11 10 39 39 H 1.09002 * 109.49779 * 180.84687 * 12 11 10 40 40 H 1.08997 * 109.52073 * 177.56286 * 13 12 11 41 41 H 1.08998 * 109.52156 * 297.68928 * 13 12 11 42 42 H 0.97004 * 120.00010 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.46742 * 54.13906 * 24 10 9 44 44 H 1.09004 * 109.45381 * 294.16241 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5095 0.6904 -0.0006 5 6 3.5460 -0.6504 0.0046 6 6 2.2772 -1.1017 -0.0005 7 6 1.8364 -2.5428 -0.0003 8 6 1.8083 -3.0673 1.4367 9 6 1.3601 -4.5302 1.4371 10 7 1.3338 -5.0339 2.8168 11 6 0.3005 -4.3518 3.6064 12 6 0.3984 -4.7951 5.0680 13 6 0.2111 -6.3126 5.1497 14 6 1.2694 -6.9971 4.2801 15 1 2.2624 -6.7640 4.6644 16 6 1.0562 -8.4886 4.3087 17 1 0.8558 -9.0231 3.3919 18 6 1.1167 -9.1709 5.5053 19 7 1.3612 -8.5200 6.6216 20 14 0.8531 -11.0198 5.5406 21 1 0.5974 -11.5098 4.1623 22 1 2.0653 -11.6824 6.0851 23 1 -0.3139 -11.3370 6.4027 24 6 1.1464 -6.4900 2.8414 25 1 -0.3633 0.0000 1.0276 26 1 -0.3635 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.9333 2.1144 0.0004 29 1 4.4368 -1.2610 0.0092 30 1 2.5347 -3.1365 -0.5902 31 1 0.8392 -2.6178 -0.4339 32 1 1.1100 -2.4736 2.0266 33 1 2.8055 -2.9923 1.8704 34 1 2.0581 -5.1242 0.8471 35 1 0.3628 -4.6048 1.0036 36 1 -0.6839 -4.6074 3.2145 37 1 0.4478 -3.2737 3.5432 38 1 1.3777 -4.5273 5.4646 39 1 -0.3783 -4.3001 5.6511 40 1 0.3230 -6.6382 6.1838 41 1 -0.7834 -6.5767 4.7902 42 1 1.4042 -9.0000 7.4635 43 1 1.9078 -6.9647 2.2226 44 1 0.1579 -6.7354 2.4531 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397794641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:38 Heat of formation + Delta-G solvation = 46.061620 kcal Electronic energy + Delta-G solvation = -21432.415765 eV Core-core repulsion = 18384.920651 eV Total energy + Delta-G solvation = -3047.495114 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21027 -38.37315 -35.22907 -34.15192 -33.12976 -31.55508 -29.94820 -28.89583 -27.21044 -25.53383 -24.96518 -22.69899 -21.72461 -21.56431 -20.44878 -19.93936 -18.59415 -17.21180 -16.35810 -15.89623 -15.41947 -15.15292 -14.55974 -14.48885 -14.12638 -13.72767 -13.37697 -13.25629 -13.17517 -13.03096 -12.90907 -12.59030 -12.26458 -11.95815 -11.83795 -11.42289 -11.21094 -10.96055 -10.78214 -10.62397 -10.48114 -10.06363 -10.02774 -9.83272 -9.72846 -9.46433 -9.02007 -8.68726 -8.42276 -8.29731 -7.65433 -5.96719 -4.02913 1.88961 2.60096 3.06457 3.30001 3.38128 3.41572 4.32414 4.40899 4.47281 4.56416 4.63380 4.76664 4.82725 5.05052 5.22426 5.25224 5.33145 5.39671 5.51743 5.60510 5.68429 5.72141 5.82781 5.86471 6.07340 6.09887 6.23227 6.33202 6.37974 6.43823 6.51776 6.64080 6.72072 6.76060 6.97962 7.02856 7.22792 7.41254 7.67883 7.76480 7.84092 7.95158 8.09742 8.18697 8.49160 9.01484 9.61397 11.09250 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039324 B = 0.003002 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.864714 B = 9326.018286 C = 9495.391786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.461 5.461 3 C 0.171 3.829 4 N -0.494 5.494 5 C -0.028 4.028 6 C -0.015 4.015 7 C -0.043 4.043 8 C -0.108 4.108 9 C 0.056 3.944 10 N -0.538 5.538 11 C 0.062 3.938 12 C -0.118 4.118 13 C -0.110 4.110 14 C 0.054 3.946 15 H 0.034 0.966 16 C -0.514 4.514 17 H 0.053 0.947 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.068 3.932 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.202 0.798 29 H 0.169 0.831 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.023 0.977 36 H 0.020 0.980 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.028 0.972 42 H 0.259 0.741 43 H 0.059 0.941 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 16.019 -12.626 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.144 5.144 3 C -0.110 4.110 4 N -0.212 5.212 5 C -0.175 4.175 6 C -0.129 4.129 7 C -0.082 4.082 8 C -0.147 4.147 9 C -0.073 4.073 10 N -0.263 5.263 11 C -0.065 4.065 12 C -0.156 4.156 13 C -0.148 4.148 14 C 0.035 3.965 15 H 0.053 0.947 16 C -0.553 4.553 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.059 4.059 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.219 0.781 29 H 0.186 0.814 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -2.569 16.604 -12.226 20.779 hybrid contribution -1.811 -1.605 -0.260 2.434 sum -4.380 14.999 -12.485 20.001 Atomic orbital electron populations 1.22036 0.76832 1.04520 1.03804 1.45310 1.07511 1.06840 1.54760 1.24880 0.85744 0.93353 1.07066 1.70256 1.19396 1.12188 1.19335 1.22086 0.95897 0.90975 1.08565 1.21333 0.91250 0.89873 1.10465 1.20060 1.01652 0.87923 0.98576 1.21593 1.03036 0.95553 0.94477 1.22056 0.99033 0.95046 0.91127 1.61973 1.47862 1.06542 1.09889 1.22055 0.91997 0.97151 0.95345 1.21681 1.00713 0.99463 0.93725 1.21650 0.98213 0.90456 1.04528 1.18667 0.95868 0.93786 0.88133 0.94750 1.21189 1.48475 0.92346 0.93267 0.92827 1.24940 0.95165 0.98065 0.95725 1.69903 1.49478 1.35167 0.98144 0.86577 0.77716 0.85943 0.77981 1.19871 1.21022 1.21131 1.22302 0.97923 0.84202 1.01434 0.90376 0.89510 0.89625 0.78122 0.81387 0.89381 0.91600 0.92329 0.90512 0.91023 0.95878 0.96176 0.92432 0.92091 0.93688 0.89116 0.95267 0.93124 0.92268 0.96450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 11.00 59.84 0.66 1.05 16 2 N -0.46 -4.35 3.15 -121.37 -0.38 -4.73 16 3 C 0.17 1.74 12.56 -90.37 -1.14 0.60 16 4 N -0.49 -6.55 11.25 -14.66 -0.16 -6.72 16 5 C -0.03 -0.34 11.79 -17.81 -0.21 -0.55 16 6 C -0.01 -0.16 6.21 -81.60 -0.51 -0.67 16 7 C -0.04 -0.42 5.55 -27.88 -0.15 -0.57 16 8 C -0.11 -1.30 5.13 -26.73 -0.14 -1.43 16 9 C 0.06 0.79 4.96 -3.82 -0.02 0.77 16 10 N -0.54 -9.77 4.65 -234.68 -1.09 -10.87 16 11 C 0.06 1.09 5.29 -3.83 -0.02 1.07 16 12 C -0.12 -2.32 6.09 -26.65 -0.16 -2.48 16 13 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 14 C 0.05 1.36 2.26 -91.69 -0.21 1.15 16 15 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 16 C -0.51 -14.09 8.57 -34.44 -0.30 -14.38 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.38 11.35 55.43 0.63 -24.75 16 20 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.07 1.44 4.68 -3.84 -0.02 1.42 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.09 0.43 7.12 -51.93 -0.37 0.06 16 28 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.56 7.09 -51.93 -0.37 0.19 16 32 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.98 7.98 -51.93 -0.41 0.56 16 35 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.88 6.22 -51.93 -0.32 0.56 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.06 1.23 8.01 -51.93 -0.42 0.82 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -31.45 346.42 -10.83 -42.28 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.58 Total: -1.50 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -2.44 Total: -15.15 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -1.01 Total: -47.06 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.45 -10.83 -42.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397794641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.338 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds