Wall clock time and date at job start Mon Mar 30 2020 02:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.35051 * 126.39543 * 2 1 4 4 N 1.30498 * 108.69793 * 180.02562 * 3 2 1 5 5 C 1.34129 * 109.25737 * 359.74961 * 4 3 2 6 6 C 1.34669 * 108.01862 * 0.40474 * 5 4 3 7 7 C 1.50704 * 126.58798 * 179.87234 * 6 5 4 8 8 C 1.52994 * 109.47139 * 84.68531 * 7 6 5 9 9 C 1.53002 * 109.47274 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47055 * 179.97438 * 9 8 7 11 11 C 1.46847 * 111.00144 * 66.04768 * 10 9 8 12 12 C 1.53044 * 109.51335 * 185.83239 * 11 10 9 13 13 C 1.53117 * 109.27792 * 300.82256 * 12 11 10 14 14 C 1.53127 * 109.15989 * 57.65607 * 13 12 11 15 15 H 1.08997 * 109.50037 * 62.28538 * 14 13 12 16 16 C 1.50694 * 109.50110 * 182.36245 * 14 13 12 17 17 H 1.08002 * 119.99775 * 120.00089 * 16 14 13 18 18 C 1.37877 * 120.00467 * 300.00260 * 16 14 13 19 19 N 1.31512 * 119.99474 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00189 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47119 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47179 * 119.99915 * 20 18 16 23 23 H 1.48506 * 109.46847 * 239.99821 * 20 18 16 24 24 C 1.46830 * 110.98168 * 190.26186 * 10 9 8 25 25 H 1.08998 * 109.47242 * 270.00133 * 1 2 3 26 26 H 1.09005 * 109.47752 * 30.00117 * 1 2 3 27 27 H 1.09003 * 109.47016 * 150.00411 * 1 2 3 28 28 H 1.07997 * 125.64790 * 0.02562 * 3 2 1 29 29 H 1.07996 * 125.98990 * 180.24558 * 5 4 3 30 30 H 1.08999 * 109.47151 * 324.68352 * 7 6 5 31 31 H 1.08996 * 109.47044 * 204.68619 * 7 6 5 32 32 H 1.08999 * 109.47245 * 59.99878 * 8 7 6 33 33 H 1.09006 * 109.47175 * 300.00065 * 8 7 6 34 34 H 1.08999 * 109.47028 * 59.99813 * 9 8 7 35 35 H 1.08996 * 109.47036 * 299.99606 * 9 8 7 36 36 H 1.09002 * 109.46448 * 65.81961 * 11 10 9 37 37 H 1.08994 * 109.45958 * 305.84326 * 11 10 9 38 38 H 1.09001 * 109.49858 * 60.76701 * 12 11 10 39 39 H 1.09002 * 109.49779 * 180.84687 * 12 11 10 40 40 H 1.08997 * 109.52073 * 177.56286 * 13 12 11 41 41 H 1.08998 * 109.52156 * 297.68928 * 13 12 11 42 42 H 0.97004 * 120.00010 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.46742 * 54.13906 * 24 10 9 44 44 H 1.09004 * 109.45381 * 294.16241 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5095 0.6904 -0.0006 5 6 3.5460 -0.6504 0.0046 6 6 2.2772 -1.1017 -0.0005 7 6 1.8364 -2.5428 -0.0003 8 6 1.8083 -3.0673 1.4367 9 6 1.3601 -4.5302 1.4371 10 7 1.3338 -5.0339 2.8168 11 6 0.3005 -4.3518 3.6064 12 6 0.3984 -4.7951 5.0680 13 6 0.2111 -6.3126 5.1497 14 6 1.2694 -6.9971 4.2801 15 1 2.2624 -6.7640 4.6644 16 6 1.0562 -8.4886 4.3087 17 1 0.8558 -9.0231 3.3919 18 6 1.1167 -9.1709 5.5053 19 7 1.3612 -8.5200 6.6216 20 14 0.8531 -11.0198 5.5406 21 1 0.5974 -11.5098 4.1623 22 1 2.0653 -11.6824 6.0851 23 1 -0.3139 -11.3370 6.4027 24 6 1.1464 -6.4900 2.8414 25 1 -0.3633 0.0000 1.0276 26 1 -0.3635 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.9333 2.1144 0.0004 29 1 4.4368 -1.2610 0.0092 30 1 2.5347 -3.1365 -0.5902 31 1 0.8392 -2.6178 -0.4339 32 1 1.1100 -2.4736 2.0266 33 1 2.8055 -2.9923 1.8704 34 1 2.0581 -5.1242 0.8471 35 1 0.3628 -4.6048 1.0036 36 1 -0.6839 -4.6074 3.2145 37 1 0.4478 -3.2737 3.5432 38 1 1.3777 -4.5273 5.4646 39 1 -0.3783 -4.3001 5.6511 40 1 0.3230 -6.6382 6.1838 41 1 -0.7834 -6.5767 4.7902 42 1 1.4042 -9.0000 7.4635 43 1 1.9078 -6.9647 2.2226 44 1 0.1579 -6.7354 2.4531 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397794641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:38 Heat of formation + Delta-G solvation = 28.561678 kcal Electronic energy + Delta-G solvation = -21433.174619 eV Core-core repulsion = 18384.920651 eV Total energy + Delta-G solvation = -3048.253969 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.96558 -39.89675 -36.52830 -35.03929 -34.59775 -33.08160 -31.70372 -29.98920 -27.75014 -26.94318 -26.61940 -24.06124 -23.37841 -22.34090 -21.74913 -20.70676 -20.33696 -18.43172 -17.86865 -16.81035 -16.59687 -16.37418 -16.27718 -15.52065 -15.32984 -14.96822 -14.68454 -14.53961 -14.28571 -14.19165 -13.84769 -13.76111 -13.42527 -13.29067 -12.95009 -12.87923 -12.71774 -12.67619 -12.46329 -12.17792 -11.87243 -11.71489 -11.49105 -11.37363 -10.88316 -10.80162 -10.64549 -10.44936 -10.37153 -9.24515 -9.08703 -8.07616 -6.21945 1.12945 1.40355 1.42081 1.53370 1.98590 2.22863 2.43039 3.11532 3.19341 3.73271 3.93810 3.96492 4.03577 4.18303 4.24035 4.25782 4.39349 4.43079 4.49059 4.52801 4.62143 4.66541 4.67311 4.73591 4.78350 4.88692 4.90601 4.91674 5.00351 5.10006 5.17459 5.20892 5.37289 5.41268 5.52417 5.54797 5.64148 5.84030 5.97942 6.13972 6.22961 6.36126 6.42699 6.47453 6.91549 7.16750 7.46126 8.97148 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039324 B = 0.003002 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.864714 B = 9326.018286 C = 9495.391786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.460 5.460 3 C 0.174 3.826 4 N -0.539 5.539 5 C -0.057 4.057 6 C -0.018 4.018 7 C -0.033 4.033 8 C -0.095 4.095 9 C 0.057 3.943 10 N -0.553 5.553 11 C 0.068 3.932 12 C -0.113 4.113 13 C -0.104 4.104 14 C 0.051 3.949 15 H -0.006 1.006 16 C -0.535 4.535 17 H 0.052 0.948 18 C 0.012 3.988 19 N -0.916 5.916 20 Si 0.955 3.045 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.280 1.280 24 C 0.082 3.918 25 H 0.083 0.917 26 H 0.112 0.888 27 H 0.093 0.907 28 H 0.236 0.764 29 H 0.167 0.833 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.027 0.973 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.023 0.977 42 H 0.260 0.740 43 H 0.057 0.943 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 16.954 -14.134 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.142 5.142 3 C -0.109 4.109 4 N -0.258 5.258 5 C -0.205 4.205 6 C -0.134 4.134 7 C -0.072 4.072 8 C -0.133 4.133 9 C -0.070 4.070 10 N -0.277 5.277 11 C -0.060 4.060 12 C -0.150 4.150 13 C -0.142 4.142 14 C 0.032 3.968 15 H 0.012 0.988 16 C -0.573 4.573 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.781 3.219 21 H -0.190 1.190 22 H -0.207 1.207 23 H -0.206 1.206 24 C -0.045 4.045 25 H 0.102 0.898 26 H 0.131 0.869 27 H 0.112 0.888 28 H 0.252 0.748 29 H 0.185 0.815 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.042 0.958 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -4.288 17.548 -13.751 22.702 hybrid contribution -1.277 -1.843 0.222 2.253 sum -5.564 15.705 -13.529 21.462 Atomic orbital electron populations 1.22347 0.74375 1.06330 1.04730 1.45550 1.08973 1.06063 1.53652 1.25553 0.85146 0.94870 1.05292 1.70204 1.21542 1.12738 1.21274 1.22287 0.96927 0.91222 1.10015 1.21427 0.91068 0.90755 1.10126 1.19975 1.02981 0.87139 0.97067 1.21427 1.01813 0.94056 0.96002 1.22129 1.00063 0.96149 0.88673 1.61894 1.48441 1.04707 1.12695 1.22026 0.92103 0.98538 0.93290 1.21601 1.00742 0.96471 0.96233 1.21455 0.97276 0.93468 1.01991 1.18596 0.93988 0.93252 0.90926 0.98775 1.21565 1.48512 0.93926 0.93343 0.92961 1.25742 0.94932 1.02568 0.95402 1.70051 1.50116 1.36821 0.98601 0.85557 0.77631 0.80512 0.78248 1.19041 1.20719 1.20627 1.21955 0.97709 0.86442 0.98405 0.89809 0.86901 0.88786 0.74783 0.81538 0.88700 0.89623 0.92309 0.92296 0.90680 0.94396 0.95481 0.89567 0.93476 0.91353 0.92547 0.95820 0.93115 0.92469 0.96561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 11.00 127.77 1.41 1.88 16 2 N -0.46 -7.48 3.15 -537.90 -1.70 -9.17 16 3 C 0.17 3.18 12.56 180.26 2.26 5.44 16 4 N -0.54 -14.00 11.25 -200.31 -2.25 -16.25 16 5 C -0.06 -1.41 11.79 83.52 0.98 -0.43 16 6 C -0.02 -0.36 6.21 40.95 0.25 -0.11 16 7 C -0.03 -0.55 5.55 29.85 0.17 -0.38 16 8 C -0.09 -2.04 5.13 30.59 0.16 -1.89 16 9 C 0.06 1.48 4.96 86.30 0.43 1.91 16 10 N -0.55 -19.36 4.65 -896.40 -4.17 -23.53 16 11 C 0.07 2.22 5.29 86.33 0.46 2.68 16 12 C -0.11 -4.35 6.09 30.65 0.19 -4.17 16 13 C -0.10 -5.01 5.02 30.68 0.15 -4.86 16 14 C 0.05 2.63 2.26 -11.49 -0.03 2.61 16 15 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 16 C -0.53 -29.89 8.57 25.60 0.22 -29.67 16 17 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 18 C 0.01 0.68 5.30 84.65 0.45 1.13 16 19 N -0.92 -53.82 11.35 21.45 0.24 -53.58 16 20 Si 0.95 43.94 29.54 68.60 2.03 45.96 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 C 0.08 3.47 4.68 86.33 0.40 3.87 16 25 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 27 H 0.09 0.57 7.12 -2.39 -0.02 0.55 16 28 H 0.24 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.12 7.09 -2.39 -0.02 1.11 16 32 H 0.06 1.27 6.44 -2.39 -0.02 1.26 16 33 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.07 1.90 7.98 -2.39 -0.02 1.88 16 35 H 0.04 0.90 8.12 -2.39 -0.02 0.88 16 36 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 2.36 6.22 -2.39 -0.01 2.35 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.06 3.10 6.15 -2.39 -0.01 3.09 16 41 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 43 H 0.06 2.38 8.01 -2.39 -0.02 2.36 16 44 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -70.06 346.42 2.60 -67.46 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.95 Total: 11.11 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 7.50 Total: -21.99 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -7.88 Total: -102.54 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -70.06 2.60 -67.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397794641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.019 kcal (2) G-P(sol) polarization free energy of solvation -70.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds